Shang Yi

Shang Yi

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Shang Yi

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A structural and data-driven approach to engineering a plant cytochrome P450 enzyme.

Sci China Life Sci 2019 Jul 21;62(7):873-882. Epub 2019 May 21.

The CAAS-YNNU-YINMORE Joint Academy of Potato Science, Yunnan Normal University, Yunnan, 650500, China.

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http://link.springer.com/10.1007/s11427-019-9538-3
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http://dx.doi.org/10.1007/s11427-019-9538-3DOI Listing
July 2019

PSICA: a fast and accurate web service for protein model quality analysis.

Nucleic Acids Res 2019 Jul;47(W1):W443-W450

Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA.

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http://dx.doi.org/10.1093/nar/gkz402DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602450PMC
July 2019

A deep dense inception network for protein beta-turn prediction.

Proteins 2019 Jul 11. Epub 2019 Jul 11.

Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri.

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http://dx.doi.org/10.1002/prot.25780DOI Listing
July 2019

Global trends and future prospects of e-waste research: a bibliometric analysis.

Environ Sci Pollut Res Int 2019 Jun 29;26(17):17809-17820. Epub 2019 Apr 29.

Evidence-Based Medicine Center, School of Basic Medical Sciences, Lanzhou University, No.199, Donggang West Road, Lanzhou City, 730000, Gansu Province, China.

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http://dx.doi.org/10.1007/s11356-019-05071-8DOI Listing
June 2019

Physical organization of repetitive sequences and chromosome diversity of barley revealed by fluorescence in situ hybridization (FISH).

Genome 2019 May 1;62(5):329-339. Epub 2019 Apr 1.

a National Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China.

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http://dx.doi.org/10.1139/gen-2018-0182DOI Listing
May 2019

Microarray-based identification of genes associated with prognosis and drug resistance in ovarian cancer.

J Cell Biochem 2019 Apr 18;120(4):6057-6070. Epub 2018 Oct 18.

Key Laboratory of Longevity and Ageing-Related Disease of Chinese Ministry of Education, Centre for Translational Medicine and School of Preclinical Medicine, Guangxi Medical University, Nanning, Guangxi, China.

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http://dx.doi.org/10.1002/jcb.27892DOI Listing
April 2019

Mutational landscape of T-cell lymphoma in mice lacking the DNA mismatch repair gene Mlh1: no synergism with ionizing radiation.

Carcinogenesis 2019 Apr;40(2):216-224

Department of Radiation Effects Research, National Institute of Radiological Sciences (NIRS), National Institutes for Quantum and Radiological Science and Technology (QST), Chiba, Japan.

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http://dx.doi.org/10.1093/carcin/bgz013DOI Listing
April 2019

Effect of timing of umbilical cord clamping on maternal and neonatal outcomes: A protocol for systematic review and network meta-analysis.

Medicine (Baltimore) 2019 Apr;98(16):e15283

Department of Nursing, The First Hospital of Lanzhou University, Gansu Province, China.

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http://dx.doi.org/10.1097/MD.0000000000015283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494379PMC
April 2019

The genetic basis of inbreeding depression in potato.

Nat Genet 2019 03 14;51(3):374-378. Epub 2019 Jan 14.

Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.

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http://www.nature.com/articles/s41588-018-0319-1
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http://dx.doi.org/10.1038/s41588-018-0319-1DOI Listing
March 2019

Comparison of efficacy and safety of different fixation devices for anterior cruciate ligament reconstruction: A Bayesian network meta-analysis protocol.

Medicine (Baltimore) 2019 Mar;98(12):e14911

Department of Orthopaedics, First Hospital of Lanzhou University, Lanzhou, China.

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http://dx.doi.org/10.1097/MD.0000000000014911DOI Listing
March 2019

Kinetics of cytokine mRNA and protein expression by plastic adherent cells in the thymus after split-dose irradiation.

Cytokine 2019 Feb 19;114:92-97. Epub 2018 Nov 19.

Division of Molecular Medicine, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.cyto.2018.11.006DOI Listing
February 2019

Comparison of the effectiveness of different umbilical cord care in infants: A protocol for systematic review and network meta-analysis.

Authors:
Yi Shang Yue Sun

Medicine (Baltimore) 2019 Feb;98(6):e14440

School of Nursing, Lanzhou University, Lanzhou City, Gansu Province, China.

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http://dx.doi.org/10.1097/MD.0000000000014440DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380742PMC
February 2019

Multi-omics data-driven investigations of metabolic diversity of plant triterpenoids.

Plant J 2019 Jan 3;97(1):101-111. Epub 2018 Dec 3.

Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, China.

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http://doi.wiley.com/10.1111/tpj.14132
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http://dx.doi.org/10.1111/tpj.14132DOI Listing
January 2019

Two novel pathogenic variants of L1CAM gene in two fetuses with isolated X‑linked hydrocephaly: A case report.

Mol Med Rep 2018 Dec 24;18(6):5760-5764. Epub 2018 Oct 24.

Genetic and Metabolic Central Laboratory, Guangxi Maternal and Child Health Hospital, Nanning, Guangxi 530023, P.R. China.

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http://www.spandidos-publications.com/10.3892/mmr.2018.9583
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http://dx.doi.org/10.3892/mmr.2018.9583DOI Listing
December 2018

Two New Heuristic Methods for Protein Model Quality Assessment.

IEEE/ACM Trans Comput Biol Bioinform 2018 Nov 9. Epub 2018 Nov 9.

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https://ieeexplore.ieee.org/document/8528889/
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http://dx.doi.org/10.1109/TCBB.2018.2880202DOI Listing
November 2018

QTL Mapping Reveals the Relationship between Pasting Properties and Malt Extract in Barley.

Int J Mol Sci 2018 Nov 12;19(11). Epub 2018 Nov 12.

Tasmanian Institute of Agriculture, University of Tasmania, Launceston, Tasmania 6250, Australia.

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http://www.mdpi.com/1422-0067/19/11/3559
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http://dx.doi.org/10.3390/ijms19113559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6275068PMC
November 2018

Improving Protein Gamma-Turn Prediction Using Inception Capsule Networks.

Sci Rep 2018 Oct 24;8(1):15741. Epub 2018 Oct 24.

Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, 65211, USA.

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http://www.nature.com/articles/s41598-018-34114-2
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http://dx.doi.org/10.1038/s41598-018-34114-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6200818PMC
October 2018

Novel mutations in four cases of riboflavin responsive multiple acyl-CoA dehydrogenase deficiency.

Mol Genet Metab Rep 2018 Sep 11;16:15-19. Epub 2018 Jun 11.

Genetic and Metabolic Central Laboratory, Maternal and Child Health Hospital of Guangxi Zhuang Autonomous Region, Nanning 530003, People's Republic of China.

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http://dx.doi.org/10.1016/j.ymgmr.2018.05.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031868PMC
September 2018

Murine typhus associated abducens nerve palsy.

Kaohsiung J Med Sci 2018 09 2;34(9):537-538. Epub 2018 Mar 2.

College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan; Infection Control Office and Department of Internal Medicine, Kaohsiung Municipal Ta-Tung Hospital, Kaohsiung Medical University, Kaohsiung, Taiwan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S1607551X173073
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http://dx.doi.org/10.1016/j.kjms.2018.02.006DOI Listing
September 2018

Characterization of a Large Novel α-Globin Gene Cluster Deletion Causing α-Thalassemia in a Chinese Family.

Hemoglobin 2017 Jul - Nov;41(4-6):297-299. Epub 2017 Nov 21.

a Prenatal Diagnostic Center , Guangxi Zhuang Autonomous Region Women and Children Care Hospital , Nanning , Guangxi Zhuang Autonomous Region , People's Republic of China.

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http://dx.doi.org/10.1080/03630269.2017.1366919DOI Listing
August 2018

The Cell Research Trends of Asthma: A Stem Frequency Analysis of the Literature.

J Healthc Eng 2018 23;2018:9363820. Epub 2018 Aug 23.

School of Basic Medical Sciences, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.

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https://www.hindawi.com/journals/jhe/2018/9363820/
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http://dx.doi.org/10.1155/2018/9363820DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6126072PMC
August 2018

Insights into the function of opioid receptors from molecular dynamics simulations of available crystal structures.

Br J Pharmacol 2018 07 12;175(14):2834-2845. Epub 2017 Apr 12.

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.

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http://dx.doi.org/10.1111/bph.13774DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6016634PMC
July 2018

Shipping emission forecasts and cost-benefit analysis of China ports and key regions' control.

Environ Pollut 2018 May;236:49-59

State Key Joint Laboratory of ESPC, School of Environment, Tsinghua University, Beijing 100084, China; State Environmental Protection Key Laboratory of Sources and Control of Air Pollution Complex, Beijing 100084, China.

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http://dx.doi.org/10.1016/j.envpol.2018.01.018DOI Listing
May 2018

Molecular characterization of α- and β-thalassemia in the Yulin region of Southern China.

Gene 2018 May 23;655:61-64. Epub 2018 Feb 23.

