Shili Lin

Shili Lin

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Shili Lin

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A Family-Based Rare Haplotype Association Method for Quantitative Traits.

Hum Hered 2018 21;83(4):175-195. Epub 2019 Feb 21.

Department of Mathematical Sciences, University of Texas at Dallas, Richardson, Texas, USA,

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http://dx.doi.org/10.1159/000493543DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6521833PMC
August 2019

Sparse Treatment-Effect Model for Taxon Identification with High-Dimensional Metagenomic Data.

Methods Mol Biol 2018 ;1849:309-318

Department of Statistics, The Ohio State University, Columbus, OH, USA.

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http://link.springer.com/10.1007/978-1-4939-8728-3_19
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http://dx.doi.org/10.1007/978-1-4939-8728-3_19DOI Listing
July 2019

Indirect effect inference and application to GAW20 data.

BMC Genet 2018 09 17;19(Suppl 1):67. Epub 2018 Sep 17.

State Key Laboratory of Genetic Engineering, Institute of Biostatistics, School of Life Sciences, Fudan University, 2005 Songhu Road, Shanghai, 200438, China.

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http://dx.doi.org/10.1186/s12863-018-0638-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157197PMC
September 2018

Logistic Bayesian LASSO for detecting association combining family and case-control data.

BMC Proc 2018 17;12(Suppl 9):54. Epub 2018 Sep 17.

1Department of Statistics, The Ohio State University, 1958 Neil Avenue, Columbus, OH 43210 USA.

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https://bmcproc.biomedcentral.com/articles/10.1186/s12919-01
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http://dx.doi.org/10.1186/s12919-018-0139-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6156907PMC
September 2018

Logistic Bayesian LASSO for genetic association analysis of data from complex sampling designs.

J Hum Genet 2017 Sep 20;62(9):819-829. Epub 2017 Apr 20.

Department of Mathematical Sciences, University of Texas at Dallas, Richardson, TX, USA.

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http://dx.doi.org/10.1038/jhg.2017.43DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5572548PMC
September 2017

Are rare variants really independent?

Genet Epidemiol 2017 05 16;41(4):363-371. Epub 2017 Mar 16.

Department of Statistics, The Ohio State University, Columbus, Ohio, United States of America.

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http://doi.wiley.com/10.1002/gepi.22039
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http://dx.doi.org/10.1002/gepi.22039DOI Listing
May 2017

A random effect model for reconstruction of spatial chromatin structure.

Biometrics 2017 03 23;73(1):52-62. Epub 2016 May 23.

Department of Statistics, The Ohio State University, Columbus, Ohio 43210, U.S.A.

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http://dx.doi.org/10.1111/biom.12544DOI Listing
March 2017

Detecting rare and common haplotype-environment interaction under uncertainty of gene-environment independence assumption.

Biometrics 2017 03 1;73(1):344-355. Epub 2016 Aug 1.

Department of Mathematical Sciences, University of Texas at Dallas, Richardson, Texas 75080, U.S.A.

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http://dx.doi.org/10.1111/biom.12567DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5288316PMC
March 2017

Block-based association tests for rare variants using Kullback-Leibler divergence.

J Hum Genet 2016 Nov 14;61(11):965-975. Epub 2016 Jul 14.

Department of Statistics, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1038/jhg.2016.90DOI Listing
November 2016

Optimum study design for detecting imprinting and maternal effects based on partial likelihood.

Biometrics 2016 Mar 19;72(1):95-105. Epub 2015 Aug 19.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, Columbus, Ohio 43210, U.S.A.

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http://dx.doi.org/10.1111/biom.12380DOI Listing
March 2016

Sparse Inverse Covariance Estimation with L0 Penalty for Network Construction with Omics Data.

J Comput Biol 2016 Mar 1;23(3):192-202. Epub 2016 Feb 1.

1 Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center , Los Angeles, California.

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http://dx.doi.org/10.1089/cmb.2015.0102DOI Listing
March 2016

Impact of data resolution on three-dimensional structure inference methods.

BMC Bioinformatics 2016 Feb 6;17:70. Epub 2016 Feb 6.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, Columbus, OH, USA.

