Publications by authors named "Shanlin Liu"

57Publications

Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers.

Mol Ecol 2020 Oct 16. Epub 2020 Oct 16.

Division of Evolutionary Biology, Faculty of Biology II, Ludwig- Maximilians-Universität München, München, Germany.

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http://dx.doi.org/10.1111/mec.15695DOI Listing
October 2020

Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

BMC Biol 2020 Sep 11;18(1):123. Epub 2020 Sep 11.

IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650, Le Rheu, France.

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http://dx.doi.org/10.1186/s12915-020-00864-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7488435PMC
September 2020

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

BMC Biol 2020 07 23;18(1):90. Epub 2020 Jul 23.

IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650, Le Rheu, France.

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http://dx.doi.org/10.1186/s12915-020-00820-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376646PMC
July 2020

A New Method for Measuring the Rotational Angles of a Precision Spherical Joint Using Eddy Current Sensors.

Sensors (Basel) 2020 Jul 20;20(14). Epub 2020 Jul 20.

School of Instrument Science and Opto-electronic Engineering, Hefei University of Technology, Hefei 230009, China.

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http://dx.doi.org/10.3390/s20144020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7412033PMC
July 2020

Re-assessing the diversity of negative strand RNA viruses in insects.

PLoS Pathog 2019 12 12;15(12):e1008224. Epub 2019 Dec 12.

Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Free University, Humboldt-University and Berlin Institute of Health, Berlin, Germany.

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http://dx.doi.org/10.1371/journal.ppat.1008224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6932829PMC
December 2019

NextPolish: a fast and efficient genome polishing tool for long-read assembly.

Bioinformatics 2020 04;36(7):2253-2255

GrandOmics Biosciences, Beijing, 102200, China.

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http://dx.doi.org/10.1093/bioinformatics/btz891DOI Listing
April 2020

Liver-targeted Nano-MitoPBN normalizes glucose metabolism by improving mitochondrial redox balance.

Biomaterials 2019 11 26;222:119457. Epub 2019 Aug 26.

Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Fudan University, Shanghai, 200032, People's Republic of China. Electronic address:

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http://dx.doi.org/10.1016/j.biomaterials.2019.119457DOI Listing
November 2019

First mitochondrial genomes of five hoverfly species of the genus s (Diptera: Syrphidae).

Genome 2019 Oct 8;62(10):677-687. Epub 2019 Jul 8.

Royal Museum for Central Africa, JEMU and BopCo, Leuvensesteenweg 13, B-3080 Tervuren, Belgium.

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http://dx.doi.org/10.1139/gen-2019-0009DOI Listing
October 2019

[Application of copy number variation sequencing for prenatal diagnosis in women at an advanced maternal age].

Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2019 Jun;36(6):533-537

Department of Obstetrics and Gynecology, Key Laboratory of Birth Defects and Related Diseases of Women and Children, Ministry of Education, West China Second Hospital of Sichuan University, Chengdu, Sichuan 610041, China. Email:

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http://dx.doi.org/10.3760/cma.j.issn.1003-9406.2019.06.001DOI Listing
June 2019

Short-term high salt intake impairs hepatic mitochondrial bioenergetics and biosynthesis in SIRT3 knockout mice.

Free Radic Res 2019 Apr 2;53(4):387-396. Epub 2019 May 2.

a Department of Biochemistry and Molecular Biology , School of Basic Medical Sciences, Fudan University , Shanghai , People's Republic of China.

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http://dx.doi.org/10.1080/10715762.2019.1580499DOI Listing
April 2019

Prospective chromosome analysis of 3429 amniocentesis samples in China using copy number variation sequencing.

Am J Obstet Gynecol 2018 09 29;219(3):287.e1-287.e18. Epub 2018 May 29.

Department of Obstetrics and Gynecology, West China Second University Hospital of Sichuan University and the Key Laboratory of Birth Defects and Related Diseases of Women and Children, Sichuan University, Ministry of Education, Chengdu, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00029378183044
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http://dx.doi.org/10.1016/j.ajog.2018.05.030DOI Listing
September 2018

Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples.

Mol Ecol Resour 2018 Apr 18. Epub 2018 Apr 18.

School of Biological Sciences, Molecular Ecology and Fisheries Genetics Laboratory, Bangor University, Bangor, UK.

