Shinichi Nakagawa

Shinichi Nakagawa

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Shinichi Nakagawa

Publications by authors named "Shinichi Nakagawa"

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Making conservation science more reliable with preregistration and registered reports.

Conserv Biol 2019 Aug 22;33(4):747-750. Epub 2019 May 22.

Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Randwick, New South Wales, 2052, Australia.

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http://dx.doi.org/10.1111/cobi.13342DOI Listing
August 2019

A General Method for Simultaneously Accounting for Phylogenetic and Species Sampling Uncertainty via Rubin's Rules in Comparative Analysis.

Syst Biol 2019 Jul;68(4):632-641

CEFE, CNRS, Université de Montpellier, Université Paul Valéry Montpellier 3, EPHE, IRD, Montpellier, France Shinichi Nakagawa and Pierre de Villemereuil contributed equally to this article.

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http://dx.doi.org/10.1093/sysbio/syy089DOI Listing
July 2019

Mammalian NSUN2 introduces 5-methylcytidines into mitochondrial tRNAs.

Nucleic Acids Res 2019 Jul 9. Epub 2019 Jul 9.

Department of Chemistry and Biotechnology, Graduate School of Engineering, the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.

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http://dx.doi.org/10.1093/nar/gkz575DOI Listing
July 2019

The covariance between metabolic rate and behaviour varies across behaviours and thermal types: meta-analytic insights.

Biol Rev Camb Philos Soc 2019 Jun 26;94(3):1056-1074. Epub 2018 Dec 26.

Evolution and Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia.

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http://dx.doi.org/10.1111/brv.12491DOI Listing
June 2019

Effects of nutrient limitation on sperm and seminal fluid: a systematic review and meta-analysis.

Biol Rev Camb Philos Soc 2019 Jun 19. Epub 2019 Jun 19.

Evolution and Ecology Research Centre and School of Biological, Earth and Environmental Sciences, UNSW Australia, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1111/brv.12524DOI Listing
June 2019

Dietary macronutrient content, age-specific mortality and lifespan.

Proc Biol Sci 2019 May;286(1902):20190393

1 Charles Perkins Centre, The University of Sydney , Camperdown, New South Wales 2006 , Australia.

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http://dx.doi.org/10.1098/rspb.2019.0393DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6532506PMC
May 2019

Molecular anatomy of the architectural NEAT1 noncoding RNA: The domains, interactors, and biogenesis pathway required to build phase-separated nuclear paraspeckles.

Wiley Interdiscip Rev RNA 2019 May 1:e1545. Epub 2019 May 1.

RNA Biology Laboratory, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo, Japan.

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http://dx.doi.org/10.1002/wrna.1545DOI Listing
May 2019

Targeting epigenetics and non-coding RNAs in atherosclerosis: from mechanisms to therapeutics.

Pharmacol Ther 2019 Apr 13;196:15-43. Epub 2018 Nov 13.

Aab Cardiovascular Research Institute, Department of Medicine, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.pharmthera.2018.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6450782PMC
April 2019

Research Weaving: Visualizing the Future of Research Synthesis.

Trends Ecol Evol 2019 03 20;34(3):224-238. Epub 2018 Dec 20.

Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW 2052, Australia; These authors contributed equally.

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https://linkinghub.elsevier.com/retrieve/pii/S01695347183027
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http://dx.doi.org/10.1016/j.tree.2018.11.007DOI Listing
March 2019

Potential impact of the joint association of total bilirubin and gamma-glutamyltransferase with metabolic syndrome.

Diabetol Metab Syndr 2019 4;11:12. Epub 2019 Feb 4.

1Department of Endocrinology and Metabolism, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, 465 Kajii-cho, Kawaramachi-Hirokoji, Kamigyo-ku, Kyoto, 602-8566 Japan.

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http://dx.doi.org/10.1186/s13098-019-0408-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6360758PMC
February 2019

Questionable research practices in ecology and evolution.

PLoS One 2018 16;13(7):e0200303. Epub 2018 Jul 16.

School of BioSciences, University of Melbourne, Parkville, VIC, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0200303PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047784PMC
January 2019

TChIP-Seq: Cell-Type-Specific Epigenome Profiling.

J Vis Exp 2019 Jan 23(143). Epub 2019 Jan 23.