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http://dx.doi.org/10.1186/s12859-016-0894-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4744395PMC
February 2016

Network construction and structure detection with metagenomic count data.

BioData Min 2015 12;8:40. Epub 2015 Dec 12.

Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, 90048 CA USA.

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http://dx.doi.org/10.1186/s13040-015-0072-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676895PMC
December 2015

Kullback-Leibler divergence for detection of rare haplotype common disease association.

Authors:
Shili Lin

Eur J Hum Genet 2015 Nov 4;23(11):1558-65. Epub 2015 Mar 4.

Department of Statistics, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1038/ejhg.2015.25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4613467PMC
November 2015

Statistical models for detecting differential chromatin interactions mediated by a protein.

PLoS One 2014 16;9(5):e97560. Epub 2014 May 16.

Department of Statistics, The Ohio State University, Columbus, Ohio, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0097560PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023970PMC
August 2015

BOG: R-package for Bacterium and virus analysis of Orthologous Groups.

Comput Struct Biotechnol J 2015 21;13:366-9. Epub 2015 May 21.

Department of Statistics, State University, USA.

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http://dx.doi.org/10.1016/j.csbj.2015.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4475783PMC
June 2015

GrammR: graphical representation and modeling of count data with application in metagenomics.

Bioinformatics 2015 May 20;31(10):1648-54. Epub 2015 Jan 20.

Department of Statistics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv032DOI Listing
May 2015

Kullback-Leibler distance methods for detecting disease association with rare variants from sequencing data.

Ann Hum Genet 2015 May 27;79(3):199-208. Epub 2015 Feb 27.

Statistics Department, The Ohio State University, Columbus, OH, USA; The Ohio State University, Newark, OH, USA.

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http://dx.doi.org/10.1111/ahg.12103DOI Listing
May 2015

A mixture modeling framework for differential analysis of high-throughput data.

Comput Math Methods Med 2014 25;2014:758718. Epub 2014 Jun 25.

Department of Statistics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1155/2014/758718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4095709PMC
March 2015

A Bayesian mixture model for chromatin interaction data.

Authors:
Liang Niu Shili Lin

Stat Appl Genet Mol Biol 2015 Feb;14(1):53-64

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https://www.degruyter.com/view/j/sagmb.2015.14.issue-1/sagmb
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http://dx.doi.org/10.1515/sagmb-2014-0029DOI Listing
February 2015

Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer.

EMBO J 2015 Feb 22;34(4):502-16. Epub 2014 Dec 22.

Department of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA

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http://dx.doi.org/10.15252/embj.201490306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4331004PMC
February 2015

PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.

Bioinformatics 2014 Dec 31;30(24):3567-74. Epub 2014 Aug 31.

College of Medicine, Biomedical Sciences Graduate Program, Department of Internal Medicine, Division of Hematology, Department of Statistics, Mathematical Biosciences Institute, Department of Physics, Department of Chemistry & Biochemistry and Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA College of Medicine, Biomedical Sciences Graduate Program, Department of Internal Medicine, Division of Hematology, Department of Statistics, Mathematical Biosciences Institute, Department of Physics, Department of Chemistry & Biochemistry and Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA College of Medicine, Biomedical Sciences Graduate Program, Department of Internal Medicine, Division of Hematology, Department of Statistics, Mathematical Biosciences Institute, Department of Physics, Department of Chemistry & Biochemistry and Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA College of Medicine, Biomedical Sciences Graduate Program, Department of Internal Medicine, Division of Hematology, Department of Statistics, Mathematical Biosciences Institute, Department of Physics, Department of Chemistry & Biochemistry and Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253832PMC
December 2014

Detection of imprinting effects for hypertension based on general pedigrees utilizing all affected and unaffected individuals.

BMC Proc 2014 17;8(Suppl 1):S52. Epub 2014 Jun 17.

Department of Statistics, The Ohio State University, 1958 Neil Avenue Columbus, OH, 43210, USA.

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http://dx.doi.org/10.1186/1753-6561-8-S1-S52DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143886PMC
December 2014

Identifying rare variant associations in population-based and family-based designs.

BMC Proc 2014 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S58. Epub 2014 Jun 17.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1186/1753-6561-8-S1-S58DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143803PMC
December 2014

Detecting longitudinal effects of haplotypes and smoking on hypertension using B-splines and Bayesian LASSO.

