Publications by authors named "Sheldon McKay"

26Publications

The Reactome pathway Knowledgebase.

Authors:
Antonio Fabregat Konstantinos Sidiropoulos Phani Garapati Marc Gillespie Kerstin Hausmann Robin Haw Bijay Jassal Steven Jupe Florian Korninger Sheldon McKay Lisa Matthews Bruce May Marija Milacic Karen Rothfels Veronica Shamovsky Marissa Webber Joel Weiser Mark Williams Guanming Wu Lincoln Stein Henning Hermjakob Peter D'Eustachio

Nucleic Acids Res 2016 Jan 9;44(D1):D481-7. Epub 2015 Dec 9.

NYU School of Medicine, New York, NY 10016, USA

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January 2016

Gramene 2016: comparative plant genomics and pathway resources.

Authors:
Marcela K Tello-Ruiz Joshua Stein Sharon Wei Justin Preece Andrew Olson Sushma Naithani Vindhya Amarasinghe Palitha Dharmawardhana Yinping Jiao Joseph Mulvaney Sunita Kumari Kapeel Chougule Justin Elser Bo Wang James Thomason Daniel M Bolser Arnaud Kerhornou Brandon Walts Nuno A Fonseca Laura Huerta Maria Keays Y Amy Tang Helen Parkinson Antonio Fabregat Sheldon McKay Joel Weiser Peter D'Eustachio Lincoln Stein Robert Petryszak Paul J Kersey Pankaj Jaiswal Doreen Ware

Nucleic Acids Res 2016 Jan 8;44(D1):D1133-40. Epub 2015 Nov 8.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853, USA

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January 2016

Installing a Local Copy of the Reactome Web Site and Knowledgebase.

Authors:
Sheldon J McKay Joel Weiser

Curr Protoc Bioinformatics 2015 Jun 19;50:9.10.1-9.10.10. Epub 2015 Jun 19.

Ontario Institute for Cancer Research, Toronto, Ontario, Canada.

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June 2015

Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene function.

Authors:
Adrian J Verster Arun K Ramani Sheldon J McKay Andrew G Fraser

PLoS Genet 2014 Feb 6;10(2):e1004077. Epub 2014 Feb 6.

The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada ; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.

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February 2014

Transcriptome responses in the rectal gland of fed and fasted spiny dogfish shark (Squalus acanthias) determined by suppression subtractive hybridization.

Authors:
Courtney A Deck Sheldon J McKay Tristan J Fiedler Christophe M R LeMoine Makiko Kajimura C Michele Nawata Chris M Wood Patrick J Walsh

Comp Biochem Physiol Part D Genomics Proteomics 2013 Dec 6;8(4):334-43. Epub 2013 Oct 6.

Department of Biology, University of Ottawa, Ottawa, ON K1N 6N5, Canada; Centre for Advanced Research in Environmental Genomics, University of Ottawa, Ottawa, ON K1N 6N5, Canada.

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December 2013

Phylogenetic analysis with the iPlant discovery environment.

Authors:
Naim Matasci Sheldon McKay

Curr Protoc Bioinformatics 2013 Jun;Chapter 6:Unit6.13

The iPlant Collaborative.

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June 2013

Using the iPlant collaborative discovery environment.

Authors:
Shannon L Oliver Andrew J Lenards Roger A Barthelson Nirav Merchant Sheldon J McKay

Curr Protoc Bioinformatics 2013 Jun;Chapter 1:Unit1.22

The iPlant Collaborative.

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June 2013

The taxonomic name resolution service: an online tool for automated standardization of plant names.

Authors:
Brad Boyle Nicole Hopkins Zhenyuan Lu Juan Antonio Raygoza Garay Dmitry Mozzherin Tony Rees Naim Matasci Martha L Narro William H Piel Sheldon J McKay Sonya Lowry Chris Freeland Robert K Peet Brian J Enquist

BMC Bioinformatics 2013 Jan 16;14:16. Epub 2013 Jan 16.

Department of Ecology and Evolutionary Biology, University of Arizona Tucson, P,O, Box 210088, Tucson, AZ 85721, USA.

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January 2013

Cloud Computing with iPlant Atmosphere.

Authors:
Sheldon J McKay Edwin J Skidmore Christopher J LaRose Andre W Mercer Christos Noutsos

Curr Protoc Bioinformatics 2013 Oct 15;43:9.15.1-9.15.20. Epub 2013 Oct 15.

The iPlant Collaborative.

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October 2013

The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.

Authors:
Nicole L Washington E O Stinson Marc D Perry Peter Ruzanov Sergio Contrino Richard Smith Zheng Zha Rachel Lyne Adrian Carr Paul Lloyd Ellen Kephart Sheldon J McKay Gos Micklem Lincoln D Stein Suzanna E Lewis

Database (Oxford) 2011 19;2011:bar023. Epub 2011 Aug 19.

Lawrence Berkeley National Laboratory, Genomics Division, 1 Cyclotron Road MS64-121, Berkeley, CA 94720, USA.