RNA Systems Biochemistry Laboratory, RIKEN Cluster for Pioneering Research; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, University of Tokyo;

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http://dx.doi.org/10.3791/58298DOI Listing
January 2019

UPA-seq: prediction of functional lncRNAs using differential sensitivity to UV crosslinking.

RNA 2018 12 19;24(12):1785-1802. Epub 2018 Sep 19.

RNA Biology Laboratory, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan.

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http://dx.doi.org/10.1261/rna.067611.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239193PMC
December 2018

Plan S will hit some academic societies hard.

Nature 2018 12;564(7734):39

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http://dx.doi.org/10.1038/d41586-018-07609-1DOI Listing
December 2018

Molecular dissection of nuclear paraspeckles: towards understanding the emerging world of the RNP milieu.

Open Biol 2018 10 24;8(10). Epub 2018 Oct 24.

Institute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan.

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http://dx.doi.org/10.1098/rsob.180150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6223218PMC
October 2018

Non-coding RNAs in cardiovascular diseases: diagnostic and therapeutic perspectives.

Eur Heart J 2018 Aug;39(29):2704-2716

Department of Cardiology, CBF, CC11, Charite Universitätsmedizin Berlin, Campus Benjamin Franklin, Charite Centrum 11 (Cardiovascular Medicine), Hindenburgdamm 20, Berlin, Germany.

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http://dx.doi.org/10.1093/eurheartj/ehx165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454570PMC
August 2018

Sex differences in life history, behavior, and physiology along a slow-fast continuum: a meta-analysis.

Behav Ecol Sociobiol 2018 17;72(8):132. Epub 2018 Jul 17.

6Ecology and Evolution Research Centre, School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052 Australia.

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http://dx.doi.org/10.1007/s00265-018-2534-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6060830PMC
July 2018

Empowering peer reviewers with a checklist to improve transparency.

Nat Ecol Evol 2018 06 22;2(6):929-935. Epub 2018 May 22.

Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Randwick, New South Wales, Australia.

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http://dx.doi.org/10.1038/s41559-018-0545-zDOI Listing
June 2018

Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation.

Mol Cell 2018 06;70(6):1038-1053.e7

Institute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2018.05.019DOI Listing
June 2018

CO-sensitive tRNA modification associated with human mitochondrial disease.

Nat Commun 2018 05 14;9(1):1875. Epub 2018 May 14.

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.

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http://dx.doi.org/10.1038/s41467-018-04250-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5951830PMC
May 2018

Computer Animation Technology in Behavioral Sciences: A Sequential, Automatic, and High-Throughput Approach to Quantifying Personality in Zebrafish (Danio rerio).

Zebrafish 2018 04 30;15(2):206-210. Epub 2018 Jan 30.

1 Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales , Sydney, Australia .

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http://dx.doi.org/10.1089/zeb.2017.1532DOI Listing
April 2018

Meta-analysis and the science of research synthesis.

Nature 2018 03;555(7695):175-182

School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.

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http://dx.doi.org/10.1038/nature25753DOI Listing
March 2018

Paraspeckles: Where Long Noncoding RNA Meets Phase Separation.

Trends Biochem Sci 2018 02 27;43(2):124-135. Epub 2017 Dec 27.

School of Molecular Sciences, University of Western Australia, Crawley, Western Australia, 6009, Australia.

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http://dx.doi.org/10.1016/j.tibs.2017.12.001DOI Listing
February 2018

The French press: a repeatable and high-throughput approach to exercising zebrafish ().

PeerJ 2018 17;6:e4292. Epub 2018 Jan 17.

Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia.

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http://dx.doi.org/10.7717/peerj.4292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5775754PMC
January 2018

Zebrafish Regulatory T Cells Mediate Organ-Specific Regenerative Programs.

Dev Cell 2017 12;43(6):659-672.e5

Developmental and Stem Cell Biology Division, Victor Chang Cardiac Research Institute, Darlinghurst, NSW 2010, Australia; St. Vincent's Clinical School, University of New South Wales, Kensington, NSW 2052, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2017.11.010DOI Listing
December 2017

Life-span Extension With Reduced Somatotrophic Signaling: Moderation of Aging Effect by Signal Type, Sex, and Experimental Cohort.

J Gerontol A Biol Sci Med Sci 2017 Nov;72(12):1620-1626

Department of Animal and Plant Sciences, University of Sheffield, UK.