BMC Proc 2014 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S85. Epub 2014 Jun 17.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, Columbus, OH 43210-1247, USA.

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http://bmcproc.biomedcentral.com/articles/10.1186/1753-6561-
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http://dx.doi.org/10.1186/1753-6561-8-S1-S85DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143712PMC
December 2014

Blocking approach for identification of rare variants in family-based association studies.

PLoS One 2014 23;9(1):e86126. Epub 2014 Jan 23.

Statistics Department, The Ohio State University, Columbus, Ohio, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086126PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3900483PMC
November 2014

Nonparametric method for detecting imprinting effect using all members of general pedigrees with missing data.

J Hum Genet 2014 Oct 14;59(10):541-8. Epub 2014 Aug 14.

Department of Statistics, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1038/jhg.2014.67DOI Listing
October 2014

FamLBL: detecting rare haplotype disease association based on common SNPs using case-parent triads.

Authors:
Meng Wang Shili Lin

Bioinformatics 2014 Sep 21;30(18):2611-8. Epub 2014 May 21.

Department of Statistics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155250PMC
September 2014

Gender Differences in Pulmonary Function, Respiratory Symptoms, and Macrophage Proteomics among HIV-Infected Smokers.

Scientifica (Cairo) 2014 4;2014:613689. Epub 2014 Mar 4.

Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, The Ohio State University Medical Center, Columbus, OH, USA.

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http://www.hindawi.com/journals/scientifica/2014/613689/
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http://dx.doi.org/10.1155/2014/613689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3960768PMC
April 2014

Detecting rare haplotype-environment interaction with logistic Bayesian LASSO.

Genet Epidemiol 2014 Jan 23;38(1):31-41. Epub 2013 Nov 23.

Department of Mathematical Sciences, University of Texas at Dallas, Richardson, Texas, United States of America.

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http://doi.wiley.com/10.1002/gepi.21773
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http://dx.doi.org/10.1002/gepi.21773DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4174302PMC
January 2014

Joint detection of association, imprinting and maternal effects using all children and their parents.

Eur J Hum Genet 2013 Dec 27;21(12):1449-56. Epub 2013 Mar 27.

State Key Laboratory of Genetic Engineering, Institute of Biostatistics, School of Life Sciences, Fudan University, Shanghai, China.

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http://www.stat.osu.edu/~shili/PAPERS/2013_ejhg_LIME.pdf
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http://www.nature.com/doifinder/10.1038/ejhg.2013.49
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http://dx.doi.org/10.1038/ejhg.2013.49DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3831068PMC
December 2013

Regularization in finite mixture of regression models with diverging number of parameters.

Biometrics 2013 Jun 4;69(2):436-46. Epub 2013 Apr 4.

Department of Mathematics and Statistics, McGill University, Montreal, Quebec, Canada H3A 2K6.

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http://dx.doi.org/10.1111/biom.12020DOI Listing
June 2013

An optimum projection and noise reduction approach for detecting rare and common variants associated with complex diseases.

Hum Hered 2012 13;74(1):51-60. Epub 2012 Nov 13.

Department of Statistics, The Ohio State University, Columbus, Ohio 43055, USA.

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https://www.karger.com/Article/FullText/343797
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http://dx.doi.org/10.1159/000343797DOI Listing
April 2013

Integrative genome-wide chromatin signature analysis using finite mixture models.

BMC Genomics 2012 26;13 Suppl 6:S3. Epub 2012 Oct 26.

Department of Statistics, The Ohio State University, Columbus, Ohio 43210, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-S6-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3481451PMC
April 2013

A confidence set inference method for identifying SNPs that regulate quantitative phenotypes.

Hum Hered 2012 4;73(3):174-83. Epub 2012 Jul 4.

Department of Mathematics, Physics, and Statistics, University of the Sciences, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1159/000339178DOI Listing
November 2012

Logistic Bayesian LASSO for identifying association with rare haplotypes and application to age-related macular degeneration.

Biometrics 2012 Jun 28;68(2):587-97. Epub 2011 Sep 28.

