Shinsuke Ohnuki

Shinsuke Ohnuki

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Shinsuke Ohnuki

Shinsuke Ohnuki

Publications by authors named "Shinsuke Ohnuki"

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30Publications

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Genome editing to generate nonfoam-forming sake yeast strains.

Biosci Biotechnol Biochem 2019 Aug 12;83(8):1583-1593. Epub 2019 Jun 12.

a Department of Integrated Biosciences, Graduate School of Frontier Sciences , The University of Tokyo , Kashiwa, Chiba , Japan.

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http://dx.doi.org/10.1080/09168451.2019.1631146DOI Listing
August 2019

Morphometric analysis of autophagy-related structures in Saccharomyces cerevisiae.

Autophagy 2017 17;13(12):2104-2110. Epub 2017 Dec 17.

a Department of Integrated Biosciences , Graduate School of Frontier Sciences , University of Tokyo , Kashiwa , Chiba , Japan.

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https://www.tandfonline.com/doi/full/10.1080/15548627.2017.1
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http://dx.doi.org/10.1080/15548627.2017.1384888DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5788549PMC
July 2019

Implications of maintenance of mother-bud neck size in diverse vital processes of Saccharomyces cerevisiae.

Curr Genet 2019 Feb 31;65(1):253-267. Epub 2018 Jul 31.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, 277-8562, Japan.

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http://dx.doi.org/10.1007/s00294-018-0872-2DOI Listing
February 2019

Simulated microgravity triggers characteristic morphology and stress response in Saccharomyces cerevisiae.

Yeast 2019 02 7;36(2):85-97. Epub 2018 Nov 7.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.

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http://doi.wiley.com/10.1002/yea.3361
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http://dx.doi.org/10.1002/yea.3361DOI Listing
February 2019

High-dimensional single-cell phenotyping reveals extensive haploinsufficiency.

PLoS Biol 2018 05 16;16(5):e2005130. Epub 2018 May 16.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1371/journal.pbio.2005130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5955526PMC
May 2018

Carotenoid dynamics and lipid droplet containing astaxanthin in response to light in the green alga Haematococcus pluvialis.

Sci Rep 2018 04 4;8(1):5617. Epub 2018 Apr 4.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan.

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http://dx.doi.org/10.1038/s41598-018-23854-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5884812PMC
April 2018

Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae.

BMC Genomics 2018 02 20;19(1):149. Epub 2018 Feb 20.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba Prefecture, 277-8562, Japan.

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http://dx.doi.org/10.1186/s12864-018-4526-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819264PMC
February 2018

Promoter engineering of the Saccharomyces cerevisiae RIM15 gene for improvement of alcoholic fermentation rates under stress conditions.

J Biosci Bioeng 2017 Feb 12;123(2):183-189. Epub 2016 Sep 12.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jbiosc.2016.08.004DOI Listing
February 2017

Large-Scale Survey of Intraspecific Fitness and Cell Morphology Variation in a Protoploid Yeast Species.

G3 (Bethesda) 2016 04 7;6(4):1063-71. Epub 2016 Apr 7.

Department of Genetics, Genomics and Microbiology, University of Strasbourg - Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7156, 67083 Strasbourg, France

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http://dx.doi.org/10.1534/g3.115.026682DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4825641PMC
April 2016

Single-cell phenomics in budding yeast.

Mol Biol Cell 2015 Nov;26(22):3920-5

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa 277-8562, Japan.

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https://www.molbiolcell.org/doi/10.1091/mbc.E15-07-0466
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http://dx.doi.org/10.1091/mbc.E15-07-0466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710224PMC
November 2015

Image-based prediction of drug target in yeast.

Methods Mol Biol 2015 ;1263:319-27

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba Prefecture, 277-8562, Japan.

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http://dx.doi.org/10.1007/978-1-4939-2269-7_24DOI Listing
September 2015

Profiling of the effects of antifungal agents on yeast cells based on morphometric analysis.

FEMS Yeast Res 2015 Aug 10;15(5):fov040. Epub 2015 Jun 10.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, 277-8561, Japan

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https://femsyr.oxfordjournals.org/content/femsyr/15/5/fov040
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http://femsyr.oxfordjournals.org/lookup/doi/10.1093/femsyr/f
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http://dx.doi.org/10.1093/femsyr/fov040DOI Listing
August 2015

Quantification of cell, actin, and nuclear DNA morphology with high-throughput microscopy and CalMorph.

