Shawn Murphy

Shawn Murphy

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Analysis of the capacity of Salmonella enterica Typhimurium to infect the human Placenta.

Placenta 2019 Aug 26;83:43-52. Epub 2019 Jun 26.

Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA; Department of Obstetrics and Gynecology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.placenta.2019.06.386DOI Listing
August 2019

Correction to: Association between inflammation and systolic blood pressure in RA compared to patients without RA.

Arthritis Res Ther 2019 Jul 8;21(1):170. Epub 2019 Jul 8.

Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1186/s13075-019-1940-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615297PMC
July 2019

A clustering approach for detecting implausible observation values in electronic health records data.

BMC Med Inform Decis Mak 2019 Jul 23;19(1):142. Epub 2019 Jul 23.

Laboratory of Computer Science, Massachusetts General Hospital, 50 Staniford Street, Suite 750, Boston, MA, 02114, USA.

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http://dx.doi.org/10.1186/s12911-019-0852-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6652024PMC
July 2019

Identification of the novel Ido1 imprinted locus and its potential epigenetic role in pregnancy loss.

Hum Mol Genet 2019 02;28(4):662-674

Department of Environmental Medicine, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA.

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http://dx.doi.org/10.1093/hmg/ddy383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6360327PMC
February 2019

Data model harmonization for the All Of Us Research Program: Transforming i2b2 data into the OMOP common data model.

PLoS One 2019 19;14(2):e0212463. Epub 2019 Feb 19.

Research Information Science and Computing, Partners Healthcare, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0212463PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380544PMC
February 2019

Type I interferons differentially modulate maternal host immunity to infection by Listeria monocytogenes and Salmonella enterica serovar Typhimurium during pregnancy.

Am J Reprod Immunol 2019 Jan 4;81(1):e13068. Epub 2018 Dec 4.

Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Ontario, Canada.

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http://doi.wiley.com/10.1111/aji.13068
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http://dx.doi.org/10.1111/aji.13068DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6344237PMC
January 2019

Semi-supervised encoding for outlier detection in clinical observation data.

Comput Methods Programs Biomed 2019 Jan 12:104830. Epub 2019 Jan 12.

Harvard Medical School, Boston, MA, USA; Massachusetts General Hospital, Boston, MA, USA; Partners Healthcare, Somerville, MA, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01692607183075
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http://dx.doi.org/10.1016/j.cmpb.2019.01.002DOI Listing
January 2019

SLC11A1 is expressed in the human placenta across multiple gestational ages.

Placenta 2019 Jan 22;75:23-26. Epub 2018 Nov 22.

Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.placenta.2018.11.009DOI Listing
January 2019

Automated Population of an i2b2 Clinical Data Warehouse using FHIR.

AMIA Annu Symp Proc 2018 5;2018:979-988. Epub 2018 Dec 5.

Department of Health Sciences Research, Mayo Clinic, Rochester MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371332PMC
December 2018

Field of View Normalization in Multi-Site Brain MRI.

Neuroinformatics 2018 10;16(3-4):431-444

Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1007/s12021-018-9359-zDOI Listing
October 2018

Web services for data warehouses: OMOP and PCORnet on i2b2.

J Am Med Inform Assoc 2018 10;25(10):1331-1338

Research Information Science and Computing, Partners Healthcare, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1093/jamia/ocy093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6188504PMC
October 2018

The Association Between Arthralgia and Vedolizumab Using Natural Language Processing.

Inflamm Bowel Dis 2018 09;24(10):2242-2246

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1093/ibd/izy127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140445PMC
September 2018

Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study.

Neurology 2018 09 22;91(12):e1175-e1181. Epub 2018 Aug 22.

From the Department of Neurosurgery (A.C., R.F.R., R.D.), Brigham and Women's Hospital, Harvard Medical School; Research Information Systems and Computing (V.M.C., V.G., S.M.); Department of Medicine (S.Y., S.T.W.), Division of Rheumatology, Immunology and Allergy (N.A.S.), and Channing Division of Network Medicine (S.T.W., R.D.), Brigham and Women's Hospital, Boston, MA; Center for Statistical Science (S.Y.), Tsinghua University, Beijing, China; Boston Children's Hospital Informatics Program (D.D., S.F., G.S.), MA; Department of Computer Science (D.D.), Loyola University, Chicago, IL; Department of Neurology (S.M.), Massachusetts General Hospital; and Biostatistics (T.C.), Harvard T.H. Chan School of Public Health, Boston, MA.