Department of Biostatistics, School of Public Health, University of North Texas Health Science Center, Fort Worth, Texas 76107, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2011.01680.xDOI Listing
June 2012

Likelihood approach for detecting imprinting and in utero maternal effects using general pedigrees from prospective family-based association studies.

Biometrics 2012 Jun 18;68(2):477-85. Epub 2011 Oct 18.

Department of Statistics, The Ohio State University, 404 Cockins Hall, 1958 Neil Avenue, Columbus, Ohio 43210, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2011.01695.xDOI Listing
June 2012

Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF.

Nucleic Acids Res 2012 Jun 16;40(11):4754-64. Epub 2012 Feb 16.

Department of Statistics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/nar/gks139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367180PMC
June 2012

Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization.

Methods Mol Biol 2012 ;802:275-91

Department of Molecular Virology, Immunology & Medical Genetics, The Ohio State University, Columbus, OH, USA.

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http://link.springer.com/10.1007/978-1-61779-400-1_18
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http://dx.doi.org/10.1007/978-1-61779-400-1_18DOI Listing
April 2012

Gene-based partial least-squares approaches for detecting rare variant associations with complex traits.

BMC Proc 2011 Nov 29;5 Suppl 9:S19. Epub 2011 Nov 29.

Department of Statistics, The Ohio State University, 1179 University Drive, Newark, OH 43055, USA.

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http://dx.doi.org/10.1186/1753-6561-5-S9-S19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287853PMC
November 2011

ADAMTS13 activity and antigen during therapy and follow-up of patients with idiopathic thrombotic thrombocytopenic purpura: correlation with clinical outcome.

Haematologica 2011 Oct 23;96(10):1521-7. Epub 2011 May 23.

Department of Pathology, College of Medicine, Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.3324/haematol.2011.042945DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3186314PMC
October 2011

Detection of parent-of-origin effects for quantitative traits in complete and incomplete nuclear families with multiple children.

Am J Epidemiol 2011 Jul 1;174(2):226-33. Epub 2011 Jun 1.

Department of Statistics and Actuarial Science, Faculty of Science, University of Hong Kong, China.

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https://academic.oup.com/aje/article-lookup/doi/10.1093/aje/
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http://dx.doi.org/10.1093/aje/kwr056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3167678PMC
July 2011

DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models.

Bioinformatics 2011 Jun 5;27(11):1569-70. Epub 2011 Apr 5.

Department of Molecular Virology, Immunology and Medical Genetics and Department of Statistics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102220PMC
June 2011

Preprocessing differential methylation hybridization microarray data.

BioData Min 2011 May 16;4:13. Epub 2011 May 16.

Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, Ohio, 44106, USA.

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http://dx.doi.org/10.1186/1756-0381-4-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118966PMC
May 2011

Identifying hypermethylated CpG islands using a quantile regression model.

BMC Bioinformatics 2011 Feb 15;12:54. Epub 2011 Feb 15.

Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, Ohio, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-12-54DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051900PMC
February 2011

Feature selection in finite mixture of sparse normal linear models in high-dimensional feature space.

Biostatistics 2011 Jan 16;12(1):156-72. Epub 2010 Aug 16.

Department of Mathematics and Statistics, McGill University, Montreal, Quebec H3A 2K6, Canada.

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http://dx.doi.org/10.1093/biostatistics/kxq048DOI Listing
January 2011

Space oriented rank-based data integration.

Authors:
Shili Lin

Stat Appl Genet Mol Biol 2010 9;9:Article20. Epub 2010 Apr 9.

The Ohio State University, USA.

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https://www.degruyter.com/view/j/sagmb.2010.9.1/sagmb.2010.9
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http://dx.doi.org/10.2202/1544-6115.1534DOI Listing
July 2010

Sparse support vector machines with Lp penalty for biomarker identification.

IEEE/ACM Trans Comput Biol Bioinform 2010 Jan-Mar;7(1):100-7

Division of Biostatistics and Bioinformatics, Department of Epidemiology and Preventive Medicine, Greenebaum Cancer Center, School of Medicine, University of Maryland, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1109/TCBB.2008.17DOI Listing
May 2010

Detection of parent-of-origin effects using general pedigree data.

