Shawn N Murphy

Shawn N Murphy

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Semi-supervised encoding for outlier detection in clinical observation data.

Comput Methods Programs Biomed 2019 Nov 12;181:104830. Epub 2019 Jan 12.

Harvard Medical School, Boston, MA, USA; Massachusetts General Hospital, Boston, MA, USA; Partners Healthcare, Somerville, MA, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01692607183075
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http://dx.doi.org/10.1016/j.cmpb.2019.01.002DOI Listing
November 2019

Automated Population of an i2b2 Clinical Data Warehouse using FHIR.

AMIA Annu Symp Proc 2018 5;2018:979-988. Epub 2018 Dec 5.

Department of Health Sciences Research, Mayo Clinic, Rochester MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371332PMC
November 2019

Correction to: Association between inflammation and systolic blood pressure in RA compared to patients without RA.

Arthritis Res Ther 2019 Jul 8;21(1):170. Epub 2019 Jul 8.

Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1186/s13075-019-1940-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615297PMC
July 2019

A clustering approach for detecting implausible observation values in electronic health records data.

BMC Med Inform Decis Mak 2019 07 23;19(1):142. Epub 2019 Jul 23.

Laboratory of Computer Science, Massachusetts General Hospital, 50 Staniford Street, Suite 750, Boston, MA, 02114, USA.

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http://dx.doi.org/10.1186/s12911-019-0852-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6652024PMC
July 2019

Data model harmonization for the All Of Us Research Program: Transforming i2b2 data into the OMOP common data model.

PLoS One 2019 19;14(2):e0212463. Epub 2019 Feb 19.

Research Information Science and Computing, Partners Healthcare, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0212463PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380544PMC
February 2019

Field of View Normalization in Multi-Site Brain MRI.

Neuroinformatics 2018 10;16(3-4):431-444

Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1007/s12021-018-9359-zDOI Listing
October 2018

Web services for data warehouses: OMOP and PCORnet on i2b2.

J Am Med Inform Assoc 2018 10;25(10):1331-1338

Research Information Science and Computing, Partners Healthcare, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1093/jamia/ocy093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6188504PMC
October 2018

The Association Between Arthralgia and Vedolizumab Using Natural Language Processing.

Inflamm Bowel Dis 2018 09;24(10):2242-2246

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1093/ibd/izy127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140445PMC
September 2018

Association between inflammation and systolic blood pressure in RA compared to patients without RA.

Arthritis Res Ther 2018 06 1;20(1):107. Epub 2018 Jun 1.

Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1186/s13075-018-1597-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984318PMC
June 2018

Identifying Patients With High Data Completeness to Improve Validity of Comparative Effectiveness Research in Electronic Health Records Data.

Clin Pharmacol Ther 2018 05 10;103(5):899-905. Epub 2017 Oct 10.

Division of Pharmacoepidemiology and Pharmacoeconomics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1002/cpt.861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6026022PMC
May 2018

The Ad-Hoc Uncertainty Principle of Patient Privacy.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:132-138. Epub 2018 May 18.

Harvard Medical School.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961824PMC
May 2018

Feasibility of Homomorphic Encryption for Sharing I2B2 Aggregate-Level Data in the Cloud.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:176-185. Epub 2018 May 18.

Partners Healthcare, Boston, MA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961814PMC
May 2018

Supporting Multi-sourced Medication Information in i2b2.

AMIA Annu Symp Proc 2015 5;2015:747-55. Epub 2015 Nov 5.

Harvard Medical School, Boston, MA;; Boston Children's Hospital, Boston MA;

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765563PMC
January 2018

Enabling phenotypic big data with PheNorm.

J Am Med Inform Assoc 2018 01;25(1):54-60

Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.

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http://dx.doi.org/10.1093/jamia/ocx111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251688PMC
January 2018

Combining clinical and genomics queries using i2b2 - Three methods.

PLoS One 2017 7;12(4):e0172187. Epub 2017 Apr 7.

Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0172187PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5384666PMC
September 2017

A Computable Phenotype Improves Cohort Ascertainment in a Pediatric Pulmonary Hypertension Registry.

J Pediatr 2017 09 16;188:224-231.e5. Epub 2017 Jun 16.