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http://dx.doi.org/10.1212/WNL.0000000000006200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6161553PMC
September 2018

Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms.

Stroke 2018 09;49(9):2046-2052

From the Department of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA (A.C., R.D.).

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http://dx.doi.org/10.1161/STROKEAHA.118.022412DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6205738PMC
September 2018

Heroin Use Is Associated with Ruptured Saccular Aneurysms.

Transl Stroke Res 2018 08 4;9(4):340-346. Epub 2017 Nov 4.

Department of Neurosurgery, Brigham and Women's Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1007/s12975-017-0582-yDOI Listing
August 2018

Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms.

Stroke 2018 07 29;49(7):1747-1750. Epub 2018 May 29.

From the Department of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA (A.C., R.F.R., R.D.)

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http://dx.doi.org/10.1161/STROKEAHA.118.020963DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019530PMC
July 2018

Association between inflammation and systolic blood pressure in RA compared to patients without RA.

Arthritis Res Ther 2018 06 1;20(1):107. Epub 2018 Jun 1.

Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1186/s13075-018-1597-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984318PMC
June 2018

Identifying Patients With High Data Completeness to Improve Validity of Comparative Effectiveness Research in Electronic Health Records Data.

Clin Pharmacol Ther 2018 05 10;103(5):899-905. Epub 2017 Oct 10.

Division of Pharmacoepidemiology and Pharmacoeconomics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1002/cpt.861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6026022PMC
May 2018

The Ad-Hoc Uncertainty Principle of Patient Privacy.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:132-138. Epub 2018 May 18.

Harvard Medical School.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961824PMC
May 2018

Feasibility of Homomorphic Encryption for Sharing I2B2 Aggregate-Level Data in the Cloud.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:176-185. Epub 2018 May 18.

Partners Healthcare, Boston, MA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961814PMC
May 2018

i2b2 implemented over SMART-on-FHIR.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:369-378. Epub 2018 May 18.

LIMSI, CNRS, Université Paris-Saclay, Orsay, France.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961782PMC
May 2018

Alcohol Consumption and Aneurysmal Subarachnoid Hemorrhage.

Transl Stroke Res 2018 02 27;9(1):13-19. Epub 2017 Jul 27.

Department of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, 60 Fenwood Road, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1007/s12975-017-0557-zDOI Listing
February 2018

Supporting Multi-sourced Medication Information in i2b2.

AMIA Annu Symp Proc 2015 5;2015:747-55. Epub 2015 Nov 5.

Harvard Medical School, Boston, MA;; Boston Children's Hospital, Boston MA;

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765563PMC
January 2018

Enabling phenotypic big data with PheNorm.

J Am Med Inform Assoc 2018 01;25(1):54-60

Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.

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http://dx.doi.org/10.1093/jamia/ocx111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251688PMC
January 2018

Antihyperglycemic Agents Are Inversely Associated With Intracranial Aneurysm Rupture.

Stroke 2018 01 4;49(1):34-39. Epub 2017 Dec 4.

From the Department of Neurosurgery (A.C., R.D.), Department of Medicine (S.Y., S.T.W.), Division of Rheumatology, Immunology, and Allergy (N.A.S.), and Channing Division of Network Medicine (S.T.W., R.D.), Brigham and Women's Hospital, Harvard Medical School, Boston, MA; Research Information Systems and Computing, Partners Healthcare, Boston, MA (V.M.C., V.G., S.M.); Center for Statistical Science, Tsinghua University, Beijing, China (S.Y.); Computational Health Informatics Program, Boston Children's Hospital, MA (D.D., S.F., G.S.); Department of Computer Science, Loyola University, Chicago, IL (D.D.); Department of Neurology, Massachusetts General Hospital, Boston (S.M.); and Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, MA (T.C.).

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http://dx.doi.org/10.1161/STROKEAHA.117.019249DOI Listing
January 2018

Modulation of Th17 and regulatory T-cell responses during murine pregnancy contributes to increased maternal susceptibility to Salmonella Typhimurium infection.

