Shin Kawano

Shin Kawano

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Shin Kawano

Publications by authors named "Shin Kawano"

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Role of the membrane potential in mitochondrial protein unfolding and import.

Sci Rep 2019 May 21;9(1):7637. Epub 2019 May 21.

Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan.

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http://dx.doi.org/10.1038/s41598-019-44152-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6529458PMC
May 2019

Porin Associates with Tom22 to Regulate the Mitochondrial Protein Gate Assembly.

Mol Cell 2019 03 6;73(5):1044-1055.e8. Epub 2019 Feb 6.

Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto 603-8555, Japan; Institute for Protein Dynamics, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto 603-8555, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2019.01.003DOI Listing
March 2019

Organelle contact zones as sites for lipid transfer.

J Biochem 2019 Feb;165(2):115-123

Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto, Japan.

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http://dx.doi.org/10.1093/jb/mvy088DOI Listing
February 2019

Myristoyl group-aided protein import into the mitochondrial intermembrane space.

Sci Rep 2019 02 4;9(1):1185. Epub 2019 Feb 4.

Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto, 603-8555, Japan.

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http://dx.doi.org/10.1038/s41598-018-38016-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6362269PMC
February 2019

Phospholipid transfer by ERMES components.

Aging (Albany NY) 2018 Apr;10(4):528-529

Kyoto Sangyo University, Faculty of Life Sciences and Institute for Protein Dynamics, Kamigamo-motoyama, Kyoto, Japan.

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http://dx.doi.org/10.18632/aging.101434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5940124PMC
April 2018

DBTSS/DBKERO for integrated analysis of transcriptional regulation.

Nucleic Acids Res 2018 01;46(D1):D229-D238

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Chiba, Japan.

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http://dx.doi.org/10.1093/nar/gkx1001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753362PMC
January 2018

Dialysis membrane-enforced microelectrode array measurement of diverse gut electrical activity.

Biosens Bioelectron 2017 Aug 11;94:312-320. Epub 2017 Apr 11.

Department of Cell Physiology, Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bios.2017.03.002DOI Listing
August 2017

Characterization of the targeting signal in mitochondrial β-barrel proteins.

Nat Commun 2016 06 27;7:12036. Epub 2016 Jun 27.

Interfaculty Institute of Biochemistry, University of Tuebingen, Hoppe-Seyler-Str. 4, 72076 Tuebingen, Germany.

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http://dx.doi.org/10.1038/ncomms12036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931251PMC
June 2016

In Vivo Curdlan/Cellulose Bionanocomposite Synthesis by Genetically Modified Gluconacetobacter xylinus.

Biomacromolecules 2015 Oct 11;16(10):3154-60. Epub 2015 Sep 11.

Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University , 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan.

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http://pubs.acs.org/doi/10.1021/acs.biomac.5b01075
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http://dx.doi.org/10.1021/acs.biomac.5b01075DOI Listing
October 2015

Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.

Nat Commun 2015 Aug 3;6:7922. Epub 2015 Aug 3.

1] Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto, 603-8555, Japan [2] JST/CREST, Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto, 603-8555, Japan [3] JST/CREST, Research Center for Materials Science, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan [4] Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan.

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http://dx.doi.org/10.1038/ncomms8922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4532887PMC
August 2015

GlycoRDF: an ontology to standardize glycomics data in RDF.

Bioinformatics 2015 Mar 11;31(6):919-25. Epub 2014 Nov 11.

Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, Faculty of Engineering, Soka University, Tokyo, Japan, Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btu732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380026PMC
March 2015

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data.

Nucleic Acids Res 2015 Jan 5;43(Database issue):D87-91. Epub 2014 Nov 5.

Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan

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http://dx.doi.org/10.1093/nar/gku1080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383915PMC
January 2015

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model.

Nucleic Acids Res 2014 Jul 14;42(Web Server issue):W442-8. Epub 2014 May 14.

Database Center for Life Science, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Chiba 277-0871, Japan.

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http://dx.doi.org/10.1093/nar/gku403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086138PMC
July 2014

WURCS: the Web3 unique representation of carbohydrate structures.

J Chem Inf Model 2014 Jun 4;54(6):1558-66. Epub 2014 Jun 4.

Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST) , Tsukuba, Ibaraki 305-8568, Japan.

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http://dx.doi.org/10.1021/ci400571eDOI Listing
June 2014

NMR analyses on the interactions of the yeast Tim50 C-terminal region with the presequence and Tim50 core domain.

FEBS Lett 2014 Mar 23;588(5):678-84. Epub 2014 Jan 23.

Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan; JST, CREST, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan; Structural Biology Research Center, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan. Electronic address:

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http://doi.wiley.com/10.1016/j.febslet.2013.12.037
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http://dx.doi.org/10.1016/j.febslet.2013.12.037DOI Listing
March 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

Introducing glycomics data into the Semantic Web.

J Biomed Semantics 2013 Nov 26;4(1):39. Epub 2013 Nov 26.

Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan.

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http://dx.doi.org/10.1186/2041-1480-4-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177142PMC
November 2013

Cellulose complementing factor (Ccp) is a new member of the cellulose synthase complex (terminal complex) in Acetobacter xylinum.

J Biosci Bioeng 2013 Jun 18;115(6):607-12. Epub 2013 Jan 18.

Graduate School of Chemical Sciences and Engineering, Hokkaido University, N13W8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan.

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http://dx.doi.org/10.1016/j.jbiosc.2012.12.021DOI Listing
June 2013

Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV.

Brief Bioinform 2012 Mar 29;13(2):258-68. Epub 2011 Jul 29.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1093/bib/bbr039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294242PMC
March 2012

Structural insight into the mitochondrial protein import system.

Biochim Biophys Acta 2011 Mar 23;1808(3):955-70. Epub 2010 Jul 23.

Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan.

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http://dx.doi.org/10.1016/j.bbamem.2010.07.018DOI Listing
March 2011

BamE structure: the assembly of β-barrel proteins in the outer membranes of bacteria and mitochondria.

EMBO Rep 2011 Feb 21;12(2):94-5. Epub 2011 Jan 21.

Department of Chemistry, Graduate School of Science, Nagoya University, Nagoya, Japan.

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http://dx.doi.org/10.1038/embor.2010.217DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3049440PMC
February 2011

Structural basis for the disulfide relay system in the mitochondrial intermembrane space.

Antioxid Redox Signal 2010 Nov;13(9):1359-73

Department of Chemistry, Nagoya University, Japan.

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http://www.liebertpub.com/doi/10.1089/ars.2010.3099
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http://dx.doi.org/10.1089/ars.2010.3099DOI Listing
November 2010

Structural basis for unfolding pathway-dependent stability of proteins: vectorial unfolding versus global unfolding.

Protein Sci 2010 Apr;19(4):693-702

Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan.

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http://dx.doi.org/10.1002/pro.346DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2867010PMC
April 2010

Structural basis of yeast Tim40/Mia40 as an oxidative translocator in the mitochondrial intermembrane space.

Proc Natl Acad Sci U S A 2009 Aug 10;106(34):14403-7. Epub 2009 Aug 10.

Department of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan.

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http://dx.doi.org/10.1073/pnas.0901793106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732879PMC
August 2009

Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.

Carbohydr Res 2009 May 9;344(7):881-7. Epub 2009 Mar 9.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1016/j.carres.2009.03.001DOI Listing
May 2009

Regulation of endoglucanase gene (cmcax) expression in Acetobacter xylinum.

J Biosci Bioeng 2008 Jul;106(1):88-94

Division of Biotechnology and Molecular Chemistry, Graduate School of Engineering, Hokkaido University, N13W8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan.

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http://dx.doi.org/10.1263/jbb.106.88DOI Listing
July 2008

Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets.

Nucleic Acids Symp Ser (Oxf) 2007 (51):245-6

Department of Chemistry, University of Tsukuba.Tsukuba 305-8571, Japan.

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http://dx.doi.org/10.1093/nass/nrm123DOI Listing
April 2008

Characterization of N-terminal amino group-heme ligation emerging upon guanidine hydrochloric acid induced unfolding of Hydrogenobacter thermophilus ferricytochrome c552.

J Biol Inorg Chem 2008 Jan 22;13(1):25-34. Epub 2007 Sep 22.

Department of Chemistry, University of Tsukuba, Tsukuba, 305-8571, Japan.

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http://link.springer.com/10.1007/s00775-007-0298-7
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http://dx.doi.org/10.1007/s00775-007-0298-7DOI Listing
January 2008

Local conformational transition of Hydrogenobacter thermophilus cytochrome c552 relevant to its redox potential.

Biochemistry 2007 Aug 21;46(32):9215-24. Epub 2007 Jul 21.

Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan.

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http://dx.doi.org/10.1021/bi7000714DOI Listing
August 2007

Heme orientational disorder in human adult hemoglobin reconstituted with a ring fluorinated heme and its functional consequences.

Biochem Biophys Res Commun 2007 Mar 10;354(3):681-5. Epub 2007 Jan 10.

Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2007.01.010DOI Listing
March 2007

Structural characterization of the Acetobacter xylinum endo-beta-1,4-glucanase CMCax required for cellulose biosynthesis.

Proteins 2006 Sep;64(4):1069-77

Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.