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November 2011

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Authors:
Stephen A Goff Matthew Vaughn Sheldon McKay Eric Lyons Ann E Stapleton Damian Gessler Naim Matasci Liya Wang Matthew Hanlon Andrew Lenards Andy Muir Nirav Merchant Sonya Lowry Stephen Mock Matthew Helmke Adam Kubach Martha Narro Nicole Hopkins David Micklos Uwe Hilgert Michael Gonzales Chris Jordan Edwin Skidmore Rion Dooley John Cazes Robert McLay Zhenyuan Lu Shiran Pasternak Lars Koesterke William H Piel Ruth Grene Christos Noutsos Karla Gendler Xin Feng Chunlao Tang Monica Lent Seung-Jin Kim Kristian Kvilekval B S Manjunath Val Tannen Alexandros Stamatakis Michael Sanderson Stephen M Welch Karen A Cranston Pamela Soltis Doug Soltis Brian O'Meara Cecile Ane Tom Brutnell Daniel J Kleibenstein Jeffery W White James Leebens-Mack Michael J Donoghue Edgar P Spalding Todd J Vision Christopher R Myers David Lowenthal Brian J Enquist Brad Boyle Ali Akoglu Greg Andrews Sudha Ram Doreen Ware Lincoln Stein Dan Stanzione

Front Plant Sci 2011 25;2:34. Epub 2011 Jul 25.

BIO5 Institute, University of Arizona Tucson, AZ, USA.

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August 2012

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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December 2010

Using the Generic Synteny Browser (GBrowse_syn).

Authors:
Sheldon J McKay Ismael A Vergara Jason E Stajich

Curr Protoc Bioinformatics 2010 Sep;Chapter 9:Unit 9.12

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.

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September 2010

An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches.

Authors:
Stephen J Robinson Lily H Tang Brent Ag Mooney Sheldon J McKay Wayne E Clarke Matthew G Links Steven Karcz Sharon Regan Yun-Yun Wu Margaret Y Gruber Dejun Cui Min Yu Isobel A P Parkin

BMC Plant Biol 2009 Jul 31;9:101. Epub 2009 Jul 31.

Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon S7N0X2, Canada.

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July 2009

An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans.

Authors:
Barbara Meissner Adam Warner Kim Wong Nicholas Dube Adam Lorch Sheldon J McKay Jaswinder Khattra Teresa Rogalski Aruna Somasiri Iasha Chaudhry Rebecca M Fox David M Miller David L Baillie Robert A Holt Steven J M Jones Marco A Marra Donald G Moerman

PLoS Genet 2009 Jun 26;5(6):e1000537. Epub 2009 Jun 26.

Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada.

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June 2009

nGASP--the nematode genome annotation assessment project.

Authors:
Avril Coghlan Tristan J Fiedler Sheldon J McKay Paul Flicek Todd W Harris Darin Blasiar Lincoln D Stein

BMC Bioinformatics 2008 Dec 19;9:549. Epub 2008 Dec 19.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.

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December 2008

WormBase 2007.

Authors:
Anthony Rogers Igor Antoshechkin Tamberlyn Bieri Darin Blasiar Carol Bastiani Payan Canaran Juancarlos Chan Wen J Chen Paul Davis Jolene Fernandes Tristan J Fiedler Michael Han Todd W Harris Ranjana Kishore Raymond Lee Sheldon McKay Hans-Michael Müller Cecilia Nakamura Philip Ozersky Andrei Petcherski Gary Schindelman Erich M Schwarz Will Spooner Mary Ann Tuli Kimberly Van Auken Daniel Wang Xiaodong Wang Gary Williams Karen Yook Richard Durbin Lincoln D Stein John Spieth Paul W Sternberg

Nucleic Acids Res 2008 Jan 8;36(Database issue):D612-7. Epub 2007 Nov 8.

Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridgeshire CB10 1SA, UK.

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January 2008

High-throughput in vivo analysis of gene expression in Caenorhabditis elegans.

Authors:
Rebecca Hunt-Newbury Ryan Viveiros Robert Johnsen Allan Mah Dina Anastas Lily Fang Erin Halfnight David Lee John Lin Adam Lorch Sheldon McKay H Mark Okada Jie Pan Ana K Schulz Domena Tu Kim Wong Z Zhao Andrey Alexeyenko Thomas Burglin Eric Sonnhammer Ralf Schnabel Steven J Jones Marco A Marra David L Baillie Donald G Moerman

PLoS Biol 2007 Sep;5(9):e237

Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada.

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September 2007

Genes that may modulate longevity in C. elegans in both dauer larvae and long-lived daf-2 adults.

Authors:
Peter Ruzanov Donald L Riddle Marco A Marra Sheldon J McKay Steven M Jones

Exp Gerontol 2007 Aug 21;42(8):825-39. Epub 2007 Apr 21.

Genome Sciences Centre, BC Cancer Research Centre, 570 West 7th Avenue, Vancouver, BC, Canada.

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August 2007

The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine.

Authors:
James D McGhee Monica C Sleumer Mikhail Bilenky Kim Wong Sheldon J McKay Barbara Goszczynski Helen Tian Natisha D Krich Jaswinder Khattra Robert A Holt David L Baillie Yuji Kohara Marco A Marra Steven J M Jones Donald G Moerman A Gordon Robertson

Dev Biol 2007 Feb 21;302(2):627-45. Epub 2006 Oct 21.

Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive N.W., Calgary, Alberta, Canada T2N 4N1.

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February 2007