Shozo Honda

Shozo Honda

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Shozo Honda

Shozo Honda

Publications by authors named "Shozo Honda"

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Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme.

RNA Biol 2019 Sep 12:1-9. Epub 2019 Sep 12.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University , Philadelphia , PA , USA.

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http://dx.doi.org/10.1080/15476286.2019.1664885DOI Listing
September 2019

Dumbbell-PCR for Discriminative Quantification of a Small RNA Variant.

Methods Mol Biol 2018 ;1680:65-73

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, 1020 Locust Street, JAH Suite #M77, Philadelphia, PA, 19107, USA.

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http://dx.doi.org/10.1007/978-1-4939-7339-2_4DOI Listing
May 2018

The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells.

Nucleic Acids Res 2017 Sep;45(15):9108-9120

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.1093/nar/gkx537DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5587776PMC
September 2017

Increasing cell density globally enhances the biogenesis of Piwi-interacting RNAs in Bombyx mori germ cells.

Sci Rep 2017 06 23;7(1):4110. Epub 2017 Jun 23.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1038/s41598-017-04429-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5482885PMC
June 2017

YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs.

Nucleic Acids Res 2017 May;45(9):e70

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.1093/nar/gkx005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605243PMC
May 2017

Selective amplification and sequencing of cyclic phosphate-containing RNAs by the cP-RNA-seq method.

Nat Protoc 2016 Mar 11;11(3):476-89. Epub 2016 Feb 11.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1038/nprot.2016.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4852555PMC
March 2016

SHOT-RNAs: A novel class of tRNA-derived functional RNAs expressed in hormone-dependent cancers.

Mol Cell Oncol 2016 Mar 23;3(2):e1079672. Epub 2015 Nov 23.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University , Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1080/23723556.2015.1079672DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905382PMC
March 2016

Four-leaf clover qRT-PCR: A convenient method for selective quantification of mature tRNA.

RNA Biol 2015 ;12(5):501-8

a Computational Medicine Center ; Sidney Kimmel Medical College ; Thomas Jefferson University ; Philadelphia , PA USA.

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http://dx.doi.org/10.1080/15476286.2015.1031951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615770PMC
February 2016

Identification and Functional Analysis of the Pre-piRNA 3' Trimmer in Silkworms.

Cell 2016 Feb;164(5):962-73

Institute of Molecular and Cellular Biosciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4856147PMC
February 2016

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies.

Oncotarget 2015 Sep;6(28):24797-822

Computational Medicine Center, Sidney Kimmel Medical College at Thomas Jefferson University, Philadelphia, PA, USA.

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http://dx.doi.org/10.18632/oncotarget.4695DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4694795PMC
September 2015

Dumbbell-PCR: a method to quantify specific small RNA variants with a single nucleotide resolution at terminal sequences.

Nucleic Acids Res 2015 Jul 16;43(12):e77. Epub 2015 Mar 16.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA

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http://dx.doi.org/10.1093/nar/gkv218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499115PMC
July 2015

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers.

Proc Natl Acad Sci U S A 2015 Jul 29;112(29):E3816-25. Epub 2015 Jun 29.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA 19107;

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http://dx.doi.org/10.1073/pnas.1510077112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4517238PMC
July 2015

Analysis of sDMA modifications of PIWI proteins.

Methods Mol Biol 2014 ;1093:137-48

Department of Biomedical Sciences, Cedars-Sinai Medical Center, Samuel Oschin Comprehensive Cancer Institute, Los Angeles, CA, USA.

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http://dx.doi.org/10.1007/978-1-62703-694-8_11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4376280PMC
June 2014

PIWI Expression and Function in Cancer.

Front Genet 2012 16;3:204. Epub 2012 Oct 16.

Department of Biomedical Sciences, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center Los Angeles, CA, USA.

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http://journal.frontiersin.org/article/10.3389/fgene.2012.00
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http://dx.doi.org/10.3389/fgene.2012.00204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472457PMC
October 2012

The incidence of hypoplasia of the corpus callosum in patients with dup (X)(q28) involving MECP2 is associated with the location of distal breakpoints.

Am J Med Genet A 2012 Jun 23;158A(6):1292-303. Epub 2012 Apr 23.

Department of Molecular Cytogenetics, Medical Research Institute and School of Biomedical Science, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1002/ajmg.a.35321DOI Listing
June 2012

Concomitant microduplications of MECP2 and ATRX in male patients with severe mental retardation.

J Hum Genet 2012 Jan 1;57(1):73-7. Epub 2011 Dec 1.

Department of Molecular Cytogenetics, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1038/jhg.2011.131DOI Listing
January 2012

Copy-number variations on the X chromosome in Japanese patients with mental retardation detected by array-based comparative genomic hybridization analysis.

J Hum Genet 2010 Sep 8;55(9):590-9. Epub 2010 Jul 8.

Department of Molecular Cytogenetics, Medical Research Institute and School of Biomedical Science, Tokyo Medical and Dental University, Tokyo, Japan.

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http://dx.doi.org/10.1038/jhg.2010.74DOI Listing
September 2010

Novel deletion at Xq24 including the UBE2A gene in a patient with X-linked mental retardation.

J Hum Genet 2010 Apr 26;55(4):244-7. Epub 2010 Mar 26.

Department of Molecular Cytogenetics, Medical Research Institute and School of Biomedical Science, Tokyo Medical and Dental University, Tokyo, Japan.

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http://dx.doi.org/10.1038/jhg.2010.14DOI Listing
April 2010

Construction of a high-density and high-resolution human chromosome X array for comparative genomic hybridization analysis.

J Hum Genet 2007 4;52(5):397-405. Epub 2007 Apr 4.

Department of Molecular Cytogenetics, Medical Research Institute and School of Biomedical Science, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo, 113-8510, Japan.

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http://dx.doi.org/10.1007/s10038-007-0127-4DOI Listing
August 2007

Clinical and molecular cytogenetic characterization of two patients with non-mutational aberrations of the FMR2 gene.

Am J Med Genet A 2007 Apr;143A(7):687-93

Department of Molecular Cytogenetics, Medical Research Institute and Graduate School of Biomedical Science, Tokyo Medical and Dental University, Tokyo, Japan.

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http://dx.doi.org/10.1002/ajmg.a.31638DOI Listing
April 2007