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http://doi.wiley.com/10.1111/1755-0998.12888
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http://dx.doi.org/10.1111/1755-0998.12888DOI Listing
April 2018

Characterization of viral RNA splicing using whole-transcriptome datasets from host species.

Sci Rep 2018 02 19;8(1):3273. Epub 2018 Feb 19.

Beijing Advanced Innovation Center for Food Nutrition and Human Health, College of Plant Protection, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1038/s41598-018-21190-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818608PMC
February 2018

The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera.

BMC Evol Biol 2017 12 28;17(1):269. Epub 2017 Dec 28.

Beijing Advanced Innovation Center for Food Nutrition and Human Health, China Agricultural University, Beijing, 100193, China.

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http://dx.doi.org/10.1186/s12862-017-1111-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5745899PMC
December 2017

A phylogenomic analysis of lichen-feeding tiger moths uncovers evolutionary origins of host chemical sequestration.

Mol Phylogenet Evol 2018 04 20;121:23-34. Epub 2017 Dec 20.

Department of Entomology, 901 West State Street, Purdue University, West Lafayette, IN 47907, USA; Milwaukee Public Museum, 800 W Wells St, Milwaukee, WI 53233, USA.

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http://dx.doi.org/10.1016/j.ympev.2017.12.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5809314PMC
April 2018

Filling reference gaps via assembling DNA barcodes using high-throughput sequencing-moving toward barcoding the world.

Gigascience 2017 12;6(12):1-8

Beijing Advanced Innovation Center for Food Nutrition and Human Health, College of Plant Protection, China Agricultural University, Beijing 100193, People's Republic of China.

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http://dx.doi.org/10.1093/gigascience/gix104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5726475PMC
December 2017

Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes.

Gigascience 2017 10;6(10):1-14

Beijing Advanced Innovation Center for Food Nutrition and Human Health, China Agricultural University, 2 West Yuanmingyuan Rd., Haidian District, Beijing 100193, China.

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http://dx.doi.org/10.1093/gigascience/gix073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5632299PMC
October 2017

Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae).

Mol Phylogenet Evol 2017 11 6;116:213-226. Epub 2017 Sep 6.

Center for Molecular Biodiversity Research, Zoological Research Museum Alexander Koenig, Adenauerallee 160, 53113 Bonn, Germany; Department of Evolutionary Biology and Ecology, Institute for Biology I (Zoology), University of Freiburg, Hauptstraße 1, 79104 Freiburg, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2017.08.020DOI Listing
November 2017

Evolutionary History of the Hymenoptera.

Curr Biol 2017 Apr 23;27(7):1013-1018. Epub 2017 Mar 23.

Center for Molecular Biodiversity Research, Zoologisches Forschungsmuseum Alexander Koenig, 53113 Bonn, Germany; Department of Evolutionary Biology and Ecology, Institute for Biology I (Zoology), University of Freiburg, 79104 Freiburg (Brsg.), Germany; School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2017.01.027DOI Listing
April 2017

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes.

BMC Bioinformatics 2017 Feb 16;18(1):111. Epub 2017 Feb 16.

Center for Molecular Biodiversity Research, Zoological Research Museum Alexander Koenig, Adenauerallee 160, Bonn, 53113, Germany.

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http://dx.doi.org/10.1186/s12859-017-1529-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5312442PMC
February 2017

Phylogenetic Origin and Diversification of RNAi Pathway Genes in Insects.

Genome Biol Evol 2016 12;8(12):3784-3793

Centre for Molecular Biodiversity Research, Zoological Research Museum Alexander Koenig, Bonn, Germany.

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http://dx.doi.org/10.1093/gbe/evw281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5521735PMC
December 2016

Evolution of neuropeptides in non-pterygote hexapods.

BMC Evol Biol 2016 Feb 29;16:51. Epub 2016 Feb 29.

Institute for Zoology, Functional Peptidomics Group, University of Cologne, D-50674, Cologne, Germany.

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http://dx.doi.org/10.1186/s12862-016-0621-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770511PMC
February 2016

NAC selectively inhibit cancer telomerase activity: A higher redox homeostasis threshold exists in cancer cells.

Redox Biol 2016 08 8;8:91-7. Epub 2015 Dec 8.

