Shiguo Zhou

Shiguo Zhou

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Shiguo Zhou

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The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes.

Authors:
Yong Zhang He Yang David Turra Shiguo Zhou Dilay Hazal Ayhan Gregory A DeIulio Li Guo Karen Broz Nathan Wiederhold Jeffrey J Coleman Kerry O' Donnell Ilan Youngster Alexander J McAdam Sergey Savinov Terrance Shea Sarah Young Qiandong Zeng Martijn Rep Eric Pearlman David C Schwartz Antonio Di Pietro H Corby Kistler Li-Jun Ma

Commun Biol 2020 Jan 31;3(1):50. Epub 2020 Jan 31.

Department of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA.

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http://dx.doi.org/10.1038/s42003-020-0770-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6994591PMC
January 2020

Electrostatic confinement and manipulation of DNA molecules for genome analysis.

Authors:
Kristy L Kounovsky-Shafer Juan P Hernandez-Ortiz Konstantinos Potamousis Gene Tsvid Michael Place Prabu Ravindran Kyubong Jo Shiguo Zhou Theo Odijk Juan J de Pablo David C Schwartz

Proc Natl Acad Sci U S A 2017 12 4;114(51):13400-13405. Epub 2017 Dec 4.

Department of Chemistry, Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, Madison, WI 53706-1580;

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http://dx.doi.org/10.1073/pnas.1711069114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5754773PMC
December 2017

Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.

Authors:
Jean-Félix Dallery Nicolas Lapalu Antonios Zampounis Sandrine Pigné Isabelle Luyten Joëlle Amselem Alexander H J Wittenberg Shiguo Zhou Marisa V de Queiroz Guillaume P Robin Annie Auger Matthieu Hainaut Bernard Henrissat Ki-Tae Kim Yong-Hwan Lee Olivier Lespinet David C Schwartz Michael R Thon Richard J O'Connell

BMC Genomics 2017 Aug 29;18(1):667. Epub 2017 Aug 29.

UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, Thiverval-Grignon, France.

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http://dx.doi.org/10.1186/s12864-017-4083-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576322PMC
August 2017

A gapless genome sequence of the fungus Botrytis cinerea.

Authors:
Jan A L Van Kan Joost H M Stassen Andreas Mosbach Theo A J Van Der Lee Luigi Faino Andrew D Farmer Dimitrios G Papasotiriou Shiguo Zhou Michael F Seidl Eleanor Cottam Dominique Edel Matthias Hahn David C Schwartz Robert A Dietrich Stephanie Widdison Gabriel Scalliet

Mol Plant Pathol 2017 01 9;18(1):75-89. Epub 2016 Jun 9.

Syngenta Crop Protection Münchwilen AG, Crop Protection Research, CH-4332, Stein, Switzerland.

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http://dx.doi.org/10.1111/mpp.12384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638203PMC
January 2017

Who are the Best Candidates for Decompressive Surgery and Spine Stabilization in Patients With Metastatic Spinal Cord Compression?: A New Scoring System.

Authors:
Mingxing Lei Jianjie Li Yaosheng Liu Weigang Jiang Shubin Liu Shiguo Zhou

Spine (Phila Pa 1976) 2016 Sep;41(18):1469-76

*Department of Orthopedic Surgery, Affiliated Hospital of Academy of Military Medical Sciences, Beijing, China †Department of Pulmonary Neoplasms Internal Medicine, Affiliated Hospital of Academy of Military Medical Sciences, Beijing, China ‡Statistics Room, Capital Medical University Affiliated Beijing Friendship Hospital, Beijing, China.

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http://dx.doi.org/10.1097/BRS.0000000000001538DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001136PMC
September 2016

Genome Sequence and Annotation of Colletotrichum higginsianum, a Causal Agent of Crucifer Anthracnose Disease.

Authors:
Antonios Zampounis Sandrine Pigné Jean-Félix Dallery Alexander H J Wittenberg Shiguo Zhou David C Schwartz Michael R Thon Richard J O'Connell

Genome Announc 2016 Aug 18;4(4). Epub 2016 Aug 18.

UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, Thiverval-Grignon, France

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http://dx.doi.org/10.1128/genomeA.00821-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991707PMC
August 2016

Tantalum rod implantation for femoral head osteonecrosis: survivorship analysis and determination of prognostic factors for total hip arthroplasty.

Authors:
Yaosheng Liu Liang Yan Shiguo Zhou Xiuyun Su Yuncen Cao Cheng Wang Shubin Liu

Int Orthop 2016 Jul 11;40(7):1397-407. Epub 2015 Aug 11.

Department of Orthopaedic Surgery, PLA 307th Hospital, No.8, Fengtaidongda Road, Beijing, 100071, China.

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http://dx.doi.org/10.1007/s00264-015-2897-1DOI Listing
July 2016

Allele-Specific Quantification of Structural Variations in Cancer Genomes.

Authors:
Yang Li Shiguo Zhou David C Schwartz Jian Ma

Cell Syst 2016 07 21;3(1):21-34. Epub 2016 Jul 21.

Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2016.05.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965314PMC
July 2016

Combined effect of tnf-α polymorphisms and hypoxia on steroid-induced osteonecrosis of femoral head.

Authors:
Yaosheng Liu Weihao Jiang Shubin Liu Xiuyun Su Shiguo Zhou

Int J Clin Exp Pathol 2015 1;8(3):3215-9. Epub 2015 Mar 1.