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http://dx.doi.org/10.1093/gerona/glx010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5861954PMC
November 2017

Divide and conquer? Size adjustment with allometry and intermediate outcomes.

BMC Biol 2017 11 9;15(1):107. Epub 2017 Nov 9.

Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW, 2052, Australia.

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http://dx.doi.org/10.1186/s12915-017-0448-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679152PMC
November 2017

Personality-matching habitat choice, rather than behavioural plasticity, is a likely driver of a phenotype-environment covariance.

Proc Biol Sci 2017 Oct;284(1864)

Department of Zoology, University of Otago, 340 Great King Street, Dunedin 9016, New Zealand.

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http://dx.doi.org/10.1098/rspb.2017.0943DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647288PMC
October 2017

The coefficient of determination and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded.

J R Soc Interface 2017 09 13;14(134). Epub 2017 Sep 13.

Population Ecology Group, Institute of Ecology, Friedrich Schiller University Jena, Dornburger Strasse 159, 07743 Jena, Germany

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http://dx.doi.org/10.1098/rsif.2017.0213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5636267PMC
September 2017

Task-oriented interventions for children with developmental co-ordination disorder.

Cochrane Database Syst Rev 2017 07 31;7:CD010914. Epub 2017 Jul 31.

School of Physical Education, Sport and Exercise Sciences, University of Otago, PO Box 56, Dunedin, New Zealand, 9054.

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http://dx.doi.org/10.1002/14651858.CD010914.pub2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6483344PMC
July 2017

Family living sets the stage for cooperative breeding and ecological resilience in birds.

PLoS Biol 2017 Jun 21;15(6):e2000483. Epub 2017 Jun 21.

Department of Biology, Washington University in St. Louis, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.2000483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5479502PMC
June 2017

Nonindependence and sensitivity analyses in ecological and evolutionary meta-analyses.

Mol Ecol 2017 May 9;26(9):2410-2425. Epub 2017 Mar 9.

Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, NSW, Australia.

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http://dx.doi.org/10.1111/mec.14031DOI Listing
May 2017

Phylogenetic comparative methods.

Curr Biol 2017 May;27(9):R333-R336

Evolution & Ecology Research Centre, University of New South Wales, Sydney, NSW 2052, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2017.03.049DOI Listing
May 2017

Meta-evaluation of meta-analysis: ten appraisal questions for biologists.

BMC Biol 2017 03 3;15(1):18. Epub 2017 Mar 3.

Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW, 2052, Australia.

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http://dx.doi.org/10.1186/s12915-017-0357-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5336618PMC
March 2017

Facultative adjustment of the offspring sex ratio and male attractiveness: a systematic review and meta-analysis.

Biol Rev Camb Philos Soc 2017 Feb 25;92(1):108-134. Epub 2015 Sep 25.

Division of Evolution, Ecology & Genetics, Research School of Biology, The Australian National University, Daley road, Canberra, Australian Capital Territory, 2601, Australia.

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http://thejennionslab.weebly.com/uploads/2/6/5/0/26509069/pa
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http://dx.doi.org/10.1111/brv.12220DOI Listing
February 2017

The effects of sex hormones on immune function: a meta-analysis.

Biol Rev Camb Philos Soc 2017 Feb 22;92(1):551-571. Epub 2016 Jan 22.

ARC Centre of Excellence in Cognition and its Disorders, School of Psychology, University of Western Australia, 35 Stirling Hwy, Crawley, Western Australia, 6009, Australia.

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http://dx.doi.org/10.1111/brv.12243DOI Listing
February 2017

Conspicuous plumage colours are highly variable.

Proc Biol Sci 2017 01;284(1847)

School of Biological Sciences, Monash University, 3800, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1098/rspb.2016.2593DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5310046PMC
January 2017

Fraud Not a Primary Cause of Irreproducible Results: A Reply to Clark et al.

Trends Ecol Evol 2016 12 29;31(12):900. Epub 2016 Sep 29.

University of New South Wales, Sydney, Australia.

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http://dx.doi.org/10.1016/j.tree.2016.09.004DOI Listing
December 2016

Heterogeneity in ecological and evolutionary meta-analyses: its magnitude and implications.

Ecology 2016 Dec;97(12):3293-3299

Evolution and Ecology Research Centre, and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1002/ecy.1591DOI Listing
December 2016

Misregulation of an Activity-Dependent Splicing Network as a Common Mechanism Underlying Autism Spectrum Disorders.

