Publications by authors named "Shancen Zhao"

38Publications

Genome-Wide Association Study of Smoking Behavior Traits in a Chinese Han Population.

Front Psychiatry 2020 9;11:564239. Epub 2020 Sep 9.

Joint Institute of Tobacco and Health, Yunnan Academy of Tobacco Science, Kunming, China.

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http://dx.doi.org/10.3389/fpsyt.2020.564239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7509597PMC
September 2020

Major genomic regions responsible for wheat yield and its components as revealed by meta-QTL and genotype-phenotype association analyses.

Planta 2020 Sep 24;252(4):65. Epub 2020 Sep 24.

School of Plant Biology, Faculty of Science and The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia.

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http://dx.doi.org/10.1007/s00425-020-03466-3DOI Listing
September 2020

Construction of a high-density genetic map with whole genome sequencing in Nicotiana tabacum L.

Genomics 2020 03 21;112(2):2028-2033. Epub 2019 Nov 21.

Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan 650021, People's Republic of China. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2019.11.015DOI Listing
March 2020

Probiotic strains improve high-fat diet-induced hypercholesterolemia through modulating gut microbiota in ways different from atorvastatin.

Food Funct 2019 Sep;10(9):6098-6109

BGI-Shenzhen, Shenzhen, 518083, China and Key Laboratory of Genomics, Ministry of Agriculture, BGI-Shenzhen, Shenzhen, 518083, China.

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http://dx.doi.org/10.1039/c9fo00444kDOI Listing
September 2019

Unraveling the genetic architecture of grain size in einkorn wheat through linkage and homology mapping and transcriptomic profiling.

J Exp Bot 2019 09;70(18):4671-4688

State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology/Innovation Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.

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http://dx.doi.org/10.1093/jxb/erz247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6760303PMC
September 2019

Genome structure and evolution of Antirrhinum majus L.

Nat Plants 2019 02 28;5(2):174-183. Epub 2019 Jan 28.

State Key Laboratory of Plant Cell and Chromosome Engineering and National Center of Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

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http://www.nature.com/articles/s41477-018-0349-9
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http://dx.doi.org/10.1038/s41477-018-0349-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6784882PMC
February 2019

Evolution of Disease Defense Genes and Their Regulators in Plants.

Int J Mol Sci 2019 Jan 15;20(2). Epub 2019 Jan 15.

BGI Institute of Applied Agriculture, BGI-Agro, Shenzhen 518083, China.

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http://www.mdpi.com/1422-0067/20/2/335
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http://dx.doi.org/10.3390/ijms20020335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358896PMC
January 2019

Divergence and plasticity shape adaptive potential of the Pacific oyster.

Nat Ecol Evol 2018 11 24;2(11):1751-1760. Epub 2018 Sep 24.

CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.

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http://dx.doi.org/10.1038/s41559-018-0668-2DOI Listing
November 2018

Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis).

Gigascience 2018 10 1;7(10). Epub 2018 Oct 1.

State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, Institute of Gene Science for Bamboo and Rattan Resources, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District Beijing 100102, China.

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http://dx.doi.org/10.1093/gigascience/giy115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6204424PMC
October 2018

The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana).

Gigascience 2018 09 1;7(9). Epub 2018 Sep 1.

State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, Institute of Gene Science for Bamboo and Rattan Resources, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District, Beijing 100102, China.

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https://academic.oup.com/gigascience/article/doi/10.1093/gig
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http://dx.doi.org/10.1093/gigascience/giy097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6117794PMC
September 2018

Metagenomics Biomarkers Selected for Prediction of Three Different Diseases in Chinese Population.

Biomed Res Int 2018 11;2018:2936257. Epub 2018 Jan 11.

Wuhan National Laboratory for Optoelectronics, Key Laboratory of Information Storage System, Huazhong University of Science and Technology, Wuhan, Hubei 430000, China.

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https://www.hindawi.com/journals/bmri/2018/2936257/
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http://dx.doi.org/10.1155/2018/2936257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5820663PMC
September 2018

Molecular phylogeny and dynamic evolution of disease resistance genes in the legume family.

BMC Genomics 2016 05 26;17:402. Epub 2016 May 26.

Centre for Soybean Research, Partner State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, New Territories, Hong Kong.

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http://dx.doi.org/10.1186/s12864-016-2736-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881053PMC
May 2016

BS-SNPer: SNP calling in bisulfite-seq data.

Bioinformatics 2015 Dec 28;31(24):4006-8. Epub 2015 Aug 28.

Department of Biomedicine, Aarhus University, Aarhus, Denmark, BGI Co. Ltd., Shenzhen 518083, China, BioInformatics Research Center (BIRC), Aarhus University, Aarhus 8000, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/btv507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4673977PMC
December 2015

Sequencing consolidates molecular markers with plant breeding practice.

