Sharon R Browning

Sharon R Browning

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Sharon R Browning

Sharon R Browning

Publications by authors named "Sharon R Browning"

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Estimating the Genome-wide Mutation Rate with Three-Way Identity by Descent.

Am J Hum Genet 2019 Nov 3;105(5):883-893. Epub 2019 Oct 3.

Department of Biostatistics, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2019.09.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6848988PMC
November 2019

Genome-wide Significance Thresholds for Admixture Mapping Studies.

Am J Hum Genet 2019 03 14;104(3):454-465. Epub 2019 Feb 14.

Department of Biostatistics, University of Washington, Seattle, WA 98195, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00029297193000
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http://dx.doi.org/10.1016/j.ajhg.2019.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6407497PMC
March 2019

A One-Penny Imputed Genome from Next-Generation Reference Panels.

Am J Hum Genet 2018 09 9;103(3):338-348. Epub 2018 Aug 9.

Department of Biostatistics, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1016/j.ajhg.2018.07.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128308PMC
September 2018

POPdemog: visualizing population demographic history from simulation scripts.

Bioinformatics 2018 08;34(16):2854-2855

Department of Biostatistics, University of Washington, WA, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6084562PMC
August 2018

Ancestry-specific recent effective population size in the Americas.

PLoS Genet 2018 05 24;14(5):e1007385. Epub 2018 May 24.

Department of Biostatistics, University of Washington, Seattle, WA, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5967706PMC
May 2018

Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.

Cell 2018 03 15;173(1):53-61.e9. Epub 2018 Mar 15.

Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA; The Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.

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http://dx.doi.org/10.1016/j.cell.2018.02.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5866234PMC
March 2018

Robust Inference of Identity by Descent from Exome-Sequencing Data.

Am J Hum Genet 2016 Nov 13;99(5):1106-1116. Epub 2016 Oct 13.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.09.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5097937PMC
November 2016

ASAFE: ancestry-specific allele frequency estimation.

Bioinformatics 2016 07 3;32(14):2227-9. Epub 2016 May 3.

Department of Biostatistics and.

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http://dx.doi.org/10.1093/bioinformatics/btw220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937201PMC
July 2016

Genotype Imputation with Millions of Reference Samples.

Am J Hum Genet 2016 Jan;98(1):116-26

Department of Biostatistics, University of Washington, Seattle, WA 98195, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00029297150049
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http://dx.doi.org/10.1016/j.ajhg.2015.11.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716681PMC
January 2016

Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent.

Am J Hum Genet 2015 Sep 20;97(3):404-18. Epub 2015 Aug 20.

Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1016/j.ajhg.2015.07.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4564943PMC
September 2015

Genome-wide haplotypic testing in a Finnish cohort identifies a novel association with low-density lipoprotein cholesterol.

Eur J Hum Genet 2015 May 4;23(5):672-7. Epub 2014 Jun 4.

Department of Biostatistics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1038/ejhg.2014.105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402615PMC
May 2015

Efficient clustering of identity-by-descent between multiple individuals.

Bioinformatics 2014 Apr 19;30(7):915-22. Epub 2013 Dec 19.

Bioinformatics Research Center, Aarhus Universitet, 8000C Aarhus, Denmark, Department of Biostatistics and Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967111PMC
April 2014

Detecting identity by descent and estimating genotype error rates in sequence data.

Am J Hum Genet 2013 Nov 24;93(5):840-51. Epub 2013 Oct 24.

Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2013.09.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3824133PMC
November 2013

Imputation-based genomic coverage assessments of current human genotyping arrays.

G3 (Bethesda) 2013 Oct 3;3(10):1795-807. Epub 2013 Oct 3.

Department of Biostatistics, University of Washington, Seattle, Washington, 98195.

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http://dx.doi.org/10.1534/g3.113.007161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3789804PMC
October 2013

Improving the accuracy and efficiency of identity-by-descent detection in population data.

Genetics 2013 Jun 27;194(2):459-71. Epub 2013 Mar 27.

Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1534/genetics.113.150029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664855PMC
June 2013

Identity by descent between distant relatives: detection and applications.

Annu Rev Genet 2012 17;46:617-33. Epub 2012 Sep 17.

Department of Statistics, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1146/annurev-genet-110711-155534DOI Listing
April 2013

Deletion at the SLC1A1 glutamate transporter gene co-segregates with schizophrenia and bipolar schizoaffective disorder in a 5-generation family.

Am J Med Genet B Neuropsychiatr Genet 2013 Mar 22;162B(2):87-95. Epub 2013 Jan 22.

Department of Psychiatry and Behavioral Sciences, SUNY Upstate Medical University, Syracuse, NY 13210, USA.

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http://dx.doi.org/10.1002/ajmg.b.32125DOI Listing
March 2013

Identity-by-descent-based heritability analysis in the Northern Finland Birth Cohort.

Hum Genet 2013 Feb 29;132(2):129-38. Epub 2012 Sep 29.

Department of Biostatistics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1007/s00439-012-1230-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543768PMC
February 2013

Detecting rare variant associations by identity-by-descent mapping in case-control studies.

Genetics 2012 Apr 20;190(4):1521-31. Epub 2012 Jan 20.

Department of Biostatistics, University of Washington, Seattle, Washington 98195, USA.

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http://www.genetics.org/cgi/doi/10.1534/genetics.111.136937
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http://dx.doi.org/10.1534/genetics.111.136937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316661PMC
April 2012

Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.