Am J Reprod Immunol 2017 Dec 9;78(6). Epub 2017 Oct 9.

Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON, Canada.

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http://dx.doi.org/10.1111/aji.12742DOI Listing
December 2017

Combining clinical and genomics queries using i2b2 - Three methods.

PLoS One 2017 7;12(4):e0172187. Epub 2017 Apr 7.

Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0172187PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5384666PMC
September 2017

A Computable Phenotype Improves Cohort Ascertainment in a Pediatric Pulmonary Hypertension Registry.

J Pediatr 2017 09 16;188:224-231.e5. Epub 2017 Jun 16.

Computational Health Informatics Program, Boston Children's Hospital, Boston, MA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA; Department of Pediatrics, Harvard Medical School, Boston, MA. Electronic address:

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http://dx.doi.org/10.1016/j.jpeds.2017.05.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5572538PMC
September 2017

Association of intracranial aneurysm rupture with smoking duration, intensity, and cessation.

Neurology 2017 Sep 30;89(13):1408-1415. Epub 2017 Aug 30.

From the Department of Neurosurgery (A.C., Y.H.O., S.D., R. Du), Brigham and Women's Hospital, Harvard Medical School, Boston, MA; Department of Neurosurgery (A.C., R. Dammers), Erasmus Medical Center, Erasmus MC Stroke Center, Rotterdam, the Netherlands; Research Information Systems and Computing (V.M.C., V.G., S.M.), Partners Healthcare, Boston, MA; Center for Statistical Science (S.Y.), Tsinghua University, Beijing, China; Department of Medicine (S.Y., S.T.W.), Division of Rheumatology, Immunology and Allergy (N.A.S.), and Channing Division of Network Medicine (S.T.W., R. Du), Brigham and Women's Hospital, Boston, MA; Department of Computer Science (D.D.), Loyola University, Chicago, IL; Informatics Program (D.D., S.F., G.S.), Boston Children's Hospital; Department of Neurology (S.M.), Massachusetts General Hospital; and Biostatistics (T.C.), Harvard School of Public Health, Boston, MA.

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http://dx.doi.org/10.1212/WNL.0000000000004419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5649762PMC
September 2017

Using clinically acquired MRI to construct age-specific ADC atlases: Quantifying spatiotemporal ADC changes from birth to 6-year old.

Hum Brain Mapp 2017 06 31;38(6):3052-3068. Epub 2017 Mar 31.

Fetal-Neonatal Neuroimaging and Developmental Science Center, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.

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http://doi.wiley.com/10.1002/hbm.23573
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http://dx.doi.org/10.1002/hbm.23573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5426959PMC
June 2017

Optimized logic rules reveal interferon-γ-induced modes regulated by histone deacetylases and protein tyrosine phosphatases.

Immunology 2017 05 9;151(1):71-80. Epub 2017 Feb 9.

Department of Microbiology and Immunology, University of Rochester, Rochester, NY, USA.

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http://dx.doi.org/10.1111/imm.12707DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382347PMC
May 2017

Reusable Client-Side JavaScript Modules for Immersive Web-Based Real-Time Collaborative Neuroimage Visualization.

Front Neuroinform 2017 1;11:32. Epub 2017 May 1.

Fetal-Neonatal Neuroimaging and Developmental Science Center, Boston Children's HospitalBoston, MA, USA.

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http://dx.doi.org/10.3389/fninf.2017.00032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5410600PMC
May 2017

SMART-on-FHIR implemented over i2b2.

J Am Med Inform Assoc 2017 03;24(2):398-402

Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1093/jamia/ocw079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391721PMC
March 2017

Large-scale identification of patients with cerebral aneurysms using natural language processing.

Neurology 2017 Jan 7;88(2):164-168. Epub 2016 Dec 7.