Computational Health Informatics Program, Boston Children's Hospital, Boston, MA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA; Department of Pediatrics, Harvard Medical School, Boston, MA. Electronic address:

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http://dx.doi.org/10.1016/j.jpeds.2017.05.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5572538PMC
September 2017

Using clinically acquired MRI to construct age-specific ADC atlases: Quantifying spatiotemporal ADC changes from birth to 6-year old.

Hum Brain Mapp 2017 06 31;38(6):3052-3068. Epub 2017 Mar 31.

Fetal-Neonatal Neuroimaging and Developmental Science Center, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.

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http://doi.wiley.com/10.1002/hbm.23573
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http://dx.doi.org/10.1002/hbm.23573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5426959PMC
June 2017

SMART-on-FHIR implemented over i2b2.

J Am Med Inform Assoc 2017 03;24(2):398-402

Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1093/jamia/ocw079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391721PMC
March 2017

Data interchange using i2b2.

J Am Med Inform Assoc 2016 09 5;23(5):909-15. Epub 2016 Feb 5.

Partners Healthcare, Boston, MA, USA Harvard Medical School, Boston, MA, USA Massachusetts General Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1093/jamia/ocv188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997035PMC
September 2016

Statin Use Is Associated With Reduced Risk of Colorectal Cancer in Patients With Inflammatory Bowel Diseases.

Clin Gastroenterol Hepatol 2016 07 22;14(7):973-9. Epub 2016 Feb 22.

Harvard Medical School, Boston, Massachusetts; Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts; Children's Hospital Boston, Boston, Massachusetts.

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http://dx.doi.org/10.1016/j.cgh.2016.02.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4912917PMC
July 2016

Comparative Effectiveness of Infliximab and Adalimumab in Crohn's Disease and Ulcerative Colitis.

Inflamm Bowel Dis 2016 Apr;22(4):880-5

*Division of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts; †Harvard Medical School, Boston, Massachusetts; ‡Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts; §Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts; ‖Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts; ¶Center for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts; **Children's Hospital Informatics Program, Boston Children's Hospital, Boston, Massachusetts; ††Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts; ‡‡Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts; §§Children's Hospital Boston, Boston, Massachusetts; and ‖‖Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1097/MIB.0000000000000754DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792716PMC
April 2016

TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits.

PLoS One 2015 7;10(4):e0122271. Epub 2015 Apr 7.

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122271PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4388675PMC
March 2016

Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort.

Inflamm Bowel Dis 2016 Jan;22(1):151-8

*Division of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts; †Harvard Medical School, Boston, Massachusetts; ‡Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts; §Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts; ‖Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts; ¶Center for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts; **Children's Hospital Informatics Program, Boston Children's Hospital, Boston, Massachusetts; ††i2b2 National Center for Biomedical Computing, Brigham and Women's Hospital, Boston, Massachusetts; ‡‡Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts; §§Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts; and ‖‖Children's Hospital Boston, Boston, Massachusetts.

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http://dx.doi.org/10.1097/MIB.0000000000000580DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772891PMC
January 2016

An eMERGE Clinical Center at Partners Personalized Medicine.

J Pers Med 2016 Jan 20;6(1). Epub 2016 Jan 20.

Partners Personalized Medicine, 65 Landsdowne Street, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.3390/jpm6010005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810384PMC
January 2016

Common Genetic Variants Influence Circulating Vitamin D Levels in Inflammatory Bowel Diseases.

Inflamm Bowel Dis 2015 Nov;21(11):2507-14

*Division of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts; †Harvard Medical School, Boston, Massachusetts; ‡Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts; §Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts; ‖Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts; ¶Center for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts; **i2b2 National Center for Biomedical Computing, Boston, Massachusetts; ††Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts; ‡‡Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts; §§Children's Hospital Boston, Boston, Massachusetts; and ‖‖Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, Massachusetts.

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http://pdfs.journals.lww.com/ibdjournal/2015/11000/Common_Ge
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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/MIB.0000000000000524DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615315PMC
November 2015

Brain extraction in pediatric ADC maps, toward characterizing neuro-development in multi-platform and multi-institution clinical images.

Neuroimage 2015 Nov 7;122:246-61. Epub 2015 Aug 7.