Mol Cell 2016 12;64(6):1023-1034

Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada; Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, 600 University Avenue, Toronto, ON M5G 1X5, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2016.11.033DOI Listing
December 2016

Effect of maternal diet on offspring coping styles in rodents: a systematic review and meta-analysis.

Biol Rev Camb Philos Soc 2016 Nov 15;91(4):1065-1080. Epub 2015 Jul 15.

Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.

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http://dx.doi.org/10.1111/brv.12210DOI Listing
November 2016

General Methods for Evolutionary Quantitative Genetic Inference from Generalized Mixed Models.

Genetics 2016 11 2;204(3):1281-1294. Epub 2016 Sep 2.

School of Evolutionary Biology, University of St. Andrews, St. Andrews KY16 9TH, United Kingdom

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http://dx.doi.org/10.1534/genetics.115.186536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5105857PMC
November 2016

House sparrows.

Curr Biol 2016 11;26(22):R1171-R1173

Evolution & Ecology Research Centre, School of Biological, Earth & Environmental Sciences, University of New South Wales, Sydney, NSW 2052, Australia.

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http://dx.doi.org/10.1016/j.cub.2016.07.047DOI Listing
November 2016

The effect of dietary restriction on reproduction: a meta-analytic perspective.

BMC Evol Biol 2016 Oct 7;16(1):199. Epub 2016 Oct 7.

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Ashworth Labs, Kings Buildings, Edinburgh, EH9 3JT, UK.

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http://dx.doi.org/10.1186/s12862-016-0768-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054627PMC
October 2016

Control of Chromosomal Localization of Xist by hnRNP U Family Molecules.

Dev Cell 2016 10;39(1):11-12

RNA Biology Laboratory, RIKEN, Hirosawa 2-1, Wako, Saitama 351-0198, Japan; RNA Biology Laboratory, Faculty of Pharmaceutical Sciences, Hokkaido University, Kita 12-jo Nishi 6-chome, Kita-ku, Sapporo 060-0812, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2016.09.022DOI Listing
October 2016

Open data: towards full transparency.

Nature 2016 10;538(7626):459

Stony Brook University, New York, USA.

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http://dx.doi.org/10.1038/538459dDOI Listing
October 2016

Sex differences in DNA methylation and expression in zebrafish brain: a test of an extended 'male sex drive' hypothesis.

Gene 2016 Sep 31;590(2):307-16. Epub 2016 May 31.

Department of Zoology, University of Otago, 340 Great King Street, Dunedin 9054, New Zealand; Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, 2052 Sydney, NSW, Australia; Diabetes and Metabolism Division, Garvan Institute of Medical Research, Darlinghurst, NSW 2010, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2016.05.042DOI Listing
September 2016

Transparency in Ecology and Evolution: Real Problems, Real Solutions.

Trends Ecol Evol 2016 09 25;31(9):711-719. Epub 2016 Jul 25.

University of New South Wales, Sydney, Australia.

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http://dx.doi.org/10.1016/j.tree.2016.07.002DOI Listing
September 2016

Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization.

J Cell Biol 2016 09 19;214(7):817-30. Epub 2016 Sep 19.

RNA Biology Laboratory, RIKEN, Wako 351-0198, Japan RNA Biology Laboratory, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan

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http://dx.doi.org/10.1083/jcb.201601071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037409PMC
September 2016

Paraspeckles modulate the intranuclear distribution of paraspeckle-associated Ctn RNA.

Sci Rep 2016 Sep 26;6:34043. Epub 2016 Sep 26.

Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5036046PMC
http://dx.doi.org/10.1038/srep34043DOI Listing
September 2016

Comparative idiosyncrasies in life extension by reduced mTOR signalling and its distinctiveness from dietary restriction.

Aging Cell 2016 Aug 3;15(4):737-43. Epub 2016 May 3.

Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK.

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http://dx.doi.org/10.1111/acel.12489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933670PMC
August 2016

Simultaneous multicolor detection of RNA and proteins using super-resolution microscopy.

Methods 2016 Apr 10;98:158-165. Epub 2015 Nov 10.

RNA Biology Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2015.11.007DOI Listing
April 2016

Long noncoding RNA MALAT1-derived mascRNA is involved in cardiovascular innate immunity.

J Mol Cell Biol 2016 04 27;8(2):178-81. Epub 2016 Jan 27.