Prenatal Diagnostic Center, Guangxi Zhuang Autonomous Region Women and Children Care Hospital, Nanning, Guangxi, PR China; Prenatal Diagnostic Center, Yulin Women and Children Health Care Hospital, Yulin, Guangxi, PR China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03781119183020
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http://dx.doi.org/10.1016/j.gene.2018.02.058DOI Listing
May 2018

MUFOLD-SS: New deep inception-inside-inception networks for protein secondary structure prediction.

Proteins 2018 05 12;86(5):592-598. Epub 2018 Mar 12.

Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri.

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http://dx.doi.org/10.1002/prot.25487DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120586PMC
May 2018

The prevalence and molecular characterization of (δβ) -thalassemia and hereditary persistence of fetal hemoglobin in the Chinese Zhuang population.

J Clin Lab Anal 2018 Mar 1;32(3). Epub 2017 Aug 1.

Prenatal Diagnosis Center, Guangxi Zhuang Autonomous Region Women and Children Care Hospital, Nanning, China.

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http://dx.doi.org/10.1002/jcla.22304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888142PMC
March 2018

New Deep Learning Methods for Protein Loop Modeling.

IEEE/ACM Trans Comput Biol Bioinform 2019 Mar-Apr;16(2):596-606. Epub 2017 Dec 18.

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http://dx.doi.org/10.1109/TCBB.2017.2784434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580050PMC
December 2017

Effects of microencapsulated Lactobacillus plantarum LIP-1 on the gut microbiota of hyperlipidaemic rats.

Br J Nutr 2017 Oct;118(7):481-492

Key Laboratory of Dairy Biotechnology and Engineering, Education Ministry of P. R. China, Key Laboratory of Dairy Products Processing, Ministry of Agriculture, P. R. China, Department of Food Science and Engineering,Inner Mongolia Agricultural University,Hohhot, 010018,People's Republic of China.

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http://dx.doi.org/10.1017/S0007114517002380DOI Listing
October 2017

Radiation Exposure Enhances Hepatocyte Proliferation in Neonatal Mice but not in Adult Mice.

Radiat Res 2017 08 5;188(2):235-241. Epub 2017 Jun 5.

a   Department of Radiation Effects Research, National Institute of Radiological Sciences, National Institutes for Quantum and Radiological Science and Technology, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555, Japan.

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http://dx.doi.org/10.1667/RR14563.1DOI Listing
August 2017

Prevalence and genetic analysis of α- and β-thalassemia in Baise region, a multi-ethnic region in southern China.

Gene 2017 Jul 10;619:71-75. Epub 2016 Feb 10.

Prenatal diagnostic center, Guangxi Zhuang Autonomous Region Women and Children Care Hospital, Nanning, Guangxi, PR China; Prenatal diagnostic center, Baise Women and Children Care Hospital, Baise, Guangxi, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2016.02.014DOI Listing
July 2017

Developmentally Regulated Glucosylation of Bitter Triterpenoid in Cucumber by the UDP-Glucosyltransferase UGT73AM3.

Mol Plant 2017 07 2;10(7):1000-1003. Epub 2017 Mar 2.

Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Science, Shenzhen 518124, China. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2017.02.005DOI Listing
July 2017

Salmon nasal cartilage proteoglycan enhances growth of normal human dermal fibroblast through Erk1/2 phosphorylation.

Biosci Biotechnol Biochem 2017 Jul 2;81(7):1379-1385. Epub 2017 May 2.

a Aomori Prefectural Industrial Technology Research Center , Hirosaki Industrial Research Institute , Hirosaki , Japan.

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http://dx.doi.org/10.1080/09168451.2017.1318695DOI Listing
July 2017

The Genome of Medicinal Plant Macleaya cordata Provides New Insights into Benzylisoquinoline Alkaloids Metabolism.

Mol Plant 2017 07 26;10(7):975-989. Epub 2017 May 26.

National and Local Union Engineering Research Center of Veterinary Herbal Medicine Resource and Initiative, Hunan Agricultural University, Changsha 410128, China; Hunan Co-Innovation Center for Utilization of Botanical Functional Ingredients, Hunan Agricultural University, Changsha 410128, China; Horticulture and Landscape College, Hunan Agricultural University, Changsha 410128, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S16742052173013
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http://dx.doi.org/10.1016/j.molp.2017.05.007DOI Listing
July 2017

Rapid isolation of murine primary hepatocytes for chromosomal analysis.

In Vitro Cell Dev Biol Anim 2017 May 2;53(5):474-478. Epub 2017 Feb 2.

Institute of Radiation Emergency Medicine, Hirosaki University, 66-1 Hon-cho, Hirosaki, 036-8564, Japan.

