Shingo Nishikori

Shingo Nishikori

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Shingo Nishikori

Shingo Nishikori

Publications by authors named "Shingo Nishikori"

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27Publications

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Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition.

Cell Stem Cell 2018 12;23(6):787-793.e6

Department of Gastroenterology, Keio University School of Medicine, Tokyo 160-8582, Japan; Department of Organoid Medicine, Keio University School of Medicine, Tokyo 160-8582, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2018.11.016DOI Listing
December 2018

Reconstruction of the Human Colon Epithelium In Vivo.

Cell Stem Cell 2018 02 28;22(2):171-176.e5. Epub 2017 Dec 28.

Department of Gastroenterology, Keio University School of Medicine, Tokyo 160-8582, Japan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19345909173046
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http://dx.doi.org/10.1016/j.stem.2017.11.012DOI Listing
February 2018

Visualization and targeting of LGR5 human colon cancer stem cells.

Nature 2017 05 29;545(7653):187-192. Epub 2017 Mar 29.

Department of Gastroenterology, Keio University School of Medicine, Tokyo, Japan.

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http://dx.doi.org/10.1038/nature22081DOI Listing
May 2017

Microtubule severing by katanin p60 AAA+ ATPase requires the C-terminal acidic tails of both α- and β-tubulins and basic amino acid residues in the AAA+ ring pore.

J Biol Chem 2015 May 24;290(18):11762-70. Epub 2015 Mar 24.

From the Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto 860-0811, the Core Research for Evolutional Science and Technology, Japan Science and Technology Agency, Tokyo 102-0076, and

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http://dx.doi.org/10.1074/jbc.M114.614768DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416876PMC
May 2015

High-speed atomic force microscopic observation of ATP-dependent rotation of the AAA+ chaperone p97.

Structure 2013 Nov 19;21(11):1992-2002. Epub 2013 Sep 19.

Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto 860-0811, Japan; The Global COE (Cell Fate Regulation Research and Education Unit), Kumamoto University, Kumamoto 860-0811, Japan.

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http://dx.doi.org/10.1016/j.str.2013.08.017DOI Listing
November 2013

Broad ranges of affinity and specificity of anti-histone antibodies revealed by a quantitative peptide immunoprecipitation assay.

J Mol Biol 2012 Dec 2;424(5):391-9. Epub 2012 Oct 2.

Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1016/j.jmb.2012.09.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3502729PMC
December 2012

Positive cooperativity of the p97 AAA ATPase is critical for essential functions.

J Biol Chem 2011 May 18;286(18):15815-20. Epub 2011 Mar 18.

Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.

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http://dx.doi.org/10.1074/jbc.M110.201400DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091191PMC
May 2011

High-speed atomic force microscopy techniques for observing dynamic biomolecular processes.

Methods Enzymol 2010 ;475:541-64

Department of Physics, Kanazawa University, Kakuma-machi, Kanazawa, Japan.

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http://dx.doi.org/10.1016/S0076-6879(10)75020-5DOI Listing
October 2010

FtsH cleavage of non-native conformations of proteins.

J Struct Biol 2010 Aug 8;171(2):117-24. Epub 2010 May 8.

Departamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencias, Universidad de Zaragoza, Zaragoza 50009, Spain.

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http://dx.doi.org/10.1016/j.jsb.2010.05.001DOI Listing
August 2010

AAA+ chaperone ClpX regulates dynamics of prokaryotic cytoskeletal protein FtsZ.

J Biol Chem 2010 Feb 17;285(9):6648-57. Epub 2009 Dec 17.

Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Kumamoto 860-0811, Japan.

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http://dx.doi.org/10.1074/jbc.M109.080739DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2825460PMC
February 2010

Effect of phospholipids on conformational structure of bovine pancreatic trypsin inhibitor (BPTI) and its thermolabile mutants.

Biopolymers 2008 Oct;89(10):873-80

School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292, Japan.

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http://dx.doi.org/10.1002/bip.21029DOI Listing
October 2008

p97 Homologs from Caenorhabditis elegans, CDC-48.1 and CDC-48.2, suppress the aggregate formation of huntingtin exon1 containing expanded polyQ repeat.

Genes Cells 2008 Aug 31;13(8):827-38. Epub 2008 Jul 31.

Division of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Kumamoto 860-0811, Japan.

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http://dx.doi.org/10.1111/j.1365-2443.2008.01214.xDOI Listing
August 2008

From the common molecular basis of the AAA protein to various energy-dependent and -independent activities of AAA proteins.

Biochem Soc Trans 2008 Feb;36(Pt 1):68-71

Division of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto 860-0811, Japan.