From Research Information Systems and Computing (V.M.C., V.G., S.M.), Partners Healthcare; Boston Children's Hospital Informatics Program (D.D., S.F., G.S.); Harvard Medical School (D.D., S.Y., A.C., M.A.-E.-B., N.A.S., S.M., S.T.W., R.D.); Department of Medicine (S.Y., S.T.W.), Department of Neurosurgery (A.C., M.A.-E.-B., R.D.), Division of Rheumatology, Immunology and Allergy (N.A.S.), and Channing Division of Network Medicine (S.T.W., R.D.), Brigham and Women's Hospital, Boston, MA; Center for Statistical Science (S.Y.), Tsinghua University, Beijing, China; Department of Neurology (S.M.), Massachusetts General Hospital; and Biostatistics (T.C.), Harvard School of Public Health, Boston, MA.

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http://dx.doi.org/10.1212/WNL.0000000000003490DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5224711PMC
January 2017

Data interchange using i2b2.

J Am Med Inform Assoc 2016 09 5;23(5):909-15. Epub 2016 Feb 5.

Partners Healthcare, Boston, MA, USA Harvard Medical School, Boston, MA, USA Massachusetts General Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1093/jamia/ocv188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997035PMC
September 2016

Statin Use Is Associated With Reduced Risk of Colorectal Cancer in Patients With Inflammatory Bowel Diseases.

Clin Gastroenterol Hepatol 2016 07 22;14(7):973-9. Epub 2016 Feb 22.

Harvard Medical School, Boston, Massachusetts; Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts; Children's Hospital Boston, Boston, Massachusetts.

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http://dx.doi.org/10.1016/j.cgh.2016.02.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4912917PMC
July 2016

Comparative Effectiveness of Infliximab and Adalimumab in Crohn's Disease and Ulcerative Colitis.

Inflamm Bowel Dis 2016 Apr;22(4):880-5

*Division of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts; †Harvard Medical School, Boston, Massachusetts; ‡Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts; §Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts; ‖Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts; ¶Center for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts; **Children's Hospital Informatics Program, Boston Children's Hospital, Boston, Massachusetts; ††Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts; ‡‡Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts; §§Children's Hospital Boston, Boston, Massachusetts; and ‖‖Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1097/MIB.0000000000000754DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792716PMC
April 2016

TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits.

PLoS One 2015 7;10(4):e0122271. Epub 2015 Apr 7.

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122271PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4388675PMC
March 2016

Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort.

Inflamm Bowel Dis 2016 Jan;22(1):151-8

*Division of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts; †Harvard Medical School, Boston, Massachusetts; ‡Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts; §Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts; ‖Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts; ¶Center for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts; **Children's Hospital Informatics Program, Boston Children's Hospital, Boston, Massachusetts; ††i2b2 National Center for Biomedical Computing, Brigham and Women's Hospital, Boston, Massachusetts; ‡‡Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts; §§Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts; and ‖‖Children's Hospital Boston, Boston, Massachusetts.

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http://dx.doi.org/10.1097/MIB.0000000000000580DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772891PMC
January 2016

An eMERGE Clinical Center at Partners Personalized Medicine.

J Pers Med 2016 Jan 20;6(1). Epub 2016 Jan 20.

Partners Personalized Medicine, 65 Landsdowne Street, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.3390/jpm6010005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810384PMC
January 2016

Common Genetic Variants Influence Circulating Vitamin D Levels in Inflammatory Bowel Diseases.

Inflamm Bowel Dis 2015 Nov;21(11):2507-14

*Division of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts; †Harvard Medical School, Boston, Massachusetts; ‡Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts; §Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts; ‖Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts; ¶Center for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts; **i2b2 National Center for Biomedical Computing, Boston, Massachusetts; ††Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts; ‡‡Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts; §§Children's Hospital Boston, Boston, Massachusetts; and ‖‖Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, Massachusetts.

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http://pdfs.journals.lww.com/ibdjournal/2015/11000/Common_Ge
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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
Publisher Site
http://dx.doi.org/10.1097/MIB.0000000000000524DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615315PMC
November 2015

Brain extraction in pediatric ADC maps, toward characterizing neuro-development in multi-platform and multi-institution clinical images.

Neuroimage 2015 Nov 7;122:246-61. Epub 2015 Aug 7.

Laboratory for Computational Neuroimaging, Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, 149 13th St, Charlestown, MA 02129, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2015.08.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4966541PMC
November 2015

Identification of subjects with polycystic ovary syndrome using electronic health records.