Theor Appl Genet 2015 May 28;128(5):779-95. Epub 2015 Mar 28.

Department of Agriculture and Food Western Australia, 3 Baron-Hay Court, South Perth, 6151, Australia,

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http://dx.doi.org/10.1007/s00122-015-2499-8DOI Listing
May 2015

Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation.

Nat Genet 2013 Jan 16;45(1):67-71. Epub 2012 Dec 16.

Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.

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http://dx.doi.org/10.1038/ng.2494DOI Listing
January 2013

International network of cancer genome projects.

Authors:
Thomas J Hudson Warwick Anderson Axel Artez Anna D Barker Cindy Bell Rosa R Bernabé M K Bhan Fabien Calvo Iiro Eerola Daniela S Gerhard Alan Guttmacher Mark Guyer Fiona M Hemsley Jennifer L Jennings David Kerr Peter Klatt Patrik Kolar Jun Kusada David P Lane Frank Laplace Lu Youyong Gerd Nettekoven Brad Ozenberger Jane Peterson T S Rao Jacques Remacle Alan J Schafer Tatsuhiro Shibata Michael R Stratton Joseph G Vockley Koichi Watanabe Huanming Yang Matthew M F Yuen Bartha M Knoppers Martin Bobrow Anne Cambon-Thomsen Lynn G Dressler Stephanie O M Dyke Yann Joly Kazuto Kato Karen L Kennedy Pilar Nicolás Michael J Parker Emmanuelle Rial-Sebbag Carlos M Romeo-Casabona Kenna M Shaw Susan Wallace Georgia L Wiesner Nikolajs Zeps Peter Lichter Andrew V Biankin Christian Chabannon Lynda Chin Bruno Clément Enrique de Alava Françoise Degos Martin L Ferguson Peter Geary D Neil Hayes Thomas J Hudson Amber L Johns Arek Kasprzyk Hidewaki Nakagawa Robert Penny Miguel A Piris Rajiv Sarin Aldo Scarpa Tatsuhiro Shibata Marc van de Vijver P Andrew Futreal Hiroyuki Aburatani Mónica Bayés David D L Botwell Peter J Campbell Xavier Estivill Daniela S Gerhard Sean M Grimmond Ivo Gut Martin Hirst Carlos López-Otín Partha Majumder Marco Marra John D McPherson Hidewaki Nakagawa Zemin Ning Xose S Puente Yijun Ruan Tatsuhiro Shibata Michael R Stratton Hendrik G Stunnenberg Harold Swerdlow Victor E Velculescu Richard K Wilson Hong H Xue Liu Yang Paul T Spellman Gary D Bader Paul C Boutros Peter J Campbell Paul Flicek Gad Getz Roderic Guigó Guangwu Guo David Haussler Simon Heath Tim J Hubbard Tao Jiang Steven M Jones Qibin Li Nuria López-Bigas Ruibang Luo Lakshmi Muthuswamy B F Francis Ouellette John V Pearson Xose S Puente Victor Quesada Benjamin J Raphael Chris Sander Tatsuhiro Shibata Terence P Speed Lincoln D Stein Joshua M Stuart Jon W Teague Yasushi Totoki Tatsuhiko Tsunoda Alfonso Valencia David A Wheeler Honglong Wu Shancen Zhao Guangyu Zhou Lincoln D Stein Roderic Guigó Tim J Hubbard Yann Joly Steven M Jones Arek Kasprzyk Mark Lathrop Nuria López-Bigas B F Francis Ouellette Paul T Spellman Jon W Teague Gilles Thomas Alfonso Valencia Teruhiko Yoshida Karen L Kennedy Myles Axton Stephanie O M Dyke P Andrew Futreal Daniela S Gerhard Chris Gunter Mark Guyer Thomas J Hudson John D McPherson Linda J Miller Brad Ozenberger Kenna M Shaw Arek Kasprzyk Lincoln D Stein Junjun Zhang Syed A Haider Jianxin Wang Christina K Yung Anthony Cros Anthony Cross Yong Liang Saravanamuttu Gnaneshan Jonathan Guberman Jack Hsu Martin Bobrow Don R C Chalmers Karl W Hasel Yann Joly Terry S H Kaan Karen L Kennedy Bartha M Knoppers William W Lowrance Tohru Masui Pilar Nicolás Emmanuelle Rial-Sebbag Laura Lyman Rodriguez Catherine Vergely Teruhiko Yoshida Sean M Grimmond Andrew V Biankin David D L Bowtell Nicole Cloonan Anna deFazio James R Eshleman Dariush Etemadmoghadam Brooke B Gardiner Brooke A Gardiner James G Kench Aldo Scarpa Robert L Sutherland Margaret A Tempero Nicola J Waddell Peter J Wilson John D McPherson Steve Gallinger Ming-Sound Tsao Patricia A Shaw Gloria M Petersen Debabrata Mukhopadhyay Lynda