Shinobu Okamoto

Shinobu Okamoto

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Shinobu Okamoto

Shinobu Okamoto

Publications by authors named "Shinobu Okamoto"

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23Publications

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Implementation of linked data in the life sciences at BioHackathon 2011.

J Biomed Semantics 2015 7;6. Epub 2015 Jan 7.

Department of Bioclinical informatics, Tohoku Medical Megabank Organization, Tohoku University, Seiryo-cho 4-1, Aoba-ku, Sendai-shi Miyagi, 980-8575 Japan.

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http://dx.doi.org/10.1186/2041-1480-6-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4429360PMC
May 2015

Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark.

Plant Cell Physiol 2015 Feb 20;56(2):334-45. Epub 2014 Nov 20.

Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601 Japan

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http://dx.doi.org/10.1093/pcp/pcu165DOI Listing
February 2015

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.

Nucleic Acids Res 2014 Jan 25;42(Database issue):D666-70. Epub 2013 Nov 25.

Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan, Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan, Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto 603-8555, Japan and Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu 292-0818, Japan.

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http://dx.doi.org/10.1093/nar/gkt1145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965071PMC
January 2014

CyanoBase: the cyanobacteria genome database update 2010.

Nucleic Acids Res 2010 Jan 30;38(Database issue):D379-81. Epub 2009 Oct 30.

Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0812, Japan.

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http://dx.doi.org/10.1093/nar/gkp915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808859PMC
January 2010

Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis.

Environ Sci Technol 2007 Dec;41(23):7997-8003

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1021/es062751sDOI Listing
December 2007

Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis.

Proteomics 2007 Mar;7(6):900-9

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan.

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http://dx.doi.org/10.1002/pmic.200600862DOI Listing
March 2007

Group 3 sigma factor gene, sigJ, a key regulator of desiccation tolerance, regulates the synthesis of extracellular polysaccharide in cyanobacterium Anabaena sp. strain PCC 7120.

DNA Res 2007 Feb 21;14(1):13-24. Epub 2007 Mar 21.

Center of Systems Biology and Ecology, Faculty of Science, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan.

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http://dx.doi.org/10.1093/dnares/dsm003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779892PMC
February 2007

A phytochrome-like protein AphC triggers the cAMP signaling induced by far-red light in the cyanobacterium Anabaena sp. strain PCC7120.

Photochem Photobiol 2004 Nov-Dec;80(3):429-33

Department of Biology, Graduate School of Arts and Sciences, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1562/0031-8655(2004)080<0429:APPATT>2.0.CO;2DOI Listing
November 2006

Photoresponsive cAMP signal transduction in cyanobacteria.

Photochem Photobiol Sci 2004 Jun 10;3(6):503-11. Epub 2004 May 10.

Department of Life Sciences (Biology), Graduate School of Arts and Sciences, The University of Tokyo, Meguro, Tokyo 153-8902, Japan.

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http://dx.doi.org/10.1039/b401623hDOI Listing
June 2004

Molecular evolution of PAS domain-containing proteins of filamentous cyanobacteria through domain shuffling and domain duplication.

DNA Res 2004 Apr;11(2):69-81

Department of Life Sciences (Biology), Graduate School of Arts and Sciences, University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan.

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http://dx.doi.org/10.1093/dnares/11.2.69DOI Listing
April 2004

The cyanobacterial PilT protein responsible for cell motility and transformation hydrolyzes ATP.

Plant Cell Physiol 2002 Oct;43(10):1127-36

Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Komaba, Meguro, Tokyo, 153-8902 Japan.

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http://dx.doi.org/10.1093/pcp/pcf128DOI Listing
October 2002

Regulation of cAMP-mediated photosignaling by a phytochrome in the cyanobacterium Anabaena cylindrica.

Photochem Photobiol 2002 Jun;75(6):675-9

Department of Biology, Graduate School of Arts and Sciences, University of Tokyo, Komaba, Japan.

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http://dx.doi.org/10.1562/0031-8655(2002)075<0675:rocmpb>2.0.co;2DOI Listing
June 2002

A cAMP receptor protein, SYCRP1, is responsible for the cell motility of Synechocystis sp. PCC 6803.

Plant Cell Physiol 2002 Apr;43(4):460-3

Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro 153-8902 Japan.

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http://dx.doi.org/10.1093/pcp/pcf050DOI Listing
April 2002