Department of Biochemistry and Molecular Biology, Shanghai Medical College of Fudan University, Free Radical Regulation and Application Research Center of Fudan University, Shanghai 200032, People's Republic of China. Electronic address:

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http://dx.doi.org/10.1016/j.redox.2015.12.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5022045PMC
August 2016

Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis.

Mol Ecol Resour 2016 Mar 21;16(2):470-9. Epub 2015 Oct 21.

China National GeneBank-Shenzhen, BGI-Shenzhen, Shenzhen, Guangdong Province, 518083, China.

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http://dx.doi.org/10.1111/1755-0998.12472DOI Listing
March 2016

High-throughput monitoring of wild bee diversity and abundance via mitogenomics.

Methods Ecol Evol 2015 Sep 6;6(9):1034-1043. Epub 2015 Jul 6.

State Key Laboratory of Genetic Resources and EvolutionKunming Institute of ZoologyChinese Academy of Sciences, KunmingYunnan650223China; School of Biological SciencesUniversity of East AngliaNorwich Research ParkNorwichNorfolkNR47TJUK.

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http://dx.doi.org/10.1111/2041-210X.12416DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111398PMC
September 2015

Phylogenomics resolves the timing and pattern of insect evolution.

Science 2014 11 6;346(6210):763-7. Epub 2014 Nov 6.

China National GeneBank, BGI-Shenzhen, China. BGI-Shenzhen, China.

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https://datadryad.org/bitstream/handle/10255/dryad.71701/REA
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http://www.sciencemag.org/cgi/doi/10.1126/science.1257570
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http://dx.doi.org/10.1126/science.1257570DOI Listing
November 2014

Multiplex sequencing of pooled mitochondrial genomes-a crucial step toward biodiversity analysis using mito-metagenomics.

Nucleic Acids Res 2014 Dec 7;42(22):e166. Epub 2014 Oct 7.

China National GeneBank, BGI-Shenzhen, Beishan Road, Beishan Industrial Zone, Yantian District, Shenzhen, Guangdong Province 518083, China

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http://dx.doi.org/10.1093/nar/gku917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4267667PMC
December 2014

Identification and distribution of SIFamide in the nervous system of the desert locust Schistocerca gregaria.

J Comp Neurol 2015 Jan;523(1):108-25

Faculty of Biology, Animal Physiology, Philipps-University Marburg, 35032, Marburg, Germany.

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http://dx.doi.org/10.1002/cne.23671DOI Listing
January 2015

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

Bioinformatics 2014 Jun 13;30(12):1660-6. Epub 2014 Feb 13.

School of Bioscience and Bioengineering, South China University of Technology 510006, Guangzhou, China, BGI-Shenzhen, Shenzhen 518083, China, HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory and Department of Computer Science, University of Hong Kong, Pokfulam, Hong Kong, Institute of Biomedical Engineering, XiangYa School of Medicine, Central South University, Changsha 410008, China, BGI-tech, BGI-Shenzhen, Shenzhen 518083, China, Department of Medicine, University of Alberta, Edmonton, AB T6G 2E1, Canada, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China, Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada, The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen DK-2200, Denmark, Department of Biology, University of Copenhagen, Copenhagen DK-2200, Denmark and Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi ArabiaSchool of Bioscience and Bioengineering, South China University of Technology 510006, Guangzhou, China, BGI-Shenzhen, Shenzhen 518083, China, HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory and Department of Computer Science, University of Hong Kong, Pokfulam, Hong Kong, Institute of Biomedical Engineering, XiangYa School of Medicine, Central South University, Changsha 410008, China, BGI-tech, BGI-Shenzhen, Shenzhen 518083, China, Department of Medicine, University of Alberta, Edmonton, AB T6G 2E1, Canada, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China, Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada, The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen DK-2200, Denmark, Department of Biology, University of Copenhagen, Copenhagen DK-2200, Denmark and Princess Al Jawha

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http://dx.doi.org/10.1093/bioinformatics/btu077DOI Listing
June 2014

[Molecular simulation research on aggregation of insulin].

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi 2013 Oct;30(5):936-41

Department of Biochemistry and Molecular Biology, Shanghai Medical College, Fudan University, Shanghai 200032, China.

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October 2013

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification.

Gigascience 2013 Mar 27;2(1). Epub 2013 Mar 27.

BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, Guangdong Province 518083, China.

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http://dx.doi.org/10.1186/2047-217X-2-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637469PMC
March 2013