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http://dx.doi.org/10.1042/BST0360068DOI Listing
February 2008

Chelation of cadmium ions by phytochelatin synthase: role of the cysteine-rich C-terminal.

Anal Sci 2008 Feb;24(2):277-81

School of Materials Science, Japan Advanced Institute of Science and Technology, Nomi, Ishikawa, Japan.

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February 2008

Caenorhabditis elegans p97/CDC-48 is crucial for progression of meiosis I.

Biochem Biophys Res Commun 2007 Jul 15;358(3):920-4. Epub 2007 May 15.

Division of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Kumamoto 860-0811, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2007.05.022DOI Listing
July 2007

Mutational analysis of the functional motifs in the ATPase domain of Caenorhabditis elegans fidgetin homologue FIGL-1: firm evidence for an intersubunit catalysis mechanism of ATP hydrolysis by AAA ATPases.

J Struct Biol 2006 Oct 29;156(1):93-100. Epub 2006 Mar 29.

Division of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Kumamoto 860-0811, Japan.

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http://dx.doi.org/10.1016/j.jsb.2006.03.001DOI Listing
October 2006

Diamines prevent thermal aggregation and inactivation of lysozyme.

J Biosci Bioeng 2005 Nov;100(5):556-61

School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan.

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http://dx.doi.org/10.1263/jbb.100.556DOI Listing
November 2005

Contribution of protein-surface ion pairs of a hyperthermophilic protein on thermal and thermodynamic stability.

J Biosci Bioeng 2004 ;97(1):75-7

School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S138917230470169
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http://dx.doi.org/10.1016/S1389-1723(04)70169-3DOI Listing
October 2005

Biophysical analysis of heat-induced structural maturation of glutamate dehydrogenase from a hyperthermophilic archaeon.

J Biosci Bioeng 2004 ;97(5):305-9

School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S138917230470210
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http://dx.doi.org/10.1016/S1389-1723(04)70210-8DOI Listing
October 2005

Comparative analysis of the two-step reaction catalyzed by prokaryotic and eukaryotic phytochelatin synthase by an ion-pair liquid chromatography assay.

Planta 2005 Sep 5;222(1):181-91. Epub 2005 Apr 5.

Environmental Biotechnology Laboratory, Graduate School of Pharmaceutical Sciences, Osaka University, Suita, 1-6 Yamadaoka, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1007/s00425-005-1513-9DOI Listing
September 2005

Unfolding mechanism of a hyperthermophilic protein O(6)-methylguanine-DNA methyltransferase.

Biophys Chem 2005 Jul 7;116(2):97-104. Epub 2005 Apr 7.

School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292, Japan.

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http://dx.doi.org/10.1016/j.bpc.2005.03.003DOI Listing
July 2005

High temperature increases the refolding yield of reduced lysozyme: implication for the productive process for folding.

Biotechnol Prog 2004 Jul-Aug;20(4):1128-33

School of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292, Japan.

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http://dx.doi.org/10.1021/bp034385bDOI Listing
February 2005

Equilibrium and kinetic stability of a hyperthermophilic protein, O6-methylguanine-DNA methyltransferase under various extreme conditions.

J Biochem 2004 Oct;136(4):503-8

School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292.

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http://dx.doi.org/10.1093/jb/mvh149DOI Listing
October 2004

Arginine ethylester prevents thermal inactivation and aggregation of lysozyme.

Eur J Biochem 2004 Aug;271(15):3242-7

School of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), Tatsunokuchi, Japan.

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http://dx.doi.org/10.1111/j.1432-1033.2004.04257.xDOI Listing
August 2004

Mutational effects on O(6)-methylguanine-DNA methyltransferase from hyperthermophile: contribution of ion-pair network to protein thermostability.

J Biochem 2004 Apr;135(4):525-32

School of Materials Science, Japan Advanced Institute for Science and Technology, 1-1 Asahidai, Tatsunokuchi, Ishikawa 923-1292.

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http://dx.doi.org/10.1093/jb/mvh061DOI Listing
April 2004

Characterization of phytochelatin synthase-like protein encoded by alr0975 from a prokaryote, Nostoc sp. PCC 7120.

Biochem Biophys Res Commun 2004 Mar;315(3):751-5

Environmental Biotechnology Laboratory, Graduate School of Pharmaceutical Sciences, Osaka University, Suita, 1-6 Yamadaoka, Osaka 565-0871, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S0006291X0400175
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http://dx.doi.org/10.1016/j.bbrc.2004.01.122DOI Listing
March 2004