Reprod Biol Endocrinol 2015 Oct 29;13:116. Epub 2015 Oct 29.

University of Utah, Division of Endocrinology, Metabolism and Diabetes, EIHG 15 N 2030 E, Salt Lake City, 84112, USA.

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http://dx.doi.org/10.1186/s12958-015-0115-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4625743PMC
October 2015

Mission and Sustainability of Informatics for Integrating Biology and the Bedside (i2b2).

EGEMS (Wash DC) 2014 11;2(2):1074. Epub 2014 Sep 11.

Intermountain Healthcare.

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http://dx.doi.org/10.13063/2327-9214.1074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4371505PMC
April 2015

Validation of electronic health record phenotyping of bipolar disorder cases and controls.

Am J Psychiatry 2015 Apr 12;172(4):363-72. Epub 2014 Dec 12.

From Research Information Systems and Computing, Partners HealthCare System, Boston; the Laboratory of Computer Science, the Department of Neurology, the Department of Psychiatry, the Center for Anxiety and Traumatic Stress Disorders, the Center for Experimental Drugs and Diagnostics, and the Psychiatric and Neurodevelopmental Genetics Unit, Center for Human Genetic Research, Massachusetts General Hospital, Boston; the Center for Biomedical Informatics, Harvard Medical School, Boston; the Department of Biostatistics, Harvard School of Public Health, Boston; the Psychotic Disorders Division, McLean Hospital, Belmont, Mass.; the Department of Public Health and Preventive Medicine, Oregon Health and Science University, Portland; and the Division of Psychiatric Genomics, Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York.

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http://dx.doi.org/10.1176/appi.ajp.2014.14030423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441333PMC
April 2015

Taking advantage of continuity of care documents to populate a research repository.

J Am Med Inform Assoc 2015 Mar 28;22(2):370-9. Epub 2014 Oct 28.

Partners Healthcare, Boston, Massachusetts, USA Harvard Medical School, Boston, Massachusetts, USA Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://jamia.oxfordjournals.org/content/jaminfo/22/2/370.ful
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http://jamia.oxfordjournals.org/cgi/doi/10.1136/amiajnl-2014
Publisher Site
http://dx.doi.org/10.1136/amiajnl-2014-003040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080729PMC
March 2015

Colonoscopy is associated with a reduced risk for colon cancer and mortality in patients with inflammatory bowel diseases.

Clin Gastroenterol Hepatol 2015 Feb 17;13(2):322-329.e1. Epub 2014 Jul 17.

Harvard Medical School, Boston, Massachusetts; Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1016/j.cgh.2014.07.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4297589PMC
February 2015

Evaluation of matched control algorithms in EHR-based phenotyping studies: a case study of inflammatory bowel disease comorbidities.

J Biomed Inform 2014 Dec 6;52:105-11. Epub 2014 Sep 6.

Partners Research Information Systems and Computing, Partners HealthCare System, One Constitution Center, Boston, MA 02129, United States; Laboratory of Computer Science, Department of Neurology, Massachusetts General Hospital, 50 Staniford Street, Boston, MA 02114, United States.

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http://dx.doi.org/10.1016/j.jbi.2014.08.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4261034PMC
December 2014

Stratification of risk for hospital admissions for injury related to fall: cohort study.

BMJ 2014 Oct 24;349:g5863. Epub 2014 Oct 24.

Center for Experimental Drugs and Diagnostics, Department of Psychiatry, Massachusetts General Hospital, Simches Research Building 6th Floor, 185 Cambridge St, Boston, MA 20114, USA Psychiatric and Neurodevelopmental Genetics Unit, Department of Psychiatry, Massachusetts General Hospital, Simches Research Building 6th Floor, 185 Cambridge St, Boston, MA 02114, USA

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208628PMC
http://dx.doi.org/10.1136/bmj.g5863DOI Listing
October 2014

Rare copy number variation in treatment-resistant major depressive disorder.

Biol Psychiatry 2014 Oct 19;76(7):536-41. Epub 2014 Jan 19.