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http://dx.doi.org/10.1007/s11626-017-0132-7DOI Listing
May 2017

The association between four SNPs (rs7482144, rs4671393, rs28384513 and rs4895441) and fetal hemoglobin levels in Chinese Zhuang β-thalassemia intermedia patients.

Blood Cells Mol Dis 2017 03 25;63:52-57. Epub 2017 Jan 25.

Guangxi birth defects prevention and Control Research Institute, Guangxi Zhuang Autonomous Region Women and Children Health Care Hospital, Nanning, Guangxi, PR China.. Electronic address:

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http://dx.doi.org/10.1016/j.bcmd.2017.01.011DOI Listing
March 2017

Gene Deletion in Barley Mediated by LTR-retrotransposon BARE.

Sci Rep 2017 03 2;7:43766. Epub 2017 Mar 2.

Department of Genetics and Cell Biology, Yangtze University, Jingzhou, Hubei 434023, China.

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http://dx.doi.org/10.1038/srep43766DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333098PMC
March 2017

αIIbβ3 binding to a fibrinogen fragment lacking the γ-chain dodecapeptide is activation dependent and EDTA inducible.

Blood Adv 2017 Feb 22;1(7):417-428. Epub 2017 Feb 22.

Allen and Frances Adler Laboratory of Blood and Vascular Biology, The Rockefeller University, New York, NY.

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http://dx.doi.org/10.1182/bloodadvances.2017004689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738983PMC
February 2017

A Novel α2-Globin Gene Mutation: Hb Debao [α31(B12)Arg→Trp; HBA2: c.94A>T].

Hemoglobin 2017 Jan 2;41(1):65-67. Epub 2017 Apr 2.

a Prenatal Diagnosis Center , Guangxi Zhuang Autonomous Region Women and Children Care Hospital , Nanning , PR China.

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http://dx.doi.org/10.1080/03630269.2017.1289102DOI Listing
January 2017

A Novel Mutation of the α2-Globin Gene Causing α-Thalassemia: Hb Nanning (HBA2: c.369_370delinsGA).

Hemoglobin 2017 Jan 11;41(1):56-58. Epub 2017 Apr 11.

a Prenatal Diagnosis Center , Guangxi Zhuang Autonomous Region Women and Children Care Hospital , Nanning , People's Republic of China.

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http://dx.doi.org/10.1080/03630269.2017.1302950DOI Listing
January 2017

Complex Interaction of Hb Q-Thailand with α- and β-Thalassemia in a Chinese Family.

Hemoglobin 2017 Jan 5;41(1):68-72. Epub 2017 May 5.

a Prenatal Diagnostic Center , Guangxi Zhuang Autonomous Region Women and Children Care Hospital , Nanning , Guangxi , People's Republic of China.

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http://dx.doi.org/10.1080/03630269.2017.1295985DOI Listing
January 2017

Convergence and divergence of bitterness biosynthesis and regulation in Cucurbitaceae.

Nat Plants 2016 11 28;2:16183. Epub 2016 Nov 28.

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China.

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http://www.nature.com/articles/nplants2016183
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http://dx.doi.org/10.1038/nplants.2016.183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449191PMC
November 2016

First Description of a β-Thalassemia Mutation, -86 (C > G) (HBB: c.-136C > G), in a Chinese Family.

Hemoglobin 2015 13;39(6):448-50. Epub 2015 Aug 13.

a Prenatal Diagnosis Center, Guangxi Zhuang Autonomous Region Women & Children Care Hospital , Nanning , Guangxi , People's Republic of China.

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http://dx.doi.org/10.3109/03630269.2015.1070734DOI Listing
August 2016

Identification of a Novel β-Globin Mutation (HBB: C.189_195delTCATGGC) in a Chinese Family.

Hemoglobin 2016 Aug;40(4):277-9

a Prenatal Diagnosis Center, Guangxi Zhuang Autonomous Region Women and Children Care Hospital , Nanning , People's Republic of China.

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http://dx.doi.org/10.1080/03630269.2016.1200073DOI Listing
August 2016

A novel de novo microdeletion at 17q11.2 adjacent to NF1 gene associated with developmental delay, short stature, microcephaly and dysmorphic features.

Mol Cytogenet 2016 31;9:41. Epub 2016 May 31.

Department of Genetic and Metabolic Central Laboratory, Guangxi Maternal and Child Health Hospital, No. 59, Xiangzhu Road, Nanning, China ; Department of Laboratory Medicine, Boston Children's Hospital, 300 Longwood Avenue, Boston, MA 02115 USA.

