Sherry L Jenkins

Sherry L Jenkins

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Sherry L Jenkins

Sherry L Jenkins

Publications by authors named "Sherry L Jenkins"

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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Authors:
Alexandra B Keenan Sherry L Jenkins Kathleen M Jagodnik Simon Koplev Edward He Denis Torre Zichen Wang Anders B Dohlman Moshe C Silverstein Alexander Lachmann Maxim V Kuleshov Avi Ma'ayan Vasileios Stathias Raymond Terryn Daniel Cooper Michele Forlin Amar Koleti Dusica Vidovic Caty Chung Stephan C Schürer Jouzas Vasiliauskas Marcin Pilarczyk Behrouz Shamsaei Mehdi Fazel Yan Ren Wen Niu Nicholas A Clark Shana White Naim Mahi Lixia Zhang Michal Kouril John F Reichard Siva Sivaganesan Mario Medvedovic Jaroslaw Meller Rick J Koch Marc R Birtwistle Ravi Iyengar Eric A Sobie Evren U Azeloglu Julia Kaye Jeannette Osterloh Kelly Haston Jaslin Kalra Steve Finkbiener Jonathan Li Pamela Milani Miriam Adam Renan Escalante-Chong Karen Sachs Alex Lenail Divya Ramamoorthy Ernest Fraenkel Gavin Daigle Uzma Hussain Alyssa Coye Jeffrey Rothstein Dhruv Sareen Loren Ornelas Maria Banuelos Berhan Mandefro Ritchie Ho Clive N Svendsen Ryan G Lim Jennifer Stocksdale Malcolm S Casale Terri G Thompson Jie Wu Leslie M Thompson Victoria Dardov Vidya Venkatraman Andrea Matlock Jennifer E Van Eyk Jacob D Jaffe Malvina Papanastasiou Aravind Subramanian Todd R Golub Sean D Erickson Mohammad Fallahi-Sichani Marc Hafner Nathanael S Gray Jia-Ren Lin Caitlin E Mills Jeremy L Muhlich Mario Niepel Caroline E Shamu Elizabeth H Williams David Wrobel Peter K Sorger Laura M Heiser Joe W Gray James E Korkola Gordon B Mills Mark LaBarge Heidi S Feiler Mark A Dane Elmar Bucher Michel Nederlof Damir Sudar Sean Gross David F Kilburn Rebecca Smith Kaylyn Devlin Ron Margolis Leslie Derr Albert Lee Ajay Pillai

Cell Syst 2018 01 29;6(1):13-24. Epub 2017 Nov 29.

NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.cels.2017.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799026PMC
January 2018

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.

J Biomed Inform 2017 07 10;71:49-57. Epub 2017 May 10.

Department of Pharmacological Sciences, BD2K-LINCS Data Coordination and Integration Center, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1215, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2017.05.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5545976PMC
July 2017

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.

Nucleic Acids Res 2016 07 3;44(W1):W90-7. Epub 2016 May 3.

Department of Pharmacology and Systems Therapeutics, BD2K-LINCS Data Coordination and Integration Center, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place Box 1215, New York, NY 10029, USA

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http://dx.doi.org/10.1093/nar/gkw377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987924PMC
July 2016

Genes2WordCloud: a quick way to identify biological themes from gene lists and free text.

Source Code Biol Med 2011 Oct 13;6:15. Epub 2011 Oct 13.

Department of Pharmacology and Systems Therapeutics, Systems Biology Center New York (SBCNY), Mount Sinai School of Medicine, 1425 Madison Avenue, New York, NY, 10029, USA.

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http://dx.doi.org/10.1186/1751-0473-6-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3213042PMC
October 2011

Systems biology--biomedical modeling.

Sci Signal 2011 Sep 6;4(190):tr2. Epub 2011 Sep 6.

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1126/scisignal.2001989DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188945PMC
September 2011

Systems approach to explore components and interactions in the presynapse.

Proteomics 2009 Jun;9(12):3303-15

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1002/pmic.200800767DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2766278PMC
June 2009

SNAVI: Desktop application for analysis and visualization of large-scale signaling networks.

BMC Syst Biol 2009 Jan 20;3:10. Epub 2009 Jan 20.

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1186/1752-0509-3-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637233PMC
January 2009

Neuro2A differentiation by Galphai/o pathway.

Sci Signal 2009 Jan 20;2(54):cm1. Epub 2009 Jan 20.

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1126/scisignal.254cm1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2649824PMC
January 2009

Teaching resources. Using web-based discussion forums as a model of the peer-review process and a tool for assessment.

Sci Signal 2008 ;1(9):tr2

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1126/stke.19tr2DOI Listing
April 2008

Inquiry learning. Integrating content detail and critical reasoning by peer review.

Science 2008 Feb;319(5867):1189-90

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1126/science.1149875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3038128PMC
February 2008

Network analysis of FDA approved drugs and their targets.

Mt Sinai J Med 2007 Apr;74(1):27-32

Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, New York 10029, USA.

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http://dx.doi.org/10.1002/msj.20002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561141PMC
April 2007