Statistics Room, Capital Medical University Affiliated Beijing Friendship Hospital 95 Xuanwu District Yongan Road, Beijing, People's Republic of China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4440152PMC
April 2016

Prediction of survival prognosis after surgery in patients with symptomatic metastatic spinal cord compression from non-small cell lung cancer.

Authors:
Mingxing Lei Yaosheng Liu Chuanghao Tang Shaoxing Yang Shubin Liu Shiguo Zhou

BMC Cancer 2015 Nov 5;15:853. Epub 2015 Nov 5.

Statistics Room, Capital Medical University affiliated Beijing Friendship Hospital, No. 95, Xuanwu District Yongan Rd, Beijing, China.

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http://dx.doi.org/10.1186/s12885-015-1852-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4635615PMC
November 2015

Association between VEGF -634G/C polymorphism and osteonecrosis of the femoral head susceptibility: a meta analysis.

Authors:
Yaosheng Liu Zhicheng Zhang Shubin Liu Xiuyun Su Shiguo Zhou

Int J Clin Exp Med 2015 15;8(7):10979-85. Epub 2015 Jul 15.

Statistics Room, Capital Medical University Affiliated Beijing Friendship Hospital Beijing, People's Republic of China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4565276PMC
September 2015

A clone-free, single molecule map of the domestic cow (Bos taurus) genome.

Authors:
Shiguo Zhou Steve Goldstein Michael Place Michael Bechner Diego Patino Konstantinos Potamousis Prabu Ravindran Louise Pape Gonzalo Rincon Juan Hernandez-Ortiz Juan F Medrano David C Schwartz

BMC Genomics 2015 Aug 28;16:644. Epub 2015 Aug 28.

Laboratory for Molecular and Computational Genomics, Department of Chemistry, Laboratory of Genetics, and the UW Biotechnology Center, University of Wisconsin-Madison, 425 Henry Mall, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1186/s12864-015-1823-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551733PMC
August 2015

Chromosome-level genome map provides insights into diverse defense mechanisms in the medicinal fungus Ganoderma sinense.

Authors:
Yingjie Zhu Jiang Xu Chao Sun Shiguo Zhou Haibin Xu David R Nelson Jun Qian Jingyuan Song Hongmei Luo Li Xiang Ying Li Zhichao Xu Aijia Ji Lizhi Wang Shanfa Lu Alice Hayward Wei Sun Xiwen Li David C Schwartz Yitao Wang Shilin Chen

Sci Rep 2015 Jun 5;5:11087. Epub 2015 Jun 5.

1] Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, China [2] Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences &Peking Union Medical College, Beijing 100193, China.

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http://dx.doi.org/10.1038/srep11087DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4457147PMC
June 2015

Single-molecule analysis reveals widespread structural variation in multiple myeloma.

Authors:
Aditya Gupta Michael Place Steven Goldstein Deepayan Sarkar Shiguo Zhou Konstantinos Potamousis Jaehyup Kim Claire Flanagan Yang Li Michael A Newton Natalie S Callander Peiman Hematti Emery H Bresnick Jian Ma Fotis Asimakopoulos David C Schwartz

Proc Natl Acad Sci U S A 2015 Jun 8;112(25):7689-94. Epub 2015 Jun 8.

Biophysics Graduate Program, University of Wisconsin-Madison, Madison, WI 53706; Laboratory for Molecular and Computational Genomics, Department of Chemistry, Laboratory of Genetics and Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706; University of Wisconsin Carbone Cancer Center, Madison, WI 53705;

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http://dx.doi.org/10.1073/pnas.1418577112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4485118PMC
June 2015

A modified porous tantalum implant technique for osteonecrosis of the femoral head: survivorship analysis and prognostic factors for radiographic progression and conversion to total hip arthroplasty.

Authors:
Yaosheng Liu Xiuyun Su Shiguo Zhou Lei Wang Cheng Wang Shubin Liu

Int J Clin Exp Med 2015 15;8(2):1918-30. Epub 2015 Feb 15.

Department of Orthopaedics, The 307 Hospital, PLA Beijing 100071, People's Republic of China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402768PMC
May 2015

[A modified porous tantalum implant technology for osteonecrosis of the femoral head: survival and prognostic evaluations of conversion into total hip arthroplasty].

Authors:
Yaosheng Liu Shubin Liu Shiguo Zhou Xiuyun Su Cheng Wang Yuncen Cao Weihao Jiang Qiu Cui Lei Wang

Zhonghua Yi Xue Za Zhi 2014 Aug;94(31):2429-33

Email:

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August 2014

High-coverage sequencing and annotated assemblies of the budgerigar genome.

Authors:
Ganeshkumar Ganapathy Jason T Howard James M Ward Jianwen Li Bo Li Yingrui Li Yingqi Xiong Yong Zhang Shiguo Zhou David C Schwartz Michael Schatz Robert Aboukhalil Olivier Fedrigo Lisa Bukovnik Ty Wang Greg Wray Isabelle Rasolonjatovo Roger Winer James R Knight Sergey Koren Wesley C Warren Guojie Zhang Adam M Phillippy Erich D Jarvis

Gigascience 2014 8;3:11. Epub 2014 Jul 8.