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http://dx.doi.org/10.1186/s13039-016-0251-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886423PMC
June 2016

A Multi-stage Carcinogenesis Model to Investigate Caloric Restriction as a Potential Tool for Post-irradiation Mitigation of Cancer Risk.

J Cancer Prev 2016 Jun 30;21(2):115-20. Epub 2016 Jun 30.

Department of Radiation Effects Research, National Institute of Radiological Sciences, Chiba, Japan.

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http://dx.doi.org/10.15430/JCP.2016.21.2.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933436PMC
June 2016

Preparation of ultrasound microbubbles crosslinked to albumin nanoparticles packaged with tissue-type plasminogen activator gene plasmid and method of in vivo transfection.

J Exp Pharmacol 2011 24;3:35-41. Epub 2011 Mar 24.

Department of Pathology, Shenzhen Sun Yat-Sen Cardiovascular Hospital, ShenZhen, GuangDong Province, People's Republic of China.

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http://dx.doi.org/10.2147/JEP.S17178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863304PMC
May 2016

Proposed Mode of Binding and Action of Positive Allosteric Modulators at Opioid Receptors.

ACS Chem Biol 2016 05 17;11(5):1220-9. Epub 2016 Feb 17.

Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai , New York, New York 10029, United States.

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http://dx.doi.org/10.1021/acschembio.5b00712DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950826PMC
May 2016

de novo interstitial deletions at the 11q23.3-q24.2 region.

Mol Cytogenet 2016 5;9:39. Epub 2016 May 5.

Department of Genetic and Metabolic Central Laboratory, Guangxi Maternal and Child Health Hospital, No59 Xiangzhu Road, Nanning, China ; Department of Laboratory Medicine, Boston Children's Hospital, 300 Longwood Avenue, Boston, MA 02115 USA.

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http://dx.doi.org/10.1186/s13039-016-0247-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858824PMC
May 2016

First Detection of a Splice Site β-Thalassemia Mutation, IVS-I-6 (T > C) (HBB: c.92 + 6T > C) in a Chinese Family.

Hemoglobin 2015 9;39(3):207-8. Epub 2015 Apr 9.

Prenatal Diagnosis Center, Guangxi Zhuang Autonomous Region Women and Children Care Hospital , Nanning , People's Republic of China.

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http://dx.doi.org/10.3109/03630269.2015.1027826DOI Listing
March 2016

Thyroglobulin gene mutations in Chinese patients with congenital hypothyroidism.

Mol Cell Endocrinol 2016 Mar 8;423:60-6. Epub 2016 Jan 8.

Genetic and Metabolic Central Laboratory, Guangxi Maternal and Child Health Hospital, Nanning, Guangxi, PR China; Shanghai Children's Medical Center, Shanghai Jiaotong University School of Medicine, Shanghai, PR China; Department of Laboratory Medicine, Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA, United States; Claritas Genomics, Cambridge, MA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.mce.2016.01.007DOI Listing
March 2016

Characterisation of aroma profiles of commercial sufus by odour activity value, gas chromatography-olfactometry, aroma recombination and omission studies.

Nat Prod Res 2015 19;29(21):2007-12. Epub 2015 Mar 19.

a Department of Perfume and Aroma Technology , School of Perfume and Aroma Technology, Shanghai Institute of Technology , Haiquan Road No. 100, Shanghai , SC 201400 , P.R. China.

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http://dx.doi.org/10.1080/14786419.2015.1023200DOI Listing
December 2015

Molecular characterization and functional analysis of barley semi-dwarf mutant Riso no. 9265.

BMC Genomics 2015 Nov 14;16:927. Epub 2015 Nov 14.

Institute of Crop Science, Zhejiang University, Hangzhou, 310058, China.

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http://dx.doi.org/10.1186/s12864-015-2116-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4647591PMC
November 2015

PAX8 pathogenic variants in Chinese patients with congenital hypothyroidism.

Clin Chim Acta 2015 Oct 8;450:322-6. Epub 2015 Sep 8.

Department of Genetic Metabolism, Children's Hospital, Maternal and Child Health Hospital of Guangxi Zhuang Autonomous Region, Nanning 530003, People's Republic of China; GuangXi Center for Birth Defects Research and Prevention, Nanning 530003, People's Republic of China. Electronic address:

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http://dx.doi.org/10.1016/j.cca.2015.09.008DOI Listing
October 2015

Opioid receptors: Structural and mechanistic insights into pharmacology and signaling.

Eur J Pharmacol 2015 Sep 14;763(Pt B):206-13. Epub 2015 May 14.