Genet Epidemiol 2010 Feb;34(2):151-8

Department of Statistics and Actuarial Science, The University of Hong Kong, China.

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http://dx.doi.org/10.1002/gepi.20445DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3011930PMC
February 2010

A likelihood-based procedure for obtaining confidence intervals of disease loci with general pedigree data.

BMC Proc 2007 18;1 Suppl 1:S106. Epub 2007 Dec 18.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, 404 Cockins Hall, Columbus, Ohio 43210, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367465PMC
http://dx.doi.org/10.1186/1753-6561-1-s1-s106DOI Listing
December 2009

Confidence intervals for putative quantitative trait loci - development and applications of new linkage methods.

BMC Proc 2007 18;1 Suppl 1:S91. Epub 2007 Dec 18.

Department of Human Genetics, University of Chicago, 920 East 57th Street, Chicago, Illinois 60637, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367503PMC
http://dx.doi.org/10.1186/1753-6561-1-s1-s91DOI Listing
December 2009

Identifying differentially methylated genes using mixed effect and generalized least square models.

BMC Bioinformatics 2009 Dec 9;10:404. Epub 2009 Dec 9.

Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, Ohio 44106, USA.

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http://dx.doi.org/10.1186/1471-2105-10-404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800121PMC
December 2009

Detection of imprinting and heterogeneous maternal effects on high blood pressure using Framingham Heart Study data.

BMC Proc 2009 Dec 15;3 Suppl 7:S125. Epub 2009 Dec 15.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, Cockins Hall, Room 404, Columbus, Ohio 43210-1247, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795898PMC
http://dx.doi.org/10.1186/1753-6561-3-s7-s125DOI Listing
December 2009

Haplotype association analysis of North American Rheumatoid Arthritis Consortium data using a generalized linear model with regularization.

BMC Proc 2009 Dec 15;3 Suppl 7:S32. Epub 2009 Dec 15.

Department of Statistics, The Ohio State University, Columbus, Ohio 43210 USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795930PMC
http://dx.doi.org/10.1186/1753-6561-3-s7-s32DOI Listing
December 2009

Detection of parent-of-origin effects based on complete and incomplete nuclear families with multiple affected children.

Hum Hered 2009 17;67(1):1-12. Epub 2008 Oct 17.

Department of Statistics and Actuarial Science, University of Hong Kong, Hong Kong, China.

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https://www.karger.com/Article/FullText/164394
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http://dx.doi.org/10.1159/000164394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2868914PMC
October 2009

Methylation analysis by microarray.

Methods Mol Biol 2009 ;556:117-39

Human Cancer Genetics Program, The Ohio State University Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1007/978-1-60327-192-9_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2838393PMC
September 2009

Comparative study on ChIP-seq data: normalization and binding pattern characterization.

Bioinformatics 2009 Sep 26;25(18):2334-40. Epub 2009 Jun 26.

Department of Molecular Virology, Immunology & Medical Genetics, Ohio State University, Columbus, OH 43210, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btp384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800347PMC
September 2009

Generalized linear modeling with regularization for detecting common disease rare haplotype association.

Authors:
Wei Guo Shili Lin

Genet Epidemiol 2009 May;33(4):308-16

Department of Statistics, The Ohio State University, Columbus, Ohio 43210-1247, USA.

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http://dx.doi.org/10.1002/gepi.20382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752471PMC
May 2009

Integration of ranked lists via cross entropy Monte Carlo with applications to mRNA and microRNA Studies.

Authors:
Shili Lin Jie Ding

Biometrics 2009 Mar 13;65(1):9-18. Epub 2008 May 13.

Department of Statistics, The Ohio State University, Columbus, Ohio 43210-1247, USA.

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March 2009

Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray.

Methods Mol Biol 2009 ;507:89-106

Human Cancer Genetics Program, The Ohio State University Comprehensive Cancer Center, Columbus, OH, USA.

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March 2009

Detection of parent-of-origin effects in complete and incomplete nuclear families with multiple affected children using multiple tightly linked markers.

Hum Hered 2009 12;67(2):116-27. Epub 2008 Dec 12.

Department of Statistics and Actuarial Science, The University of Hong Kong, Hong Kong, China.