Department of Neurobiology, Duke University Medical Center, Durham, NC 27710, USA.

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http://jarvislab.net/wp-content/uploads/2014/12/Ganapathy-et
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http://gigascience.biomedcentral.com/articles/10.1186/2047-2
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http://dx.doi.org/10.1186/2047-217X-3-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109783PMC
July 2014

An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

Authors:
Haibao Tang Vivek Krishnakumar Shelby Bidwell Benjamin Rosen Agnes Chan Shiguo Zhou Laurent Gentzbittel Kevin L Childs Mark Yandell Heidrun Gundlach Klaus F X Mayer David C Schwartz Christopher D Town

BMC Genomics 2014 Apr 27;15:312. Epub 2014 Apr 27.

J, Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD, USA.

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http://dx.doi.org/10.1186/1471-2164-15-312DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4234490PMC
April 2014

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Authors:
Keith R Bradnam Joseph N Fass Anton Alexandrov Paul Baranay Michael Bechner Inanç Birol Sébastien Boisvert Jarrod A Chapman Guillaume Chapuis Rayan Chikhi Hamidreza Chitsaz Wen-Chi Chou Jacques Corbeil Cristian Del Fabbro T Roderick Docking Richard Durbin Dent Earl Scott Emrich Pavel Fedotov Nuno A Fonseca Ganeshkumar Ganapathy Richard A Gibbs Sante Gnerre Elénie Godzaridis Steve Goldstein Matthias Haimel Giles Hall David Haussler Joseph B Hiatt Isaac Y Ho Jason Howard Martin Hunt Shaun D Jackman David B Jaffe Erich D Jarvis Huaiyang Jiang Sergey Kazakov Paul J Kersey Jacob O Kitzman James R Knight Sergey Koren Tak-Wah Lam Dominique Lavenier François Laviolette Yingrui Li Zhenyu Li Binghang Liu Yue Liu Ruibang Luo Iain Maccallum Matthew D Macmanes Nicolas Maillet Sergey Melnikov Delphine Naquin Zemin Ning Thomas D Otto Benedict Paten Octávio S Paulo Adam M Phillippy Francisco Pina-Martins Michael Place Dariusz Przybylski Xiang Qin Carson Qu Filipe J Ribeiro Stephen Richards Daniel S Rokhsar J Graham Ruby Simone Scalabrin Michael C Schatz David C Schwartz Alexey Sergushichev Ted Sharpe Timothy I Shaw Jay Shendure Yujian Shi Jared T Simpson Henry Song Fedor Tsarev Francesco Vezzi Riccardo Vicedomini Bruno M Vieira Jun Wang Kim C Worley Shuangye Yin Siu-Ming Yiu Jianying Yuan Guojie Zhang Hao Zhang Shiguo Zhou Ian F Korf

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis.

Authors:
Mohana Ray Steve Goldstein Shiguo Zhou Konstantinos Potamousis Deepayan Sarkar Michael A Newton Elizabeth Esterberg Christina Kendziorski Oliver Bogler David C Schwartz

BMC Genomics 2013 Jul 26;14:505. Epub 2013 Jul 26.

Department of Chemistry, UW Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1186/1471-2164-14-505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3727977PMC
July 2013

Comparative genomics of cryptosporidium.

Authors:
Aurélien J Mazurie João M Alves Luiz S Ozaki Shiguo Zhou David C Schwartz Gregory A Buck

Int J Genomics 2013 2;2013:832756. Epub 2013 May 2.

Department of Microbiology, Montana State University, Bozeman, MT 59717, USA ; Department of Microbiology and Immunology, Virginia Commonwealth University, Richmond, VA 23284-2030, USA.

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http://dx.doi.org/10.1155/2013/832756DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3659464PMC
June 2013

Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.

Authors:
Sebastiaan van Heesch Wigard P Kloosterman Nico Lansu Frans-Paul Ruzius Elizabeth Levandowsky Clarence C Lee Shiguo Zhou Steve Goldstein David C Schwartz Timothy T Harkins Victor Guryev Edwin Cuppen

BMC Genomics 2013 Apr 16;14:257. Epub 2013 Apr 16.

Hubrecht Institute/KNAW and University Medical Center Utrecht, Uppsalalaan 8, Utrecht 3584 CT, The Netherlands.

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http://dx.doi.org/10.1186/1471-2164-14-257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3648348PMC
April 2013

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.

Authors:
Yoshihiro Kawahara Melissa de la Bastide John P Hamilton Hiroyuki Kanamori W Richard McCombie Shu Ouyang David C Schwartz Tsuyoshi Tanaka Jianzhong Wu Shiguo Zhou Kevin L Childs Rebecca M Davidson Haining Lin Lina Quesada-Ocampo Brieanne Vaillancourt Hiroaki Sakai Sung Shin Lee Jungsok Kim Hisataka Numa Takeshi Itoh C Robin Buell Takashi Matsumoto

Rice (N Y) 2013 Feb 6;6(1). Epub 2013 Feb 6.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan.

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http://dx.doi.org/10.1186/1939-8433-6-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5395016PMC
February 2013

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.