Ann Neurol 2011 Dec;70(6):897-912

Program in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Department of Neurology, Brigham and Women's Hospital, Boston, MA 02115, USA.

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http://doi.wiley.com/10.1002/ana.22609
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http://dx.doi.org/10.1002/ana.22609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3247076PMC
December 2011

Haplotype phasing: existing methods and new developments.

Nat Rev Genet 2011 Sep 16;12(10):703-14. Epub 2011 Sep 16.

Department of Biostatistics, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1038/nrg3054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3217888PMC
September 2011

A fast, powerful method for detecting identity by descent.

Am J Hum Genet 2011 Feb;88(2):173-82

Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98105, USA.

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http://dx.doi.org/10.1016/j.ajhg.2011.01.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035716PMC
February 2011

Population structure with localized haplotype clusters.

Genetics 2010 Aug 10;185(4):1337-44. Epub 2010 May 10.

Department of Statistics, University of Auckland, Auckland 1142, New Zealand.

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http://dx.doi.org/10.1534/genetics.110.116681DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2927760PMC
August 2010

High-resolution detection of identity by descent in unrelated individuals.

Am J Hum Genet 2010 Apr 18;86(4):526-39. Epub 2010 Mar 18.

Department of Statistics, University of Auckland, Auckland, New Zealand.

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http://linkinghub.elsevier.com/retrieve/pii/S000292971000103
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http://dx.doi.org/10.1016/j.ajhg.2010.02.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2850444PMC
April 2010

Saliva-derived DNA performs well in large-scale, high-density single-nucleotide polymorphism microarray studies.

Cancer Epidemiol Biomarkers Prev 2010 Mar 3;19(3):794-8. Epub 2010 Mar 3.

The Walter and Eliza Hall Institute of Medical Research, Parkville 3052, Victoria, Australia.

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http://dx.doi.org/10.1158/1055-9965.EPI-09-0812DOI Listing
March 2010

Multilocus analysis of GAW15 NARAC chromosome 18 case-control data.

BMC Proc 2007 18;1 Suppl 1:S11. Epub 2007 Dec 18.

Department of Statistics, The University of Auckland, Private Bag 92019, Auckland, New Zealand.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367534PMC
http://dx.doi.org/10.1186/1753-6561-1-s1-s11DOI Listing
December 2009

A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals.

Am J Hum Genet 2009 Feb 5;84(2):210-23. Epub 2009 Feb 5.

Department of Statistics, University of Auckland, Auckland 1142, New Zealand.

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http://dx.doi.org/10.1016/j.ajhg.2009.01.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2668004PMC
February 2009

A groupwise association test for rare mutations using a weighted sum statistic.

PLoS Genet 2009 Feb 13;5(2):e1000384. Epub 2009 Feb 13.

Bioinformatics Research Center, University of Aarhus, Aarhus C, Denmark.

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http://dx.doi.org/10.1371/journal.pgen.1000384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633048PMC
February 2009

Missing data imputation and haplotype phase inference for genome-wide association studies.

Hum Genet 2008 Dec 11;124(5):439-50. Epub 2008 Oct 11.

Department of Statistics, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.

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http://dx.doi.org/10.1007/s00439-008-0568-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2731769PMC
December 2008

A canine model of inherited myopia: familial aggregation of refractive error in labrador retrievers.

Invest Ophthalmol Vis Sci 2008 Nov 19;49(11):4784-9. Epub 2008 Jun 19.

Department of Optometry and Vision Science, University of Auckland, Auckland, New Zealand.

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http://dx.doi.org/10.1167/iovs.08-1828DOI Listing
November 2008

Haplotypic analysis of Wellcome Trust Case Control Consortium data.

Hum Genet 2008 Apr 26;123(3):273-80. Epub 2008 Jan 26.

Department of Statistics, The University of Auckland, Private Bag 92019, Auckland, New Zealand,

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http://link.springer.com/10.1007/s00439-008-0472-1
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http://dx.doi.org/10.1007/s00439-008-0472-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2384233PMC
April 2008

Estimation of pairwise identity by descent from dense genetic marker data in a population sample of haplotypes.

Genetics 2008 Apr;178(4):2123-32

Department of Statistics, The University of Auckland, Auckland 1142, New Zealand.

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http://dx.doi.org/10.1534/genetics.107.084624DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323802PMC
April 2008

Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering.

Am J Hum Genet 2007 Nov 21;81(5):1084-97. Epub 2007 Sep 21.

Department of Statistics, The University of Auckland, Auckland, New Zealand.

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http://dx.doi.org/10.1086/521987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2265661PMC
November 2007

Efficient multilocus association testing for whole genome association studies using localized haplotype clustering.

Genet Epidemiol 2007 Jul;31(5):365-75

Department of Statistics, The University of Auckland, Auckland, New Zealand.

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http://dx.doi.org/10.1002/gepi.20216DOI Listing
July 2007

Multilocus association mapping using variable-length Markov chains.

Am J Hum Genet 2006 Jun 7;78(6):903-13. Epub 2006 Apr 7.

Department of Statistics, The University of Auckland, Auckland 92019, New Zealand.

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http://dx.doi.org/10.1086/503876DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1474089PMC
June 2006

Case-control single-marker and haplotypic association analysis of pedigree data.

Genet Epidemiol 2005 Feb;28(2):110-22

Genetics Research, GlaxoSmithKline, Research Triangle Park, North Carolina 27709, USA.

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http://dx.doi.org/10.1002/gepi.20051DOI Listing
February 2005