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http://dx.doi.org/10.1159/000179559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018706PMC
March 2009

A Robust Unified Approach to Analyzing Methylation and Gene Expression Data.

Comput Stat Data Anal 2009 Mar;53(5):1701-1710

Department of Statistics, The Ohio State University, Columbus, OH 43210, United States.

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http://dx.doi.org/10.1016/j.csda.2008.07.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2701240PMC
March 2009

Effect of prophylactic cyclosporine therapy on ADAMTS13 biomarkers in patients with idiopathic thrombotic thrombocytopenic purpura.

Am J Hematol 2008 Dec;83(12):911-5

Division of Hematology/Oncology, Department of Internal Medicine, Ohio State University, College of Medicine and Public Health, Columbus, Ohio 43210, USA.

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http://dx.doi.org/10.1002/ajh.21281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2824143PMC
December 2008

Probe signal correction for differential methylation hybridization experiments.

BMC Bioinformatics 2008 Oct 23;9:453. Epub 2008 Oct 23.

Human Cancer Genetics Program, OSU Comprehensive Cancer Center, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1186/1471-2105-9-453DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2603337PMC
October 2008

Serial analysis of gene expression profiles of adult and aged mouse cerebellum.

Neurobiol Aging 2008 May 30;29(5):774-88. Epub 2007 Jan 30.

Department of Pharmacology, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1016/j.neurobiolaging.2006.12.006DOI Listing
May 2008

Relationship between ADAMTS13 activity in clinical remission and the risk of TTP relapse.

Br J Haematol 2008 May 7;141(5):651-8. Epub 2008 Apr 7.

Department of Pathology, College of Medicine, Ohio State University, Columbus, OH 43210, USA.

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May 2008

XMCPDT does have correct type I error rates.

Authors:
Jie Ding Shili Lin

Am J Hum Genet 2008 Feb;82(2):528-30; author reply 530-1

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http://dx.doi.org/10.1016/j.ajhg.2007.11.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427256PMC
February 2008

MicroRNAs modulate the chemosensitivity of tumor cells.

Mol Cancer Ther 2008 Jan 9;7(1):1-9. Epub 2008 Jan 9.

Program of Pharmacogenomics, Department of Pharmacology, Ohio State University, 333 West Tenth Street, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1158/1535-7163.MCT-07-0573DOI Listing
January 2008

Incorporating covariates in mapping heterogeneous traits: a hierarchical model using empirical Bayes estimation.

Genet Epidemiol 2007 Nov;31(7):684-96

Department of Biostatistics, School of Public Health, University of North Texas Health Science Center, Fort Worth, TX 76107-2699, USA.

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http://dx.doi.org/10.1002/gepi.20233DOI Listing
November 2007

Mixture modeling of progression pathways of heterogeneous breast tumors.

Authors:
Shili Lin

J Theor Biol 2007 Nov 28;249(2):254-61. Epub 2007 Aug 28.

Department of Statistics and Mathematical Biosciences Institute, The Ohio State University, Columbus, OH 43210, USA.

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November 2007

Cyclosporin and plasma exchange in thrombotic thrombocytopenic purpura: long-term follow-up with serial analysis of ADAMTS13 activity.

Br J Haematol 2007 Nov;139(3):486-93

Division of Hematology/Oncology, Department of Internal Medicine, Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1111/j.1365-2141.2007.06819.xDOI Listing
November 2007

Clinical characteristics and mode of inheritance of familial focal seizures in Standard Poodles.

J Am Vet Med Assoc 2007 Nov;231(10):1520-8

Department of Psychology, Office of the Vice President for Research, Florida State University, Tallahassee, FL 32306, USA.

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http://dx.doi.org/10.2460/javma.231.10.1520DOI Listing
November 2007

Modeling and analysis of multi-library, multi-group SAGE data with application to a study of mouse cerebellum.

Biometrics 2007 Sep;63(3):777-86

Mathematical Biosciences Institute, The Ohio State University, Columbus, Ohio 43210, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2006.00733.xDOI Listing
September 2007

Photoperiod reverses the effects of estrogens on male aggression via genomic and nongenomic pathways.

Proc Natl Acad Sci U S A 2007 Jun 24;104(23):9840-5. Epub 2007 May 24.