Authors:
Viola A Manning Iovanna Pandelova Braham Dhillon Larry J Wilhelm Stephen B Goodwin Aaron M Berlin Melania Figueroa Michael Freitag James K Hane Bernard Henrissat Wade H Holman Chinnappa D Kodira Joel Martin Richard P Oliver Barbara Robbertse Wendy Schackwitz David C Schwartz Joseph W Spatafora B Gillian Turgeon Chandri Yandava Sarah Young Shiguo Zhou Qiandong Zeng Igor V Grigoriev Li-Jun Ma Lynda M Ciuffetti

G3 (Bethesda) 2013 Jan 1;3(1):41-63. Epub 2013 Jan 1.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331-8530, USA.

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http://dx.doi.org/10.1534/g3.112.004044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3538342PMC
January 2013

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.

Authors:
Richard J O'Connell Michael R Thon Stéphane Hacquard Stefan G Amyotte Jochen Kleemann Maria F Torres Ulrike Damm Ester A Buiate Lynn Epstein Noam Alkan Janine Altmüller Lucia Alvarado-Balderrama Christopher A Bauser Christian Becker Bruce W Birren Zehua Chen Jaeyoung Choi Jo Anne Crouch Jonathan P Duvick Mark A Farman Pamela Gan David Heiman Bernard Henrissat Richard J Howard Mehdi Kabbage Christian Koch Barbara Kracher Yasuyuki Kubo Audrey D Law Marc-Henri Lebrun Yong-Hwan Lee Itay Miyara Neil Moore Ulla Neumann Karl Nordström Daniel G Panaccione Ralph Panstruga Michael Place Robert H Proctor Dov Prusky Gabriel Rech Richard Reinhardt Jeffrey A Rollins Steve Rounsley Christopher L Schardl David C Schwartz Narmada Shenoy Ken Shirasu Usha R Sikhakolli Kurt Stüber Serenella A Sukno James A Sweigard Yoshitaka Takano Hiroyuki Takahara Frances Trail H Charlotte van der Does Lars M Voll Isa Will Sarah Young Qiandong Zeng Jingze Zhang Shiguo Zhou Martin B Dickman Paul Schulze-Lefert Emiel Ver Loren van Themaat Li-Jun Ma Lisa J Vaillancourt

Nat Genet 2012 Sep 12;44(9):1060-5. Epub 2012 Aug 12.

Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany.

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http://dx.doi.org/10.1038/ng.2372DOI Listing
September 2012

AGORA: Assembly Guided by Optical Restriction Alignment.

Authors:
Henry C Lin Steve Goldstein Lee Mendelowitz Shiguo Zhou Joshua Wetzel David C Schwartz Mihai Pop

BMC Bioinformatics 2012 Aug 2;13:189. Epub 2012 Aug 2.

Center for Bioinformatics and Computational Biology, University of Maryland-College Park, College Park, MD, USA.

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http://dx.doi.org/10.1186/1471-2105-13-189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431216PMC
August 2012

Genome sequence of the model medicinal mushroom Ganoderma lucidum.

Authors:
Shilin Chen Jiang Xu Chang Liu Yingjie Zhu David R Nelson Shiguo Zhou Chunfang Li Lizhi Wang Xu Guo Yongzhen Sun Hongmei Luo Ying Li Jingyuan Song Bernard Henrissat Anthony Levasseur Jun Qian Jianqin Li Xiang Luo Linchun Shi Liu He Li Xiang Xiaolan Xu Yunyun Niu Qiushi Li Mira V Han Haixia Yan Jin Zhang Haimei Chen Aiping Lv Zhen Wang Mingzhu Liu David C Schwartz Chao Sun

Nat Commun 2012 Jun 26;3:913. Epub 2012 Jun 26.

Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China.

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http://dx.doi.org/10.1038/ncomms1923DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621433PMC
June 2012

Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association.

Authors:
John P Bannantine Chia-wei Wu Chungyi Hsu Shiguo Zhou David C Schwartz Darrell O Bayles Michael L Paustian David P Alt Srinand Sreevatsan Vivek Kapur Adel M Talaat

BMC Genomics 2012 Mar 12;13:89. Epub 2012 Mar 12.

National Animal Disease Center, USDA-Agricultural Research Service, Ames, Iowa, USA.

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http://dx.doi.org/10.1186/1471-2164-13-89DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337245PMC
March 2012