Laboratory for Computational Neuroimaging, Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, 149 13th St, Charlestown, MA 02129, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2015.08.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4966541PMC
November 2015

Identification of subjects with polycystic ovary syndrome using electronic health records.

Reprod Biol Endocrinol 2015 Oct 29;13:116. Epub 2015 Oct 29.

University of Utah, Division of Endocrinology, Metabolism and Diabetes, EIHG 15 N 2030 E, Salt Lake City, 84112, USA.

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http://dx.doi.org/10.1186/s12958-015-0115-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4625743PMC
October 2015

Validation of electronic health record phenotyping of bipolar disorder cases and controls.

Am J Psychiatry 2015 Apr 12;172(4):363-72. Epub 2014 Dec 12.

From Research Information Systems and Computing, Partners HealthCare System, Boston; the Laboratory of Computer Science, the Department of Neurology, the Department of Psychiatry, the Center for Anxiety and Traumatic Stress Disorders, the Center for Experimental Drugs and Diagnostics, and the Psychiatric and Neurodevelopmental Genetics Unit, Center for Human Genetic Research, Massachusetts General Hospital, Boston; the Center for Biomedical Informatics, Harvard Medical School, Boston; the Department of Biostatistics, Harvard School of Public Health, Boston; the Psychotic Disorders Division, McLean Hospital, Belmont, Mass.; the Department of Public Health and Preventive Medicine, Oregon Health and Science University, Portland; and the Division of Psychiatric Genomics, Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York.

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http://dx.doi.org/10.1176/appi.ajp.2014.14030423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441333PMC
April 2015

Taking advantage of continuity of care documents to populate a research repository.

J Am Med Inform Assoc 2015 Mar 28;22(2):370-9. Epub 2014 Oct 28.

Partners Healthcare, Boston, Massachusetts, USA Harvard Medical School, Boston, Massachusetts, USA Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://jamia.oxfordjournals.org/content/jaminfo/22/2/370.ful
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http://jamia.oxfordjournals.org/cgi/doi/10.1136/amiajnl-2014
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http://dx.doi.org/10.1136/amiajnl-2014-003040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080729PMC
March 2015

Colonoscopy is associated with a reduced risk for colon cancer and mortality in patients with inflammatory bowel diseases.

Clin Gastroenterol Hepatol 2015 Feb 17;13(2):322-329.e1. Epub 2014 Jul 17.

Harvard Medical School, Boston, Massachusetts; Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1016/j.cgh.2014.07.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4297589PMC
February 2015

Evaluation of matched control algorithms in EHR-based phenotyping studies: a case study of inflammatory bowel disease comorbidities.

J Biomed Inform 2014 Dec 6;52:105-11. Epub 2014 Sep 6.

Partners Research Information Systems and Computing, Partners HealthCare System, One Constitution Center, Boston, MA 02129, United States; Laboratory of Computer Science, Department of Neurology, Massachusetts General Hospital, 50 Staniford Street, Boston, MA 02114, United States.

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http://dx.doi.org/10.1016/j.jbi.2014.08.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4261034PMC
December 2014

Stratification of risk for hospital admissions for injury related to fall: cohort study.

BMJ 2014 Oct 24;349:g5863. Epub 2014 Oct 24.

Center for Experimental Drugs and Diagnostics, Department of Psychiatry, Massachusetts General Hospital, Simches Research Building 6th Floor, 185 Cambridge St, Boston, MA 20114, USA Psychiatric and Neurodevelopmental Genetics Unit, Department of Psychiatry, Massachusetts General Hospital, Simches Research Building 6th Floor, 185 Cambridge St, Boston, MA 02114, USA

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208628PMC
http://dx.doi.org/10.1136/bmj.g5863DOI Listing
October 2014

Rare copy number variation in treatment-resistant major depressive disorder.

Biol Psychiatry 2014 Oct 19;76(7):536-41. Epub 2014 Jan 19.

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge; Department of Psychiatry, Massachusetts General Hospital, Boston, Massachusetts; Partners HealthCare System, Massachusetts General Hospital, Boston, Massachusetts. Electronic address:

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http://dx.doi.org/10.1016/j.biopsych.2013.10.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4104153PMC
October 2014

Mortality and extraintestinal cancers in patients with primary sclerosing cholangitis and inflammatory bowel disease.

