Publications by authors named "Shu Tadaka"

16Publications

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference.

Nucleic Acids Res 2019 01;47(D1):D55-D62

Graduate School of Information Sciences, Tohoku University, 6-3-09, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8679, Japan.

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http://dx.doi.org/10.1093/nar/gky1155DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324053PMC
January 2019

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index.

Plant Cell Physiol 2018 Jan;59(1):e3

Graduate School of Information Sciences, Tohoku University, 6-3-09, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8679 Japan.

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http://dx.doi.org/10.1093/pcp/pcx191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914358PMC
January 2018

jMorp: Japanese Multi Omics Reference Panel.

Nucleic Acids Res 2018 01;46(D1):D551-D557

Tohoku Medical Megabank Organization, Tohoku University, 2-1 Seiryo-machi, Aoba-ku, Miyagi 980-8575, Japan.

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http://dx.doi.org/10.1093/nar/gkx978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753289PMC
January 2018

NCMine: Core-peripheral based functional module detection using near-clique mining.

Bioinformatics 2016 11 27;32(22):3454-3460. Epub 2016 Jul 27.

Graduate School of Information Sciences, Tohoku University, Sendai, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btw488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181566PMC
November 2016

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression.

Plant Cell Physiol 2016 Jan 6;57(1):e5. Epub 2015 Nov 6.

Graduate School of Information Sciences, Tohoku University, 6-3-09, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8679 Japan Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency, Kawaguchi, Saitama, Japan

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http://dx.doi.org/10.1093/pcp/pcv165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722172PMC
January 2016

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.

Nucleic Acids Res 2015 Jan 11;43(Database issue):D82-6. Epub 2014 Nov 11.

Graduate School of Information Sciences, Tohoku University, 6-3-09, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8679, Japan Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573, Japan

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http://dx.doi.org/10.1093/nar/gku1163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383961PMC
January 2015

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.

Plant Cell Physiol 2014 Jan 10;55(1):e6. Epub 2013 Dec 10.

Graduate School of Information Sciences, Tohoku University, 6-3-09, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8679 Japan.

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http://dx.doi.org/10.1093/pcp/pct178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894708PMC
January 2014

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D1014-20. Epub 2012 Nov 29.

Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, Japan.

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http://dx.doi.org/10.1093/nar/gks1014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531062PMC
January 2013