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Authors:
Nevin D Young Frédéric Debellé Giles E D Oldroyd Rene Geurts Steven B Cannon Michael K Udvardi Vagner A Benedito Klaus F X Mayer Jérôme Gouzy Heiko Schoof Yves Van de Peer Sebastian Proost Douglas R Cook Blake C Meyers Manuel Spannagl Foo Cheung Stéphane De Mita Vivek Krishnakumar Heidrun Gundlach Shiguo Zhou Joann Mudge Arvind K Bharti Jeremy D Murray Marina A Naoumkina Benjamin Rosen Kevin A T Silverstein Haibao Tang Stephane Rombauts Patrick X Zhao Peng Zhou Valérie Barbe Philippe Bardou Michael Bechner Arnaud Bellec Anne Berger Hélène Bergès Shelby Bidwell Ton Bisseling Nathalie Choisne Arnaud Couloux Roxanne Denny Shweta Deshpande Xinbin Dai Jeff J Doyle Anne-Marie Dudez Andrew D Farmer Stéphanie Fouteau Carolien Franken Chrystel Gibelin John Gish Steven Goldstein Alvaro J González Pamela J Green Asis Hallab Marijke Hartog Axin Hua Sean J Humphray Dong-Hoon Jeong Yi Jing Anika Jöcker Steve M Kenton Dong-Jin Kim Kathrin Klee Hongshing Lai Chunting Lang Shaoping Lin Simone L Macmil Ghislaine Magdelenat Lucy Matthews Jamison McCorrison Erin L Monaghan Jeong-Hwan Mun Fares Z Najar Christine Nicholson Céline Noirot Majesta O'Bleness Charles R Paule Julie Poulain Florent Prion Baifang Qin Chunmei Qu Ernest F Retzel Claire Riddle Erika Sallet Sylvie Samain Nicolas Samson Iryna Sanders Olivier Saurat Claude Scarpelli Thomas Schiex Béatrice Segurens Andrew J Severin D Janine Sherrier Ruihua Shi Sarah Sims Susan R Singer Senjuti Sinharoy Lieven Sterck Agnès Viollet Bing-Bing Wang Keqin Wang Mingyi Wang Xiaohong Wang Jens Warfsmann Jean Weissenbach Doug D White Jim D White Graham B Wiley Patrick Wincker Yanbo Xing Limei Yang Ziyun Yao Fu Ying Jixian Zhai Liping Zhou Antoine Zuber Jean Dénarié Richard A Dixon Gregory D May David C Schwartz Jane Rogers Francis Quétier Christopher D Town Bruce A Roe

Nature 2011 Nov 16;480(7378):520-4. Epub 2011 Nov 16.

Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1038/nature10625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272368PMC
November 2011

High-resolution human genome structure by single-molecule analysis.

Authors:
Brian Teague Michael S Waterman Steven Goldstein Konstantinos Potamousis Shiguo Zhou Susan Reslewic Deepayan Sarkar Anton Valouev Christopher Churas Jeffrey M Kidd Scott Kohn Rodney Runnheim Casey Lamers Dan Forrest Michael A Newton Evan E Eichler Marijo Kent-First Urvashi Surti Miron Livny David C Schwartz

Proc Natl Acad Sci U S A 2010 Jun 1;107(24):10848-53. Epub 2010 Jun 1.

The Laboratory for Molecular and Computational Genomics, Department of Chemistry, Laboratory of Genetics and Biotechnology Center, University of Wisconsin, 425 Henry Mall, Madison, WI 53706-1580, USA.

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http://dx.doi.org/10.1073/pnas.0914638107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2890719PMC
June 2010

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.

Authors:
Li-Jun Ma H Charlotte van der Does Katherine A Borkovich Jeffrey J Coleman Marie-Josée Daboussi Antonio Di Pietro Marie Dufresne Michael Freitag Manfred Grabherr Bernard Henrissat Petra M Houterman Seogchan Kang Won-Bo Shim Charles Woloshuk Xiaohui Xie Jin-Rong Xu John Antoniw Scott E Baker Burton H Bluhm Andrew Breakspear Daren W Brown Robert A E Butchko Sinead Chapman Richard Coulson Pedro M Coutinho Etienne G J Danchin Andrew Diener Liane R Gale Donald M Gardiner Stephen Goff Kim E Hammond-Kosack Karen Hilburn Aurélie Hua-Van Wilfried Jonkers Kemal Kazan Chinnappa D Kodira Michael Koehrsen Lokesh Kumar Yong-Hwan Lee Liande Li John M Manners Diego Miranda-Saavedra Mala Mukherjee Gyungsoon Park Jongsun Park Sook-Young Park Robert H Proctor Aviv Regev M Carmen Ruiz-Roldan Divya Sain Sharadha Sakthikumar Sean Sykes David C Schwartz B Gillian Turgeon Ilan Wapinski Olen Yoder Sarah Young Qiandong Zeng Shiguo Zhou James Galagan Christina A Cuomo H Corby Kistler Martijn Rep

Nature 2010 Mar;464(7287):367-73

The Broad Institute, Cambridge, Massachusetts 02141, USA.

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http://dx.doi.org/10.1038/nature08850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048781PMC
March 2010

Detailed analysis of a contiguous 22-Mb region of the maize genome.

Authors:
Fusheng Wei Joshua C Stein Chengzhi Liang Jianwei Zhang Robert S Fulton Regina S Baucom Emanuele De Paoli Shiguo Zhou Lixing Yang Yujun Han Shiran Pasternak Apurva Narechania Lifang Zhang Cheng-Ting Yeh Kai Ying Dawn H Nagel Kristi Collura David Kudrna Jennifer Currie Jinke Lin Hyeran Kim Angelina Angelova Gabriel Scara Marina Wissotski Wolfgang Golser Laura Courtney Scott Kruchowski Tina A Graves Susan M Rock Stephanie Adams Lucinda A Fulton Catrina Fronick William Courtney Melissa Kramer Lori Spiegel Lydia Nascimento Ananth Kalyanaraman Cristian Chaparro Jean-Marc Deragon Phillip San Miguel Ning Jiang Susan R Wessler Pamela J Green Yeisoo Yu David C Schwartz Blake C Meyers Jeffrey L Bennetzen Robert A Martienssen W Richard McCombie Srinivas Aluru Sandra W Clifton Patrick S Schnable Doreen Ware Richard K Wilson Rod A Wing

PLoS Genet 2009 Nov 20;5(11):e1000728. Epub 2009 Nov 20.