J Crohns Colitis 2014 Sep 19;8(9):956-63. Epub 2014 Feb 19.

Harvard Medical School, Boston, MA, United States; Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, MA, United States.

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http://dx.doi.org/10.1016/j.crohns.2014.01.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136996PMC
September 2014

Modeling disease severity in multiple sclerosis using electronic health records.

PLoS One 2013 11;8(11):e78927. Epub 2013 Nov 11.

Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, United States of America ; Harvard Medical School, Boston, Massachusetts, United States of America ; Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078927PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3823928PMC
August 2014

Serum inflammatory markers and risk of colorectal cancer in patients with inflammatory bowel diseases.

Clin Gastroenterol Hepatol 2014 Aug 7;12(8):1342-8.e1. Epub 2014 Jan 7.

Harvard Medical School, Boston, Massachusetts; Division of Rheumatology, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1016/j.cgh.2013.12.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085150PMC
August 2014

Query Health: standards-based, cross-platform population health surveillance.

J Am Med Inform Assoc 2014 Jul-Aug;21(4):650-6. Epub 2014 Apr 3.

Partners Healthcare, Boston, Massachusetts, USA Harvard Medical School, Boston, Massachusetts, USA Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1136/amiajnl-2014-002707DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4078284PMC
August 2014

An electronic health records study of long-term weight gain following antidepressant use.

JAMA Psychiatry 2014 Aug;71(8):889-96

Center for Experimental Drugs and Diagnostics, Department of Psychiatry, Massachusetts General Hospital, Boston2Psychiatric and Neurodevelopmental Genetics Unit, Department of Psychiatry, Massachusetts General Hospital, Boston.

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http://dx.doi.org/10.1001/jamapsychiatry.2014.414DOI Listing
August 2014

Supporting the Health Quality Measures Format in i2b2.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:124. Epub 2013 Mar 18.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, MA, USA.

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December 2013

A mega-analysis of genome-wide association studies for major depressive disorder.

Authors:
Stephan Ripke Naomi R Wray Cathryn M Lewis Steven P Hamilton Myrna M Weissman Gerome Breen Enda M Byrne Douglas H R Blackwood Dorret I Boomsma Sven Cichon Andrew C Heath Florian Holsboer Susanne Lucae Pamela A F Madden Nicholas G Martin Peter McGuffin Pierandrea Muglia Markus M Noethen Brenda P Penninx Michele L Pergadia James B Potash Marcella Rietschel Danyu Lin Bertram Müller-Myhsok Jianxin Shi Stacy Steinberg Hans J Grabe Paul Lichtenstein Patrik Magnusson Roy H Perlis Martin Preisig Jordan W Smoller Kari Stefansson Rudolf Uher Zoltan Kutalik Katherine E Tansey Alexander Teumer Alexander Viktorin Michael R Barnes Thomas Bettecken Elisabeth B Binder René Breuer Victor M Castro Susanne E Churchill William H Coryell Nick Craddock Ian W Craig Darina Czamara Eco J De Geus Franziska Degenhardt Anne E Farmer Maurizio Fava Josef Frank Vivian S Gainer Patience J Gallagher Scott D Gordon Sergey Goryachev Magdalena Gross Michel Guipponi Anjali K Henders Stefan Herms Ian B Hickie Susanne Hoefels Witte Hoogendijk Jouke Jan Hottenga Dan V Iosifescu Marcus Ising Ian Jones Lisa Jones Tzeng Jung-Ying James A Knowles Isaac S Kohane Martin A Kohli Ania Korszun Mikael Landen William B Lawson Glyn Lewis Donald Macintyre Wolfgang Maier Manuel Mattheisen Patrick J McGrath Andrew McIntosh Alan McLean Christel M Middeldorp Lefkos Middleton Grant M Montgomery Shawn N Murphy Matthias Nauck Willem A Nolen Dale R Nyholt Michael O'Donovan Högni Oskarsson Nancy Pedersen William A Scheftner Andrea Schulz Thomas G Schulze Stanley I Shyn Engilbert Sigurdsson Susan L Slager Johannes H Smit Hreinn Stefansson Michael Steffens Thorgeir Thorgeirsson Federica Tozzi Jens Treutlein Manfred Uhr Edwin J C G van den Oord Gerard Van Grootheest Henry Völzke Jeffrey B Weilburg Gonneke Willemsen Frans G Zitman Benjamin Neale Mark Daly Douglas F Levinson Patrick F Sullivan

Mol Psychiatry 2013 Apr 3;18(4):497-511. Epub 2012 Apr 3.