Department of Psychology, Institute for Behavioral Medicine Research, Ohio State University, Columbus, OH 43210, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0701819104
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1876655PMC
June 2007

MicroRNA expression profiles for the NCI-60 cancer cell panel.

Mol Cancer Ther 2007 May 4;6(5):1483-91. Epub 2007 May 4.

Program of Pharmacogenomics, Department of Pharmacology and the Comprehensive Cancer Center, College of Medicine, The Ohio State University, 5072 Graves Hall, 333 West 10th Avenue, Columbus, OH 43210, USA.

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May 2007

A dinucleotide deletion in CD24 confers protection against autoimmune diseases.

PLoS Genet 2007 Apr 21;3(4):e49. Epub 2007 Feb 21.

Division of Immunotherapy, Department of Surgery, Comprehensive Cancer Center, University of Michigan, Ann Arbor, Michigan, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.0030049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847692PMC
April 2007

Gamma-Normal-Gamma mixture model for detecting differentially methylated loci in three breast cancer cell lines.

Cancer Inform 2007 Feb 7;3:43-54. Epub 2007 Feb 7.

Department of Statistics, The Ohio State University, Columbus, OH 43210-1247, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675845PMC
February 2007

Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data.

BMC Bioinformatics 2007 Feb 1;8:38. Epub 2007 Feb 1.

Mathematical Biosciences Institute, The Ohio State University, 231 W, 18th Avenue, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1186/1471-2105-8-38DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800873PMC
February 2007

A comparison of methods for intermediate fine mapping.

Genet Epidemiol 2006 Dec;30(8):677-89

Department of Human Genetics, University of Chicago, Illinois, USA.

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http://dx.doi.org/10.1002/gepi.20179DOI Listing
December 2006

Genome-wide tagging SNPs with entropy-based Monte Carlo method.

J Comput Biol 2006 Nov;13(9):1606-14

Division of Biostatistics, University of Maryland Greenebaum Cancer Center, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1089/cmb.2006.13.1606DOI Listing
November 2006

Monte Carlo pedigree disequilibrium test for markers on the X chromosome.

Am J Hum Genet 2006 Sep 1;79(3):567-73. Epub 2006 Aug 1.

Department of Statistics, The Ohio State University, Columbus, OH 43210-1247, USA.

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http://dx.doi.org/10.1086/507609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1559546PMC
September 2006

Microarray analysis of gene expression: considerations in data mining and statistical treatment.

Physiol Genomics 2006 May 22;25(3):355-63. Epub 2006 Mar 22.

Davis Heart and Lung Research Institute, Department of Surgery, The Ohio State University, Columbus, Ohio, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00314.2004DOI Listing
May 2006

A two-step procedure for constructing confidence intervals of trait loci with application to a rheumatoid arthritis dataset.

Genet Epidemiol 2006 Jan;30(1):18-29

Department of Statistics, Ohio State University, Columbus, 43210, USA.

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http://doi.wiley.com/10.1002/gepi.20123
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January 2006

Microsatellites versus Single-Nucleotide Polymorphisms in confidence interval estimation of disease loci.

Genet Epidemiol 2006 Jan;30(1):3-17

Department of Statistics, Ohio State University, Columbus, 43210, USA.

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http://dx.doi.org/10.1002/gepi.20122DOI Listing
January 2006

A new Bayesian approach incorporating covariate information for heterogeneity and its comparison with HLOD.

BMC Genet 2005 Dec 30;6 Suppl 1:S138. Epub 2005 Dec 30.

Department of Biostatistics, The University of North Texas Health Sciences Center, Fort Worth, TX 76107-2699, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866798PMC
December 2005

Interval estimation of disease loci: development and applications of new linkage methods.

BMC Genet 2005 Dec 30;6 Suppl 1:S21. Epub 2005 Dec 30.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1186/1471-2156-6-S1-S21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866765PMC
December 2005

Comparisons of methods for linkage analysis and haplotype reconstruction using extended pedigree data.

BMC Genet 2005 Dec 30;6 Suppl 1:S76. Epub 2005 Dec 30.

Department of Statistics, The Ohio State University, 1958 Neil Avenue, Columbus, OH 43210, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866705PMC
December 2005