Publications by authors named "Sevinc Ercan"

30Publications

Condensin action and compaction.

Curr Genet 2019 Apr 25;65(2):407-415. Epub 2018 Oct 25.

Department of Biology, New York University, New York, NY, 10003, USA.

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http://link.springer.com/10.1007/s00294-018-0899-4
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http://dx.doi.org/10.1007/s00294-018-0899-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421088PMC
April 2019

Caenorhabditis elegans Dosage Compensation: Insights into Condensin-Mediated Gene Regulation.

Trends Genet 2018 01 13;34(1):41-53. Epub 2017 Oct 13.

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2017.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741500PMC
January 2018

Cooperation between a hierarchical set of recruitment sites targets the X chromosome for dosage compensation.

Elife 2017 05 30;6. Epub 2017 May 30.

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, United States.

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http://dx.doi.org/10.7554/eLife.23645DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5451215PMC
May 2017

Untangling the Contributions of Sex-Specific Gene Regulation and X-Chromosome Dosage to Sex-Biased Gene Expression in Caenorhabditis elegans.

Genetics 2016 Sep 29;204(1):355-69. Epub 2016 Jun 29.

Department of Biology, Center for Genomics and Systems Biology, New York University, New York 10003

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http://dx.doi.org/10.1534/genetics.116.190298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5012400PMC
September 2016

Developmental Dynamics of X-Chromosome Dosage Compensation by the DCC and H4K20me1 in C. elegans.

PLoS Genet 2015 Dec 7;11(12):e1005698. Epub 2015 Dec 7.

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005698DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671695PMC
December 2015

Mechanisms of x chromosome dosage compensation.

Authors:
Sevinç Ercan

J Genomics 2015 1;3:1-19. Epub 2015 Jan 1.

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.7150/jgen.10404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4303597PMC
January 2015

Comparative analysis of metazoan chromatin organization.

Nature 2014 Aug;512(7515):449-52

1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1038/nature13415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227084PMC
August 2014

Modern techniques for the analysis of chromatin and nuclear organization in C. elegans.

WormBook 2014 Apr 2:1-35. Epub 2014 Apr 2.

Andalusian Center for Developmental Biology (CABD), CSIC/JA/Universidad Pablo de Olavide, Seville, Spain.

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http://dx.doi.org/10.1895/wormbook.1.169.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4781626PMC
April 2014

Regulation of the X chromosomes in Caenorhabditis elegans.

Cold Spring Harb Perspect Biol 2014 Mar 1;6(3). Epub 2014 Mar 1.

Department of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, California 95064.

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http://dx.doi.org/10.1101/cshperspect.a018366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3942922PMC
March 2014

An inverse relationship to germline transcription defines centromeric chromatin in C. elegans.

Nature 2012 Apr 8;484(7395):534-7. Epub 2012 Apr 8.

Ludwig Institute for Cancer Research and Department of Cellular & Molecular Medicine, University of California San Diego, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1038/nature10973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3538161PMC
April 2012

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1126/science.1196914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142569PMC
December 2010

High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans.

Genome Res 2011 Feb 22;21(2):237-44. Epub 2010 Dec 22.

Department of Biology, Carolina Center for the Genome Sciences, University of North Carolina, Chapel Hill, North Carolina 27599-3280, USA.

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http://dx.doi.org/10.1101/gr.115931.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032927PMC
February 2011

The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.

PLoS Genet 2010 Sep 2;6(9):e1001091. Epub 2010 Sep 2.

Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1001091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2932692PMC
September 2010

The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence.

Curr Biol 2009 Nov 22;19(21):1777-87. Epub 2009 Oct 22.

Department of Biology, Carolina Center for Genome Sciences and Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1016/j.cub.2009.09.047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2783177PMC
November 2009

C. elegans dosage compensation: a window into mechanisms of domain-scale gene regulation.

Chromosome Res 2009 ;17(2):215-27

Department of Biology and Carolina Center for the Genome Sciences, CB #3280, 406 Fordham Hall, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599-3280, USA.

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http://dx.doi.org/10.1007/s10577-008-9011-0DOI Listing
June 2009

The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis.

PLoS Genet 2008 Sep 12;4(9):e1000187. Epub 2008 Sep 12.

Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2522285PMC
September 2008

Chromatin proteins do double duty.

Cell 2008 May;133(5):763-5

Department of Biology and Carolina Center for the Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1016/j.cell.2008.05.011DOI Listing
May 2008

X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.

Nat Genet 2007 Mar 11;39(3):403-8. Epub 2007 Feb 11.

Department of Biology and Carolina Center for the Genome Sciences, 202 Fordham Hall, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3280, USA.

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http://www.nature.com/articles/ng1983
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http://dx.doi.org/10.1038/ng1983DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753834PMC
March 2007

New evidence that DNA encodes its packaging.

Nat Genet 2006 Oct;38(10):1104-5

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http://dx.doi.org/10.1038/ng1006-1104DOI Listing
October 2006

Yeast recombination enhancer is stimulated by transcription activation.

Mol Cell Biol 2005 Sep;25(18):7976-87

Stowers Institute for Medical Research, 1000 East 50th St., Kansas City, MO 64110, USA.

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http://mcb.asm.org/cgi/doi/10.1128/MCB.25.18.7976-7987.2005
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http://dx.doi.org/10.1128/MCB.25.18.7976-7987.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1234320PMC
September 2005

Global chromatin structure of 45,000 base pairs of chromosome III in a- and alpha-cell yeast and during mating-type switching.

Mol Cell Biol 2004 Nov;24(22):10026-35

Center for Gene Regulation and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1128/MCB.24.22.10026-10035.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC525486PMC
November 2004

Global nucleosome distribution and the regulation of transcription in yeast.

Genome Biol 2004 30;5(10):243. Epub 2004 Sep 30.

Stowers Institute for Medical Research, 1,000 East 50th Street, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/gb-2004-5-10-243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC545588PMC
July 2005