Icahn School of Medicine at Mount Sinai, Department of Structural and Chemical Biology, One Gustave, L. Levy Place, Box 1677, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ejphar.2015.05.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4584181PMC
September 2015

The effect of age at exposure on the inactivating mechanisms and relative contributions of key tumor suppressor genes in radiation-induced mouse T-cell lymphomas.

Mutat Res 2015 Sep 10;779:58-67. Epub 2015 Jun 10.

Radiobiology for Children's Health Program, Research Center for Radiation Protection, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555, Japan; Radiation Effect Accumulation and Prevention Project, Fukushima Project Headquarters, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555, Japan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00275107153001
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http://dx.doi.org/10.1016/j.mrfmmm.2015.06.004DOI Listing
September 2015

Ligand-Based Discovery of a New Scaffold for Allosteric Modulation of the μ-Opioid Receptor.

J Chem Inf Model 2015 Sep 15;55(9):1836-43. Epub 2015 Sep 15.

Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai , New York, New York 10029, United States.

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http://dx.doi.org/10.1021/acs.jcim.5b00388DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4703110PMC
September 2015

First Description of a β-Thalassemia Mutation, -86 (C > G) (HBB: c.-136C > G), in a Chinese Family.

Hemoglobin 2015 Aug 13:1-3. Epub 2015 Aug 13.

Prenatal Diagnosis Center, Guangxi Zhuang Autonomous Region Women & Children Care Hospital , Nanning, Guangxi , People's Republic of China.

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August 2015

BitMapper: an efficient all-mapper based on bit-vector computing.

BMC Bioinformatics 2015 Jun 11;16:192. Epub 2015 Jun 11.

Department of Computer Science, University of Missouri-Columbia, Columbia MO, 65203, USA.

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http://dx.doi.org/10.1186/s12859-015-0626-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462005PMC
June 2015

Mapping a major QTL for malt extract of barley from a cross between TX9425 × Naso Nijo.

Theor Appl Genet 2015 May 15;128(5):943-52. Epub 2015 Mar 15.

Institute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.

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http://dx.doi.org/10.1007/s00122-015-2481-5DOI Listing
May 2015

A Space-Bounded Anytime Algorithm for the Multiple Longest Common Subsequence Problem.

IEEE Trans Knowl Data Eng 2014 Nov;26(11):2599-2609

Key Laboratory on High Performance Computing, Anhui Province and the School of Computer Science, University of Science and Technology of China, Heifei, Anhui, China.

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http://dx.doi.org/10.1109/TKDE.2014.2304464DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231498PMC
November 2014

Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber.

Science 2014 Nov;346(6213):1084-8

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China. Agricultural Genomic Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518124, China.

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http://dx.doi.org/10.1126/science.1259215DOI Listing
November 2014

A new QTL for plant height in barley (Hordeum vulgare L.) showing no negative effects on grain yield.

PLoS One 2014 28;9(2):e90144. Epub 2014 Feb 28.

Tasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, Kings Meadows, Tasmania, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0090144PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3938599PMC
October 2014

RUC-4: a novel αIIbβ3 antagonist for prehospital therapy of myocardial infarction.

Arterioscler Thromb Vasc Biol 2014 Oct 21;34(10):2321-9. Epub 2014 Aug 21.

From the Allen and Frances Adler Laboratory of Blood and Vascular Biology, Rockefeller University, New York, NY (J.L., S.V., B.S.C.); Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY (Y.S., A.N., M.F.); NIH Chemical Genomics Center, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Bethesda, MD (J.-k.J., C.J.T.); Ekam Imaging, Boston, MA (M.N.); and Departments of Pediatrics and Pathology, Columbia University Medical Center, New York, NY (T.G.D.).

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http://dx.doi.org/10.1161/ATVBAHA.114.303724DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180209PMC
October 2014

Cancer prevention by adult-onset calorie restriction after infant exposure to ionizing radiation in B6C3F1 male mice.

Int J Cancer 2014 Sep 11;135(5):1038-47. Epub 2014 Feb 11.

Radiobiology for Children's Health Program, National Institute of Radiological Sciences, Inage-ku, Chiba, Japan.

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http://doi.wiley.com/10.1002/ijc.28751
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http://dx.doi.org/10.1002/ijc.28751DOI Listing
September 2014

Mechanistic insights into the allosteric modulation of opioid receptors by sodium ions.

Biochemistry 2014 Aug 29;53(31):5140-9. Epub 2014 Jul 29.

Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai , New York, New York 10029, United States.

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http://dx.doi.org/10.1021/bi5006915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131901PMC
August 2014

DL-PRO: A Novel Deep Learning Method for Protein Model Quality Assessment.