Arizona Genomics Institute, School of Plant Sciences and Department of Ecology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, Arizona, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773423PMC
November 2009

The physical and genetic framework of the maize B73 genome.

Authors:
Fusheng Wei Jianwei Zhang Shiguo Zhou Ruifeng He Mary Schaeffer Kristi Collura David Kudrna Ben P Faga Marina Wissotski Wolfgang Golser Susan M Rock Tina A Graves Robert S Fulton Ed Coe Patrick S Schnable David C Schwartz Doreen Ware Sandra W Clifton Richard K Wilson Rod A Wing

PLoS Genet 2009 Nov 20;5(11):e1000715. Epub 2009 Nov 20.

Arizona Genomics Institute, Department of Plant Sciences, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, Arizona, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000715DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774505PMC
November 2009

A single molecule scaffold for the maize genome.

Authors:
Shiguo Zhou Fusheng Wei John Nguyen Mike Bechner Konstantinos Potamousis Steve Goldstein Louise Pape Michael R Mehan Chris Churas Shiran Pasternak Dan K Forrest Roger Wise Doreen Ware Rod A Wing Michael S Waterman Miron Livny David C Schwartz

PLoS Genet 2009 Nov 20;5(11):e1000711. Epub 2009 Nov 20.

Laboratory for Molecular and Computational Genomics, Department of Chemistry, Laboratory of Genetics, UW Biotechnology Center, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774507PMC
November 2009

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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November 2009

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

Authors:
Brian J Haas Sophien Kamoun Michael C Zody Rays H Y Jiang Robert E Handsaker Liliana M Cano Manfred Grabherr Chinnappa D Kodira Sylvain Raffaele Trudy Torto-Alalibo Tolga O Bozkurt Audrey M V Ah-Fong Lucia Alvarado Vicky L Anderson Miles R Armstrong Anna Avrova Laura Baxter Jim Beynon Petra C Boevink Stephanie R Bollmann Jorunn I B Bos Vincent Bulone Guohong Cai Cahid Cakir James C Carrington Megan Chawner Lucio Conti Stefano Costanzo Richard Ewan Noah Fahlgren Michael A Fischbach Johanna Fugelstad Eleanor M Gilroy Sante Gnerre Pamela J Green Laura J Grenville-Briggs John Griffith Niklaus J Grünwald Karolyn Horn Neil R Horner Chia-Hui Hu Edgar Huitema Dong-Hoon Jeong Alexandra M E Jones Jonathan D G Jones Richard W Jones Elinor K Karlsson Sridhara G Kunjeti Kurt Lamour Zhenyu Liu Lijun Ma Daniel Maclean Marcus C Chibucos Hayes McDonald Jessica McWalters Harold J G Meijer William Morgan Paul F Morris Carol A Munro Keith O'Neill Manuel Ospina-Giraldo Andrés Pinzón Leighton Pritchard Bernard Ramsahoye Qinghu Ren Silvia Restrepo Sourav Roy Ari Sadanandom Alon Savidor Sebastian Schornack David C Schwartz Ulrike D Schumann Ben Schwessinger Lauren Seyer Ted Sharpe Cristina Silvar Jing Song David J Studholme Sean Sykes Marco Thines Peter J I van de Vondervoort Vipaporn Phuntumart Stephan Wawra Rob Weide Joe Win Carolyn Young Shiguo Zhou William Fry Blake C Meyers Pieter van West Jean Ristaino Francine Govers Paul R J Birch Stephen C Whisson Howard S Judelson Chad Nusbaum

Nature 2009 Sep 9;461(7262):393-8. Epub 2009 Sep 9.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02141, USA.

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September 2009

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.

Authors:
Jeffrey J Coleman Steve D Rounsley Marianela Rodriguez-Carres Alan Kuo Catherine C Wasmann Jane Grimwood Jeremy Schmutz Masatoki Taga Gerard J White Shiguo Zhou David C Schwartz Michael Freitag Li-Jun Ma Etienne G J Danchin Bernard Henrissat Pedro M Coutinho David R Nelson Dave Straney Carolyn A Napoli Bridget M Barker Michael Gribskov Martijn Rep Scott Kroken István Molnár Christopher Rensing John C Kennell Jorge Zamora Mark L Farman Eric U Selker Asaf Salamov Harris Shapiro Jasmyn Pangilinan Erika Lindquist Casey Lamers Igor V Grigoriev David M Geiser Sarah F Covert Esteban Temporini Hans D Vanetten

PLoS Genet 2009 Aug 28;5(8):e1000618. Epub 2009 Aug 28.

Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000618DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2725324PMC
August 2009

Lineage-specific biology revealed by a finished genome assembly of the mouse.

Authors:
Deanna M Church Leo Goodstadt Ladeana W Hillier Michael C Zody Steve Goldstein Xinwe She Carol J Bult Richa Agarwala Joshua L Cherry Michael DiCuccio Wratko Hlavina Yuri Kapustin Peter Meric Donna Maglott Zoë Birtle Ana C Marques Tina Graves Shiguo Zhou Brian Teague Konstantinos Potamousis Christopher Churas Michael Place Jill Herschleb Ron Runnheim Daniel Forrest James Amos-Landgraf David C Schwartz Ze Cheng Kerstin Lindblad-Toh Evan E Eichler Chris P Ponting

PLoS Biol 2009 May 26;7(5):e1000112. Epub 2009 May 26.