Stanley Center for Psychiatric Research, Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge; Department of Psychiatry, Massachusetts General Hospital, Boston, Massachusetts; Partners HealthCare System, Massachusetts General Hospital, Boston, Massachusetts. Electronic address:

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http://dx.doi.org/10.1016/j.biopsych.2013.10.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4104153PMC
October 2014

Mortality and extraintestinal cancers in patients with primary sclerosing cholangitis and inflammatory bowel disease.

J Crohns Colitis 2014 Sep 19;8(9):956-63. Epub 2014 Feb 19.

Harvard Medical School, Boston, MA, United States; Division of Rheumatology, Allergy and Immunology, Brigham and Women's Hospital, Boston, MA, United States.

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http://dx.doi.org/10.1016/j.crohns.2014.01.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136996PMC
September 2014

Modeling disease severity in multiple sclerosis using electronic health records.

PLoS One 2013 11;8(11):e78927. Epub 2013 Nov 11.

Department of Neurology, Brigham and Women's Hospital, Boston, Massachusetts, United States of America ; Harvard Medical School, Boston, Massachusetts, United States of America ; Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078927PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3823928PMC
August 2014

Serum inflammatory markers and risk of colorectal cancer in patients with inflammatory bowel diseases.

Clin Gastroenterol Hepatol 2014 Aug 7;12(8):1342-8.e1. Epub 2014 Jan 7.

Harvard Medical School, Boston, Massachusetts; Division of Rheumatology, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1016/j.cgh.2013.12.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085150PMC
August 2014

Query Health: standards-based, cross-platform population health surveillance.

J Am Med Inform Assoc 2014 Jul-Aug;21(4):650-6. Epub 2014 Apr 3.

Partners Healthcare, Boston, Massachusetts, USA Harvard Medical School, Boston, Massachusetts, USA Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1136/amiajnl-2014-002707DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4078284PMC
August 2014

An electronic health records study of long-term weight gain following antidepressant use.

JAMA Psychiatry 2014 Aug;71(8):889-96

Center for Experimental Drugs and Diagnostics, Department of Psychiatry, Massachusetts General Hospital, Boston2Psychiatric and Neurodevelopmental Genetics Unit, Department of Psychiatry, Massachusetts General Hospital, Boston.

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http://dx.doi.org/10.1001/jamapsychiatry.2014.414DOI Listing
August 2014

Radio-responsive tumors exhibit greater intratumoral immune activity than nonresponsive tumors.

Int J Cancer 2014 May 11;134(10):2383-92. Epub 2013 Nov 11.

Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY.

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http://dx.doi.org/10.1002/ijc.28558DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949198PMC
May 2014

Morphological and phenotypic analyses of the human placenta using whole mount immunofluorescence.

Biol Reprod 2014 May 19;90(5):110. Epub 2014 Mar 19.

Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, Rochester, New York Department of Obstetrics and Gynecology, University of Rochester School of Medicine and Dentistry, Rochester, New York

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http://dx.doi.org/10.1095/biolreprod.113.115915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076371PMC
May 2014

Type I interferons induced by radiation therapy mediate recruitment and effector function of CD8(+) T cells.

Cancer Immunol Immunother 2014 Mar 20;63(3):259-71. Epub 2013 Dec 20.

Department of Microbiology and Immunology, University of Rochester, Rochester, 601 Elmwood Ave, Box 672, Rochester, NY, 14642, USA.

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http://dx.doi.org/10.1007/s00262-013-1506-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944132PMC
March 2014

Supporting the Health Quality Measures Format in i2b2.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:124. Epub 2013 Mar 18.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, MA, USA.

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December 2013

IFN-γ mediates the antitumor effects of radiation therapy in a murine colon tumor.

Am J Pathol 2013 Jun 12;182(6):2345-54. Epub 2013 Apr 12.

Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14642, USA.

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http://dx.doi.org/10.1016/j.ajpath.2013.02.041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668027PMC
June 2013

Computing health quality measures using Informatics for Integrating Biology and the Bedside.

J Med Internet Res 2013 Apr 19;15(4):e75. Epub 2013 Apr 19.

Laboratory of Computer Science, Massachusetts General Hospital, Boston, MA 02129, United States.

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http://dx.doi.org/10.2196/jmir.2493DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3636801PMC
April 2013