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http://doi.wiley.com/10.1002/prot.21052
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http://dx.doi.org/10.1002/prot.21052DOI Listing
September 2006

Crystal structures of the Nicotiana glutinosa ribonuclease NT in complex with nucleoside monophosphates.

J Biochem 2006 Sep 26;140(3):375-81. Epub 2006 Jul 26.

Laboratory of Biochemistry, Department of Bioscience and Biotechnology, Faculty of Agriculture, Graduate School, Kyushu University, Hakozaki 6-10-1, Higashi-ku, Fukuoka 812-8581.

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http://academic.oup.com/jb/article/140/3/375/2182176/Crystal
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http://dx.doi.org/10.1093/jb/mvj164DOI Listing
September 2006

Further enhancement of the thermostability of Hydrogenobacter thermophilus cytochrome c552.

Biochemistry 2006 Sep;45(36):11005-11

Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan.

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http://dx.doi.org/10.1021/bi061164gDOI Listing
September 2006

KEGG as a glycome informatics resource.

Glycobiology 2006 May 13;16(5):63R-70R. Epub 2005 Jul 13.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1093/glycob/cwj010DOI Listing
May 2006

Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme.

J Mol Biol 2006 Mar 11;357(2):583-91. Epub 2006 Jan 11.

Laboratory of Biochemistry, Department of Bioscience and Biotechnology, Faculty of Agriculture, Graduate School, Kyushu University, Fukuoka 812-8581, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S002228360501676
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http://dx.doi.org/10.1016/j.jmb.2005.12.086DOI Listing
March 2006

A global representation of the carbohydrate structures: a tool for the analysis of glycan.

Genome Inform 2005 ;16(1):214-22

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.

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January 2006

Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.

Bioinformatics 2005 Nov 13;21(21):3976-82. Epub 2005 Sep 13.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1093/bioinformatics/bti666DOI Listing
November 2005

Effects of endogenous endo-beta-1,4-glucanase on cellulose biosynthesis in Acetobacter xylinum ATCC23769.

J Biosci Bioeng 2002 ;94(3):275-81

Division of Molecular Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan.

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http://dx.doi.org/10.1263/jbb.94.275DOI Listing
November 2005

Cross-polarization/magic-angle spinning 13C nuclear magnetic resonance study of cellulose I-ethylenediamine complex.

J Biosci Bioeng 2003 ;96(5):461-6

Division of Molecular Chemistry, Graduate School of Engineering, Hokkaido University, Kita 13, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan.

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http://dx.doi.org/10.1016/S1389-1723(03)70132-7DOI Listing
November 2005

Crystallization and preliminary crystallographic analysis of the cellulose biosynthesis-related protein CMCax from Acetobacter xylinum.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2005 Feb 1;61(Pt 2):252-4. Epub 2005 Feb 1.

Division of Molecular Chemistry, Graduate School of Engineering, Hokkaido University, Kita-13, Nishi-8, Sapporo, Hokkaido 060-8628, Japan.

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http://dx.doi.org/10.1107/S174430910500206XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1952249PMC
February 2005

Guanine binding site of the Nicotiana glutinosa ribonuclease NW revealed by X-ray crystallography.

Biochemistry 2002 Dec;41(51):15195-202

Laboratory of Biochemistry, Department of Bioscience and Biotechnology, Faculty of Agriculture, Graduate School, Kyushu University, Fukuoka 812-8581, Japan.

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http://dx.doi.org/10.1021/bi026247lDOI Listing
December 2002

Cloning of cellulose synthesis related genes from Acetobacter xylinum ATCC23769 and ATCC53582: comparison of cellulose synthetic ability between strains.

DNA Res 2002 Oct;9(5):149-56

Division of Molecular Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan.

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http://dx.doi.org/10.1093/dnares/9.5.149DOI Listing
October 2002

Expression of Nicotiana glutinosa ribonucleases in Escherichia coli.

Biosci Biotechnol Biochem 2002 Apr;66(4):910-2

Department of Bioscience and Biotechnology, Faculty of Agriculture, Graduate School, Kyushu University, Fukuoka, Japan.

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http://dx.doi.org/10.1271/bbb.66.910DOI Listing
April 2002

Molecular cloning of cDNAs encoding ribonuclease-related proteins in Nicotiana glutinosa leaves, as induced in response to wounding or to TMV-infection.

Biosci Biotechnol Biochem 2002 Feb;66(2):391-7

Department of Bioscience and Biotechnology, Faculty of Agriculture, Graduate School, Kyushu University, Fukuoka, Japan.

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http://dx.doi.org/10.1271/bbb.66.391DOI Listing
February 2002