Department of Cardiology and Pneumology, Campus Benjamin Franklin, Charité - Universitätsmedizin Berlin, Berlin, Germany Berlin Center for Regenerative Therapies (BCRT), Charité - Universitätsmedizin Berlin, Berlin, Germany German Center for Cardiovascular Research (DZHK), Site Berlin, Germany

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http://dx.doi.org/10.1093/jmcb/mjw003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283121PMC
April 2016

Natural antisense RNA promotes 3' end processing and maturation of MALAT1 lncRNA.

Nucleic Acids Res 2016 Apr 29;44(6):2898-908. Epub 2016 Jan 29.

Department of Cell and Developmental Biology, University of Illinois Urbana, IL 61801, USA

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http://dx.doi.org/10.1093/nar/gkw047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824109PMC
April 2016

Association of Amine-Receptor DNA Sequence Variants with Associative Learning in the Honeybee.

Behav Genet 2016 Mar 26;46(2):242-51. Epub 2015 Sep 26.

Department of Zoology, University of Otago, Otago, Dunedin, New Zealand.

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http://dx.doi.org/10.1007/s10519-015-9749-zDOI Listing
March 2016

Lessons from reverse-genetic studies of lncRNAs.

Biochim Biophys Acta 2016 Jan 24;1859(1):177-83. Epub 2015 Jun 24.

RNA Biology Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbagrm.2015.06.011DOI Listing
January 2016

MALAT1 long non-coding RNA in cancer.

Biochim Biophys Acta 2016 Jan 3;1859(1):192-9. Epub 2015 Oct 3.

RNA Biology Laboratory, RIKEN, Hirosawa, Wako, Saitama 351-0198, Japan.

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http://dx.doi.org/10.1016/j.bbagrm.2015.09.012DOI Listing
January 2016

Clues to long noncoding RNA taxonomy.

Biochim Biophys Acta 2016 Jan 28;1859(1):1-2. Epub 2015 Nov 28.

Nakagawa RNA biology laboratory, RIKEN, 2-1 Hirosawa Wako, Saitama 351-0198, Japan.

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http://dx.doi.org/10.1016/j.bbagrm.2015.11.011DOI Listing
January 2016

The role of non-genetic inheritance in evolutionary rescue: epigenetic buffering, heritable bet hedging and epigenetic traps.

Environ Epigenet 2016 Jan 15;2(1):dvv014. Epub 2016 Feb 15.

Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW, Australia.

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http://dx.doi.org/10.1093/eep/dvv014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5804513PMC
January 2016

Proteomic analysis of early-stage embryos: implications for egg quality in hapuku (Polyprion oxygeneios).

Fish Physiol Biochem 2015 Dec 18;41(6):1403-17. Epub 2015 Jul 18.

Department of Zoology, University of Otago, PO Box 56, 340 Great King St., Dunedin, 9016, New Zealand.

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http://dx.doi.org/10.1007/s10695-015-0095-0DOI Listing
December 2015

Conflict and cooperation over sex: the consequences of social and genetic polyandry for reproductive success in dunnocks.

J Anim Ecol 2015 Nov 1;84(6):1509-19. Epub 2015 Oct 1.

Department of Zoology, University of Otago, 340 Great King Street, Dunedin 9016, New Zealand.

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http://dx.doi.org/10.1111/1365-2656.12432DOI Listing
November 2015

Regulation of gene expression via retrotransposon insertions and the noncoding RNA 4.5S RNAH.

Genes Cells 2015 Nov 3;20(11):887-901. Epub 2015 Sep 3.

RNA Biology Laboratory, RIKEN Advanced Research Institute, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.

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http://dx.doi.org/10.1111/gtc.12280DOI Listing
November 2015

Increased tolerance to humans among disturbed wildlife.

Nat Commun 2015 Nov 16;6:8877. Epub 2015 Nov 16.

Department of Ecology and Evolutionary Biology, University of California, 621 Young Drive South, Los Angeles, California 90095-1606, USA.

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http://dx.doi.org/10.1038/ncomms9877DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4660219PMC
November 2015

An Overlooked Consequence of Dietary Mixing: A Varied Diet Reduces Interindividual Variance in Fitness.

Am Nat 2015 Nov 28;186(5):649-59. Epub 2015 Sep 28.