Chin Ronald A DePinho Sarah Thayer Lakshmi Muthuswamy Kamran Shazand Timothy Beck Michelle Sam Lee Timms Vanessa Ballin Youyong Lu Jiafu Ji Xiuqing Zhang Feng Chen Xueda Hu Guangyu Zhou Qi Yang Geng Tian Lianhai Zhang Xiaofang Xing Xianghong Li Zhenggang Zhu Yingyan Yu Jun Yu Huanming Yang Mark Lathrop Jörg Tost Paul Brennan Ivana Holcatova David Zaridze Alvis Brazma Lars Egevard Egor Prokhortchouk Rosamonde Elizabeth Banks Mathias Uhlén Anne Cambon-Thomsen Juris Viksna Fredrik Ponten Konstantin Skryabin Michael R Stratton P Andrew Futreal Ewan Birney Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Sancha Martin Jorge S Reis-Filho Andrea L Richardson Christos Sotiriou Hendrik G Stunnenberg Giles Thoms Marc van de Vijver Laura van't Veer Fabien Calvo Daniel Birnbaum Hélène Blanche Pascal Boucher Sandrine Boyault Christian Chabannon Ivo Gut Jocelyne D Masson-Jacquemier Mark Lathrop Iris Pauporté Xavier Pivot Anne Vincent-Salomon Eric Tabone Charles Theillet Gilles Thomas Jörg Tost Isabelle Treilleux Fabien Calvo Paulette Bioulac-Sage Bruno Clément Thomas Decaens Françoise Degos Dominique Franco Ivo Gut Marta Gut Simon Heath Mark Lathrop Didier Samuel Gilles Thomas Jessica Zucman-Rossi Peter Lichter Roland Eils Benedikt Brors Jan O Korbel Andrey Korshunov Pablo Landgraf Hans Lehrach Stefan Pfister Bernhard Radlwimmer Guido Reifenberger Michael D Taylor Christof von Kalle Partha P Majumder Rajiv Sarin T S Rao M K Bhan Aldo Scarpa Paolo Pederzoli Rita A Lawlor Massimo Delledonne Alberto Bardelli Andrew V Biankin Sean M Grimmond Thomas Gress David Klimstra Giuseppe Zamboni Tatsuhiro Shibata Yusuke Nakamura Hidewaki Nakagawa Jun Kusada Tatsuhiko Tsunoda Satoru Miyano Hiroyuki Aburatani Kazuto Kato Akihiro Fujimoto Teruhiko Yoshida Elias Campo Carlos López-Otín Xavier Estivill Roderic Guigó Silvia de Sanjosé Miguel A Piris Emili Montserrat Marcos González-Díaz Xose S Puente Pedro Jares Alfonso Valencia Heinz Himmelbauer Heinz Himmelbaue Victor Quesada Silvia Bea Michael R Stratton P Andrew Futreal Peter J Campbell Anne Vincent-Salomon Andrea L Richardson Jorge S Reis-Filho Marc van de Vijver Gilles Thomas Jocelyne D Masson-Jacquemier Samuel Aparicio Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Hendrik G Stunnenberg Laura van't Veer Douglas F Easton Paul T Spellman Sancha Martin Anna D Barker Lynda Chin Francis S Collins Carolyn C Compton Martin L Ferguson Daniela S Gerhard Gad Getz Chris Gunter Alan Guttmacher Mark Guyer D Neil Hayes Eric S Lander Brad Ozenberger Robert Penny Jane Peterson Chris Sander Kenna M Shaw Terence P Speed Paul T Spellman Joseph G Vockley David A Wheeler Richard K Wilson Thomas J Hudson Lynda Chin Bartha M Knoppers Eric S Lander Peter Lichter Lincoln D Stein Michael R Stratton Warwick Anderson Anna D Barker Cindy Bell Martin Bobrow Wylie Burke Francis S Collins Carolyn C Compton Ronald A DePinho Douglas F Easton P Andrew Futreal Daniela S Gerhard Anthony R Green Mark Guyer Stanley R Hamilton Tim J Hubbard Olli P Kallioniemi Karen L Kennedy Timothy J Ley Edison T Liu Youyong Lu Partha Majumder Marco Marra Brad Ozenberger Jane Peterson Alan J Schafer Paul T Spellman Hendrik G Stunnenberg Brandon J Wainwright Richard K Wilson Huanming Yang

Nature 2010 Apr;464(7291):993-8

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http://dx.doi.org/10.1038/nature08987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902243PMC
April 2010

The sequence and de novo assembly of the giant panda genome.

Nature 2010 Jan 13;463(7279):311-7. Epub 2009 Dec 13.

BGI-Shenzhen, Shenzhen 518083, China.

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http://dx.doi.org/10.1038/nature08696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497PMC
January 2010