National Center for Biotechnology Information, Bethesda, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1000112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680341PMC
May 2009

Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome.

Authors:
Chia-wei Wu Timothy M Schramm Shiguo Zhou David C Schwartz Adel M Talaat

BMC Genomics 2009 Jan 15;10:25. Epub 2009 Jan 15.

The Laboratory of Bacterial Genomics, Department of Pathobiological Sciences, University of Wisconsin-Madison, WI, USA.

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http://dx.doi.org/10.1186/1471-2164-10-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633350PMC
January 2009

Optical mapping discerns genome wide DNA methylation profiles.

Authors:
Gene E Ananiev Steve Goldstein Rod Runnheim Dan K Forrest Shiguo Zhou Konstantinos Potamousis Chris P Churas Veit Bergendahl James A Thomson David C Schwartz

BMC Mol Biol 2008 Jul 30;9:68. Epub 2008 Jul 30.

Department of Chemistry, Laboratory for Molecular and Computational Genomics, University of Wisconsin Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1186/1471-2199-9-68DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516518PMC
July 2008

Validation of rice genome sequence by optical mapping.

Authors:
Shiguo Zhou Michael C Bechner Michael Place Chris P Churas Louise Pape Sally A Leong Rod Runnheim Dan K Forrest Steve Goldstein Miron Livny David C Schwartz

BMC Genomics 2007 Aug 15;8:278. Epub 2007 Aug 15.

Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, UW Biotechnology Centre, 425 Henry Mall, Madison, Wisconsin 53706, USA.

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http://dx.doi.org/10.1186/1471-2164-8-278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2048515PMC
August 2007

An algorithm for assembly of ordered restriction maps from single DNA molecules.

Authors:
Anton Valouev David C Schwartz Shiguo Zhou Michael S Waterman

Proc Natl Acad Sci U S A 2006 Oct 16;103(43):15770-5. Epub 2006 Oct 16.

Department of Mathematics, University of Southern California, 3620 South Vermont Avenue, KAP 108, Los Angeles, CA 90089-2532, USA.

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http://dx.doi.org/10.1073/pnas.0604040103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635078PMC
October 2006

Whole-genome shotgun optical mapping of Rhodospirillum rubrum.

Authors:
Susan Reslewic Shiguo Zhou Mike Place Yaoping Zhang Adam Briska Steve Goldstein Chris Churas Rod Runnheim Dan Forrest Alex Lim Alla Lapidus Cliff S Han Gary P Roberts David C Schwartz

Appl Environ Microbiol 2005 Sep;71(9):5511-22

Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, UW-Biotechnology Center, 425 Henry Mall, Madison, WI 53706, USA.

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http://dx.doi.org/10.1128/AEM.71.9.5511-5522.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1214604PMC
September 2005

The genome of the kinetoplastid parasite, Leishmania major.

Authors:
Alasdair C Ivens Christopher S Peacock Elizabeth A Worthey Lee Murphy Gautam Aggarwal Matthew Berriman Ellen Sisk Marie-Adele Rajandream Ellen Adlem Rita Aert Atashi Anupama Zina Apostolou Philip Attipoe Nathalie Bason Christopher Bauser Alfred Beck Stephen M Beverley Gabriella Bianchettin Katja Borzym Gordana Bothe Carlo V Bruschi Matt Collins Eithon Cadag Laura Ciarloni Christine Clayton Richard M R Coulson Ann Cronin Angela K Cruz Robert M Davies Javier De Gaudenzi Deborah E Dobson Andreas Duesterhoeft Gholam Fazelina Nigel Fosker Alberto Carlos Frasch Audrey Fraser Monika Fuchs Claudia Gabel Arlette Goble André Goffeau David Harris Christiane Hertz-Fowler Helmut Hilbert David Horn Yiting Huang Sven Klages Andrew Knights Michael Kube Natasha Larke Lyudmila Litvin Angela Lord Tin Louie Marco Marra David Masuy Keith Matthews Shulamit Michaeli Jeremy C Mottram Silke Müller-Auer Heather Munden Siri Nelson Halina Norbertczak Karen Oliver Susan O'neil Martin Pentony Thomas M Pohl Claire Price Bénédicte Purnelle Michael A Quail Ester Rabbinowitsch Richard Reinhardt Michael Rieger Joel Rinta Johan Robben Laura Robertson Jeronimo C Ruiz Simon Rutter David Saunders Melanie Schäfer Jacquie Schein David C Schwartz Kathy Seeger Amber Seyler Sarah Sharp Heesun Shin Dhileep Sivam Rob Squares Steve Squares Valentina Tosato Christy Vogt Guido Volckaert Rolf Wambutt Tim Warren Holger Wedler John Woodward Shiguo Zhou Wolfgang Zimmermann Deborah F Smith Jenefer M Blackwell Kenneth D Stuart Bart Barrell Peter J Myler

Science 2005 Jul;309(5733):436-42

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.

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http://dx.doi.org/10.1126/science.1112680DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1470643PMC
July 2005

Shotgun optical mapping of the entire Leishmania major Friedlin genome.