Harvard University/Broad Institute, USA.

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http://dx.doi.org/10.1038/mp.2012.21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3837431PMC
April 2013

Computing health quality measures using Informatics for Integrating Biology and the Bedside.

J Med Internet Res 2013 Apr 19;15(4):e75. Epub 2013 Apr 19.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, MA 02129, United States.

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http://dx.doi.org/10.2196/jmir.2493DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3636801PMC
April 2013

The SMART Platform: early experience enabling substitutable applications for electronic health records.

J Am Med Inform Assoc 2012 Jul-Aug;19(4):597-603. Epub 2012 Mar 17.

Children's Hospital Informatics Program at Harvard-MIT Health Sciences and Technology, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1136/amiajnl-2011-000622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384120PMC
December 2012

A translational engine at the national scale: informatics for integrating biology and the bedside.

J Am Med Inform Assoc 2012 Mar-Apr;19(2):181-5. Epub 2011 Nov 10.

Harvard Medical School Center for Biomedical Informatics, Boston, Massachusetts 02115, USA.

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https://academic.oup.com/jamia/article-lookup/doi/10.1136/am
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http://dx.doi.org/10.1136/amiajnl-2011-000492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277623PMC
May 2012

Strategies for maintaining patient privacy in i2b2.

J Am Med Inform Assoc 2011 Dec 7;18 Suppl 1:i103-8. Epub 2011 Oct 7.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1136/amiajnl-2011-000316DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3241166PMC
December 2011

Genetic basis of autoantibody positive and negative rheumatoid arthritis risk in a multi-ethnic cohort derived from electronic health records.

Am J Hum Genet 2011 Jan;88(1):57-69

Division of Rheumatology, Immunology, and Allergy and Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA; Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1016/j.ajhg.2010.12.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3014362PMC
January 2011

I am Not Dead Yet: Identification of False-Positive Matches to Death Master File.

AMIA Annu Symp Proc 2010 Nov 13;2010:807-11. Epub 2010 Nov 13.

Partners HealthCare System, Inc.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041274PMC
November 2010

The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

J Am Med Inform Assoc 2009 Sep-Oct;16(5):624-30. Epub 2009 Jun 30.

Information Technology, Harvard Medical School, 107 Avenue Louis Pasteur, Boston, MA 02115, USA.

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http://dx.doi.org/10.1197/jamia.M3191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2744712PMC
January 2010

STROBE-based methodology for detection of adverse events across multiple communities.

AMIA Annu Symp Proc 2008 Nov 6:1144. Epub 2008 Nov 6.

Massachusetts General Hospital, Partners Healthcare, Boston, MA, USA.

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November 2008

A study of the age attribute in a query tool for a clinical data warehouse.

AMIA Annu Symp Proc 2008 Nov 6:1123. Epub 2008 Nov 6.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, MA, USA.

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November 2008

Integrating outside modules into the i2b2 architecture.

AMIA Annu Symp Proc 2008 Nov 6:1054. Epub 2008 Nov 6.

Partners Healthcare Inc., Boston, MA, USA.

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November 2008

E-facts: business process management in clinical data repositories.

AMIA Annu Symp Proc 2008 Nov 6:1170. Epub 2008 Nov 6.

Massachusetts General Hospital, Partners HealthCare System, Inc., Boston, MA, USA.

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November 2008

Simulated yields of prospective specimen collection from specific patient cohorts using retrospective data from a research patient data repository.

AMIA Annu Symp Proc 2008 Nov 6:935. Epub 2008 Nov 6.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, MA, USA.

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November 2008

Mining for associations between categorical data items in a clinical data repository.

AMIA Annu Symp Proc 2007 Oct 11:945. Epub 2007 Oct 11.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, MA, USA.

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October 2007