Proc Int Jt Conf Neural Netw 2014 Jul;2014:2071-2078

Department of Computer Science, University of Missouri, Columbia, MO 65211 USA. Christopher S. Bond Life Science Center, University of Missouri at Columbia.

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http://dx.doi.org/10.1109/IJCNN.2014.6889891DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226404PMC
July 2014

Radical coupling for directed C-C/C-S bond formation in the reaction of Cp*IrS2C2B10H10 with 1-azido-3-nitrobenzene.

Dalton Trans 2014 Apr;43(13):4962-8

State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210093, China.

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http://dx.doi.org/10.1039/c3dt52308jDOI Listing
April 2014

Discrimination of cherry wines based on their sensory properties and aromatic fingerprinting using HS-SPME-GC-MS and multivariate analysis.

J Food Sci 2014 Mar 24;79(3):C284-94. Epub 2014 Feb 24.

School of Perfume and Aroma Technology, Shanghai Inst. of Technology, Shanghai, China.

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http://dx.doi.org/10.1111/1750-3841.12362DOI Listing
March 2014

Hybrid sponge comprised of galactosylated chitosan and hyaluronic acid mediates the co-culture of hepatocytes and endothelial cells.

J Biosci Bioeng 2014 Jan 27;117(1):99-106. Epub 2013 Jul 27.

Department of Biomolecular Engineering, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 B51, Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8503, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jbiosc.2013.06.015DOI Listing
January 2014

Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus.

PLoS Genet 2014 Jan 9;10(1):e1004078. Epub 2014 Jan 9.

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Sino-Dutch Joint Lab of Horticultural Genomics, Beijing, China ; Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.

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http://dx.doi.org/10.1371/journal.pgen.1004078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3886924PMC
January 2014

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity.

Nat Genet 2013 Dec 20;45(12):1510-5. Epub 2013 Oct 20.

1] Institute of Vegetables and Flowers of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing, China. [2].

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http://dx.doi.org/10.1038/ng.2801DOI Listing
December 2013

HIVID: an efficient method to detect HBV integration using low coverage sequencing.

Genomics 2013 Oct 15;102(4):338-44. Epub 2013 Jul 15.

BGI-Shenzhen, Shenzhen, 518083, China; School of Bioscience and Bioengineering, South China University of Technology, China.

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http://dx.doi.org/10.1016/j.ygeno.2013.07.002DOI Listing
October 2013

NEW MDS AND CLUSTERING BASED ALGORITHMS FOR PROTEIN MODEL QUALITY ASSESSMENT AND SELECTION.

Int J Artif Intell Tools 2013 Oct;22(5):1360006

Computer Science Department, University of Missouri Columbia, MO 65211, USA.

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http://dx.doi.org/10.1142/S0218213013600063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4010235PMC
October 2013

Genetic diversity and population structure of cucumber (Cucumis sativus L.).

PLoS One 2012 12;7(10):e46919. Epub 2012 Oct 12.

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino-Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046919PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3470563PMC
April 2013

Modeling Physiological Data with Deep Belief Networks.

Authors:
Dan Wang Yi Shang

Int J Inf Educ Technol 2013 ;3(5):505-511

Department of Computer Science, University of Missouri, Columbia, MO 65211 USA.

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http://dx.doi.org/10.7763/IJIET.2013.V3.326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4142685PMC
January 2013

Interleukin-9 receptor gene is transcriptionally regulated by nucleolin in T-cell lymphoma cells.

Mol Carcinog 2012 Aug 1;51(8):619-27. Epub 2011 Aug 1.

Experimental Radiobiology for Children's Health Research Group, Research Center for Radiation Protection, National Institute of Radiological Sciences, Inage-ku, Chiba, Japan.

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http://dx.doi.org/10.1002/mc.20834DOI Listing
August 2012

Improving a consensus approach for protein structure selection by removing redundancy.

IEEE/ACM Trans Comput Biol Bioinform 2011 Nov-Dec;8(6):1708-15

Department of Computer Science, University of Missouri, 201 Engineering Building West, Columbia, MO 65211, USA.

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http://dx.doi.org/10.1109/TCBB.2011.75DOI Listing
April 2012

Trp53 activity is repressed in radio-adapted cultured murine limb bud cells.

J Radiat Res 2011 16;52(6):727-34. Epub 2011 Sep 16.

Radiation Effect Mechanisms Research Group, National Institute of Radiological Sciences, Chiba 263-8555, Japan.

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http://dx.doi.org/10.1269/jrr.10092DOI Listing
April 2012

Molecular dynamics applied in drug discovery: the case of HIV-1 protease.