Charles Perkins Centre and School of Biological Sciences, University of Sydney, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1086/683182DOI Listing
November 2015

Replicating research in ecology and evolution: feasibility, incentives, and the cost-benefit conundrum.

BMC Biol 2015 Oct 28;13:88. Epub 2015 Oct 28.

Biology Department, Whitman College, Walla Walla, WA, 99362, USA.

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http://dx.doi.org/10.1186/s12915-015-0196-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624660PMC
October 2015

Super-resolution imaging of nuclear bodies by STED microscopy.

Methods Mol Biol 2015 ;1262:21-35

Laboratory for Cell Polarity Regulation, RIKEN Quantitative Biology Center, 6-2-3 Furuedai, Suita, Osaka, 565-0824, Japan,

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http://dx.doi.org/10.1007/978-1-4939-2253-6_2DOI Listing
September 2015

SiRNA screening of nuclear proteins.

Methods Mol Biol 2015 ;1262:333-48

RNA Biology Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan,

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http://dx.doi.org/10.1007/978-1-4939-2253-6_21DOI Listing
September 2015

Are molecular markers useful predictors of adaptive potential?

Ecol Lett 2015 Aug 18;18(8):772-8. Epub 2015 May 18.

Institute of Evolutionary Biology, University of Edinburgh, The King's Buildings, Charlotte Auerbach Road, EH9 3FL, UK.

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http://dx.doi.org/10.1111/ele.12454DOI Listing
August 2015

Xist Exon 7 Contributes to the Stable Localization of Xist RNA on the Inactive X-Chromosome.

PLoS Genet 2015 Aug 5;11(8):e1005430. Epub 2015 Aug 5.

Division of Reproductive Sciences, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005430DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526699PMC
August 2015

Limited catching bias in a wild population of birds with near-complete census information.

Ecol Evol 2015 Aug 29;5(16):3500-6. Epub 2015 Jul 29.

Evolutionary Biology, Max Planck Institute for Ornithology Seewiesen, DE-82319, Germany.

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http://dx.doi.org/10.1002/ece3.1623DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4569043PMC
August 2015

Scale-dependent phenological synchrony between songbirds and their caterpillar food source.

Am Nat 2015 Jul 5;186(1):84-97. Epub 2015 May 5.

Edward Grey Institute, Department of Zoology, Tinbergen Building, University of Oxford, South Parks Road, Oxford, OX1 3PS, United Kingdom.

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http://dx.doi.org/10.1086/681572DOI Listing
July 2015

Are extra-pair males different from cuckolded males? A case study and a meta-analytic examination.

Mol Ecol 2015 Apr 20;24(7):1558-71. Epub 2015 Mar 20.

Department of Zoology, University of Otago, Dunedin, New Zealand.

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http://dx.doi.org/10.1111/mec.13124DOI Listing
April 2015

Reduced fitness in progeny from old parents in a natural population.

Proc Natl Acad Sci U S A 2015 Mar 9;112(13):4021-5. Epub 2015 Mar 9.

Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1422715112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4386340PMC
March 2015

Consistent age-dependent declines in human semen quality: a systematic review and meta-analysis.

Ageing Res Rev 2015 Jan 21;19:22-33. Epub 2014 Nov 21.

Department of Zoology, University of Otago, Dunedin 9054, New Zealand; Gravida: National Centre for Growth and Development, University of Otago, Dunedin 9054, New Zealand.

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http://dx.doi.org/10.1016/j.arr.2014.10.007DOI Listing
January 2015

Base-resolution DNA methylation landscape of zebrafish brain and liver.

Genom Data 2014 Dec 16;2:342-4. Epub 2014 Oct 16.

Gravida: National Centre for Growth and Development, 85 Park Road, Grafton, Auckland 1142, New Zealand ; Department of Zoology, University of Otago, 340 Great King Street, Dunedin 9054, New Zealand.

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http://dx.doi.org/10.1016/j.gdata.2014.10.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535936PMC
December 2014

The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer.

Nat Commun 2014 Nov 21;5:5383. Epub 2014 Nov 21.

1] Department of Pathology and Laboratory Medicine, Weill Medical College of Cornell University, 413 East 69th Street, Room 1402, New York, New York 10021, USA [2] Institute for Precision Medicine, Weill Medical College of Cornell University and New York Presbyterian Hospital, New York, New York 10021, USA.

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http://dx.doi.org/10.1038/ncomms6383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4241506PMC
November 2014