Cold Spring Harb Protoc 2015 Apr 1;2015(4):408-12. Epub 2015 Apr 1.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba Prefecture 277-8562, Japan.

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http://dx.doi.org/10.1101/pdb.prot078667DOI Listing
April 2015

Hyperspectral imaging techniques for the characterization of Haematococcus pluvialis (Chlorophyceae).

J Phycol 2014 Oct 17;50(5):939-47. Epub 2014 Sep 17.

Laboratory of Signal Transduction, Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, FSB101, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan.

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http://dx.doi.org/10.1111/jpy.12226DOI Listing
October 2014

Unveiling nonessential gene deletions that confer significant morphological phenotypes beyond natural yeast strains.

BMC Genomics 2014 Oct 25;15:932. Epub 2014 Oct 25.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Bldg, FSB-101, 5-1-5 Kashiwanoha, Kashiwa 277-8562, Chiba Prefecture, Japan.

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http://dx.doi.org/10.1186/1471-2164-15-932DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4221665PMC
October 2014

Dynamic changes in brewing yeast cells in culture revealed by statistical analyses of yeast morphological data.

J Biosci Bioeng 2014 Mar 6;117(3):278-84. Epub 2013 Sep 6.

Department of Integrated Bioscience, Graduate School of Frontier Sciences, University of Tokyo, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jbiosc.2013.08.005DOI Listing
March 2014

Distinct roles of cell wall biogenesis in yeast morphogenesis as revealed by multivariate analysis of high-dimensional morphometric data.

Mol Biol Cell 2014 Jan 20;25(2):222-33. Epub 2013 Nov 20.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba 277-8561, Japan Instituto de Biología Funcional y Genómica and Departamento de Microbiología y Genética, CSIC/Universidad de Salamanca, 37007 Salamanca, Spain Department of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11794.

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http://dx.doi.org/10.1091/mbc.E13-07-0396DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890343PMC
January 2014

Image-based monitoring system for green algal Haematococcus pluvialis (Chlorophyceae) cells during culture.

Plant Cell Physiol 2013 Nov 20;54(11):1917-29. Epub 2013 Sep 20.

Laboratory of Signal Transduction, Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, 277-8562 Japan.

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http://dx.doi.org/10.1093/pcp/pct126DOI Listing
November 2013

Profilin is required for Ca2+ homeostasis and Ca2+-modulated bud formation in yeast.

Mol Genet Genomics 2013 Aug 26;288(7-8):317-28. Epub 2013 May 26.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Building FBS-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.

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http://dx.doi.org/10.1007/s00438-013-0752-xDOI Listing
August 2013

Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast.

BMC Syst Biol 2013 Jul 3;7:54. Epub 2013 Jul 3.

Laboratoire de Biologie Moléculaire de la Cellule, Ecole Normale Supérieure de Lyon; CNRS, Université Lyon 1, 46 Allée d'Italie, Lyon F-69007, France.

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http://dx.doi.org/10.1186/1752-0509-7-54DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711934PMC
July 2013

Role of bottom-fermenting brewer's yeast KEX2 in high temperature resistance and poor proliferation at low temperatures.

J Gen Appl Microbiol 2010 Aug;56(4):297-312

Research Laboratories of Brewing Technology, Asahi Breweries, LTD., Moriya, Ibaraki, Japan.

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August 2010

High-content, image-based screening for drug targets in yeast.

PLoS One 2010 Apr 14;5(4):e10177. Epub 2010 Apr 14.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0010177PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2854693PMC
April 2010

A microfluidic device to acquire high-magnification microphotographs of yeast cells.

Cell Div 2009 Mar 24;4. Epub 2009 Mar 24.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Bldg, FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan.

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http://dx.doi.org/10.1186/1747-1028-4-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2669073PMC
March 2009

Diversity of Ca2+-induced morphology revealed by morphological phenotyping of Ca2+-sensitive mutants of Saccharomyces cerevisiae.

Eukaryot Cell 2007 May 9;6(5):817-30. Epub 2007 Mar 9.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Bldg. FSB-101, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan.

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http://dx.doi.org/10.1128/EC.00012-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899241PMC
May 2007