Authors:
Shiguo Zhou Andrew Kile Erika Kvikstad Mike Bechner Jessica Severin Dan Forrest Rod Runnheim Chris Churas Thomas S Anantharaman Peter Myler Christy Vogt Al Ivens Kenneth Stuart David C Schwartz

Mol Biochem Parasitol 2004 Nov;138(1):97-106

Laboratory for Molecular and Computational Genomics, UW Biotechnology Center, University of Wisconsin-Madison, 425 Henry Mall, Madison, WI 53706, USA.

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http://dx.doi.org/10.1016/j.molbiopara.2004.08.002DOI Listing
November 2004

Single-molecule approach to bacterial genomic comparisons via optical mapping.

Authors:
Shiguo Zhou Andrew Kile Michael Bechner Michael Place Erika Kvikstad Wen Deng Jun Wei Jessica Severin Rodney Runnheim Christopher Churas Daniel Forrest Eileen T Dimalanta Casey Lamers Valerie Burland Frederick R Blattner David C Schwartz

J Bacteriol 2004 Nov;186(22):7773-82

Laboratory for Molecular and Computation Genomics, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1128/JB.186.22.7773-7782.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524920PMC
November 2004

The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism.

Authors:
E Virginia Armbrust John A Berges Chris Bowler Beverley R Green Diego Martinez Nicholas H Putnam Shiguo Zhou Andrew E Allen Kirk E Apt Michael Bechner Mark A Brzezinski Balbir K Chaal Anthony Chiovitti Aubrey K Davis Mark S Demarest J Chris Detter Tijana Glavina David Goodstein Masood Z Hadi Uffe Hellsten Mark Hildebrand Bethany D Jenkins Jerzy Jurka Vladimir V Kapitonov Nils Kröger Winnie W Y Lau Todd W Lane Frank W Larimer J Casey Lippmeier Susan Lucas Mónica Medina Anton Montsant Miroslav Obornik Micaela Schnitzler Parker Brian Palenik Gregory J Pazour Paul M Richardson Tatiana A Rynearson Mak A Saito David C Schwartz Kimberlee Thamatrakoln Klaus Valentin Assaf Vardi Frances P Wilkerson Daniel S Rokhsar

Science 2004 Oct;306(5693):79-86

School of Oceanography, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1126/science.1101156DOI Listing
October 2004

Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly.

Authors:
Shiguo Zhou Erika Kvikstad Andrew Kile Jessica Severin Dan Forrest Rod Runnheim Chris Churas Jason W Hickman Chris Mackenzie Madhusudan Choudhary Timothy Donohue Samuel Kaplan David C Schwartz

Genome Res 2003 Sep;13(9):2142-51

Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, UW Biotechnology Center, Madison, Wisconsin 53706, USA.

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http://dx.doi.org/10.1101/gr.1128803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403714PMC
September 2003

The sequence and analysis of Trypanosoma brucei chromosome II.

Authors:
Najib M A El-Sayed Elodie Ghedin Jinming Song Annette MacLeod Frederic Bringaud Christopher Larkin David Wanless Jeremy Peterson Lihua Hou Sonya Taylor Alison Tweedie Nicolas Biteau Hanif G Khalak Xiaoying Lin Tanya Mason Linda Hannick Elisabet Caler Gaëlle Blandin Daniella Bartholomeu Anjana J Simpson Samir Kaul Hong Zhao Grace Pai Susan Van Aken Teresa Utterback Brian Haas Hean L Koo Lowell Umayam Bernard Suh Caroline Gerrard Vanessa Leech Rong Qi Shiguo Zhou David Schwartz Tamara Feldblyum Steven Salzberg Andrew Tait C Michael R Turner Elisabetta Ullu Owen White Sara Melville Mark D Adams Claire M Fraser John E Donelson

Nucleic Acids Res 2003 Aug;31(16):4856-63

The Institute for Genomic Research, Rockville, MD 20850, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC169936PMC
http://dx.doi.org/10.1093/nar/gkg673DOI Listing
August 2003

A whole-genome shotgun optical map of Yersinia pestis strain KIM.

Authors:
Shiguo Zhou Wen Deng Thomas S Anantharaman Alex Lim Eileen T Dimalanta Jun Wang Tian Wu Tao Chunhong Robert Creighton Andrew Kile Erika Kvikstad Michael Bechner Galex Yen Ana Garic-Stankovic Jessica Severin Dan Forrest Rod Runnheim Chris Churas Casey Lamers Nicole T Perna Valerie Burland Frederick R Blattner Bhubaneswar Mishra David C Schwartz

Appl Environ Microbiol 2002 Dec;68(12):6321-31

Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, 53706, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC134435PMC
http://dx.doi.org/10.1128/aem.68.12.6321-6331.2002DOI Listing
December 2002

Genome sequence of Yersinia pestis KIM.

Authors:
Wen Deng Valerie Burland Guy Plunkett Adam Boutin George F Mayhew Paul Liss Nicole T Perna Debra J Rose Bob Mau Shiguo Zhou David C Schwartz Jaqueline D Fetherston Luther E Lindler Robert R Brubaker Gregory V Plano Susan C Straley Kathleen A McDonough Matthew L Nilles Jyl S Matson Frederick R Blattner Robert D Perry

J Bacteriol 2002 Aug;184(16):4601-11

Laboratory of Genetics, University of Wisconsin, Madison, Wisconsin 53706, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC135232PMC
http://dx.doi.org/10.1128/jb.184.16.4601-4611.2002DOI Listing
August 2002