Methods Mol Biol 2012 ;819:527-49

Department of Chemistry, State University of New York, Stony Brook, NY, USA.

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http://dx.doi.org/10.1007/978-1-61779-465-0_31DOI Listing
April 2012

Prediction of protein tertiary structures using MUFOLD.

Methods Mol Biol 2012 ;815:3-13

Department of Computer Science, University of Missouri, Columbia, MO, USA.

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http://dx.doi.org/10.1007/978-1-61779-424-7_1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4365503PMC
March 2012

A multilayer evaluation approach for protein structure prediction and model quality assessment.

Proteins 2011 14;79 Suppl 10:172-84. Epub 2011 Oct 14.

Department of Computer Science, University of Missouri, Columbia, MO, USA.

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http://dx.doi.org/10.1002/prot.23184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226843PMC
December 2011

MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction.

Proteins 2011 14;79 Suppl 10:185-95. Epub 2011 Oct 14.

Department of Computer Science, University of Missouri, Columbia, MO 65211, USA.

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http://doi.wiley.com/10.1002/prot.23185
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http://dx.doi.org/10.1002/prot.23185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3230078PMC
December 2011

A sampling-based method for ranking protein structural models by integrating multiple scores and features.

Curr Protein Pept Sci 2011 Sep;12(6):540-8

College of Computer Science and Technology, Jilin University, Jilin, Changchun 130012, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4368063PMC
September 2011

Gene silencing of Tead3 abrogates radiation-induced adaptive response in cultured mouse limb bud cells.

J Radiat Res 2011 ;52(1):39-46

National Institute of Radiological Sciences, Chiba, Japan.

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http://dx.doi.org/10.1269/jrr.10101DOI Listing
June 2011

[Radiation-induced colorectal cancer: second primary cancer after radiotherapy].

Nihon Rinsho 2011 Apr;69 Suppl 3:126-32

Experimental Radiobiology for Children's Health Research Group, National Institute of Radiological Sciences.

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April 2011

The evolutionary history of PDR in Brachypodium distachyon polyploids.

Mol Biol Rep 2011 Mar 21;38(3):2211-7. Epub 2010 Sep 21.

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University, Nanjing 210095, China.

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http://dx.doi.org/10.1007/s11033-010-0350-5DOI Listing
March 2011

Effects of calorie restriction on the age-dependent accumulation of mutations in the small intestine of lacZ-transgenic mice.

Mech Ageing Dev 2011 Mar 12;132(3):117-22. Epub 2011 Feb 12.

Department of Cell Biology, Graduate School of Medicine, Tohoku University, Aoba-ku, Sendai, Japan.

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http://dx.doi.org/10.1016/j.mad.2011.01.004DOI Listing
March 2011

Improving the description of salt bridge strength and geometry in a Generalized Born model.

J Mol Graph Model 2011 Feb 2;29(5):676-84. Epub 2010 Dec 2.

Graduate Program in Molecular and Cellular Biology, Stony Brook University, Stony Brook, NY 11794, USA.

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http://dx.doi.org/10.1016/j.jmgm.2010.11.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3390179PMC
February 2011

Plasticity in the synaptic number associated with neuropathic pain in the rat spinal dorsal horn: A stereological study.

Neurosci Lett 2010 Dec 19;486(1):24-8. Epub 2010 Sep 19.

Laboratory of Stem Cell and Tissue Engineering, Department of Histology and Embryology, Chongqing Medical University, Chongqing 400016, China.

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http://dx.doi.org/10.1016/j.neulet.2010.09.037DOI Listing
December 2010

X-ray-induced radioresistance against high-LET radiations from accelerated heavy ions in mice.

Radiat Res 2010 Oct;174(4):532-6

Research Center for Radiation Protection, National Institute of Radiological Sciences, Anagawa 4-9-1, Inage-ku, Chiba 263-8555, Japan.

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http://dx.doi.org/10.1667/RR2133.1DOI Listing
October 2010

Complicated biallelic inactivation of Pten in radiation-induced mouse thymic lymphomas.

Mutat Res 2010 Apr 7;686(1-2):30-8. Epub 2010 Jan 7.

Department of Biology, Graduate School of Science, Chiba University, Yayoicho, Inage-ku, Chiba 263-8522, Japan.

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http://dx.doi.org/10.1016/j.mrfmmm.2009.12.011DOI Listing
April 2010

[Preparation of galactosylated hyaluronic acid/chitosan scaffold for liver tissue engineering].

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi 2009 Dec;26(6):1271-5

School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China.

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December 2009