Sergey Nikolaev

Sergey Nikolaev

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Sergey Nikolaev

Sergey Nikolaev

Publications by authors named "Sergey Nikolaev"

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Giant contribution of the ligand states to the magnetic properties of the CrGeTe monolayer.

Phys Chem Chem Phys 2019 May;21(18):9597-9604

International Centre of Quantum and Molecular Structures, College of Sciences, Shanghai University, 99 Shangda Road, Shanghai 200444, China.

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http://dx.doi.org/10.1039/c9cp01034cDOI Listing
May 2019

Numerical algorithm for morphogen synthesis region identification with indirect image-type measurement data.

J Bioinform Comput Biol 2019 02;17(1):1940002

† Institute of Cytology and Genetics SB RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russian Federation.

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http://dx.doi.org/10.1142/S021972001940002XDOI Listing
February 2019

Magnetism of NaFePO and related polyanionic compounds.

Phys Chem Chem Phys 2018 May;20(19):13497-13507

International Center for Materials Nanoarchitectonics, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan. and Department of Theoretical Physics and Applied Mathematics, Ural Federal University, Mira str. 19, 620002 Ekaterinburg, Russia.

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http://dx.doi.org/10.1039/c8cp01961dDOI Listing
May 2018

Somatic Activating KRAS Mutations in Arteriovenous Malformations of the Brain.

N Engl J Med 2018 04;378(16):1561-1562

Krembil Research Institute, Toronto, ON, Canada

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http://dx.doi.org/10.1056/NEJMc1802190DOI Listing
April 2018

Spin Hall and Spin Swapping Torques in Diffusive Ferromagnets.

Phys Rev Lett 2018 Apr;120(17):176802

Univ. Grenoble Alpes, CNRS, CEA, Grenoble INP, INAC-SPINTEC, 38000 Grenoble, France.

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http://dx.doi.org/10.1103/PhysRevLett.120.176802DOI Listing
April 2018

Circulating tumoral DNA: Preanalytical validation and quality control in a diagnostic laboratory.

Anal Biochem 2018 02 11;542:34-39. Epub 2017 Nov 11.

Molecular and Genomic Diagnostic Laboratory, Service of Medical Genetics, Department of Genetic Medicine, Laboratory Medicine and Pathology, University Hospitals of Geneva, CH-1211 Geneva, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.ab.2017.11.004DOI Listing
February 2018

Somatic Activating KRAS Mutations in Arteriovenous Malformations of the Brain.

N Engl J Med 2018 01 3;378(3):250-261. Epub 2018 Jan 3.

From the Department of Genetic Medicine and Development, University of Geneva Medical School (S.I.N., X.B., S.E.A.), Service of Genetic Medicine, University Hospitals of Geneva (S.I.N., S.E.A.), and iGE3, Institute of Genetics and Genomics of Geneva (S.E.A.) - all in Geneva; the Department of Fundamental Neurobiology, Krembil Research Institute (S.V., M.T., I.R.), Toronto General Hospital Research Institute (E.B., N.K., P.V.D., J.E.F.), the Department of Pathology (T.-R.K.), the Division of Neurosurgery, Department of Surgery (V.M.P., T.K., H.A.-B., T.T., T.V., G.Z., M.T., I.R.), and the Joint Division of Medical Imaging, Department of Medical Imaging (V.M.P., T.K.), Toronto Western Hospital, University Health Network, the Department of Laboratory Medicine and Pathobiology, University of Toronto (E.B., N.K., P.V.D., T.-R.K., J.E.F.), and the Heart and Stroke Richard Lewar Centre of Excellence in Cardiovascular Research (E.B., N.K., P.V.D., J.E.F.) - all in Toronto; the Department of Molecular Medicine, AIV Institute, University of Eastern Finland (S.J., B.R.J., S.S., S.Y.-H., J.F.), and the Hemorrhagic Brain Pathology Research Group, Department of Neurosurgery and NeuroCenter (S.J., B.R.J., S.S., T.R., J.F.), and the Department of Pathology (T.R.), Kuopio University Hospital - all in Kuopio, Finland; and the Cardiovascular Research Institute and the Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston (A.M.H., J.D.W.).

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http://dx.doi.org/10.1056/NEJMoa1709449DOI Listing
January 2018

Human mismatch repair system balances mutation rates between strands by removing more mismatches from the lagging strand.

Genome Res 2017 08 16;27(8):1336-1343. Epub 2017 May 16.

Institute for Information Transmission Problems of the Russian Academy of Sciences (Kharkevich Institute), Moscow 127994, Russia.

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http://dx.doi.org/10.1101/gr.219915.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5538550PMC
August 2017

Mechanical Behavior of Cells within a Cell-Based Model of Wheat Leaf Growth.

Front Plant Sci 2016 15;7:1878. Epub 2016 Dec 15.

Department of Systems Biology, Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of ScienceNovosibirsk, Russia; Chair of Informational Biology, Faculty of Natural Sciences, Novosibirsk State UniversityNovosibirsk, Russia.

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http://dx.doi.org/10.3389/fpls.2016.01878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156783PMC
December 2016

APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication.

Genome Res 2016 Feb 11;26(2):174-82. Epub 2016 Jan 11.

Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland; Institute of Genetics and Genomics in Geneva, 1211 Geneva, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1101/gr.197046.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4728370PMC
February 2016

A computational model of the effect of symplastic growth on cell mechanics in a linear leaf blade.

J Bioinform Comput Biol 2015 Feb 5;13(1):1540005. Epub 2015 Jan 5.

Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science, 10, Prospekt Lavrentyeva, Novosibirsk 630090, Russia.

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http://www.worldscientific.com/doi/abs/10.1142/S021972001540
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http://dx.doi.org/10.1142/S0219720015400053DOI Listing
February 2015

Gene age predicts the strength of purifying selection acting on gene expression variation in humans.

Am J Hum Genet 2014 Dec;95(6):660-74

Department of Genetic Medicine and Development, University of Geneva Medical School, 1 Rue Michel-Servet, 1211 Geneva, Switzerland; Institute of Genetics and Genomics in Geneva, 1211 Geneva, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4259975PMC
December 2014

Frequent cases of RAS-mutated Down syndrome acute lymphoblastic leukaemia lack JAK2 mutations.

Nat Commun 2014 Aug 8;5:4654. Epub 2014 Aug 8.

1] Department of Genetic Medicine and Development, University of Geneva Medical School, 1 rue Michel Servet, Geneva 1211, Switzerland [2] IGE3 institute of Genetics and Genomics of Geneva, 1 rue Michel Servet, Geneva 1211, Switzerland [3].

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http://dx.doi.org/10.1038/ncomms5654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665216PMC
August 2014

Simultaneous identification and prioritization of variants in familial, de novo, and somatic genetic disorders with VariantMaster.

Genome Res 2014 Feb 3;24(2):349-55. Epub 2014 Jan 3.

Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva 4, Switzerland;

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http://dx.doi.org/10.1101/gr.163832.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912425PMC
February 2014

The Not3/5 subunit of the Ccr4-Not complex: a central regulator of gene expression that integrates signals between the cytoplasm and the nucleus in eukaryotic cells.

Cell Signal 2013 Apr 29;25(4):743-51. Epub 2012 Dec 29.

Dpt of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, 1 Rue Michel Servet, 1211 Genève 4, Switzerland.

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http://dx.doi.org/10.1016/j.cellsig.2012.12.018DOI Listing
April 2013

Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes.

Mol Biol Evol 2013 Feb 14;30(2):347-55. Epub 2012 Sep 14.

Department of Genetic Medicine and Development, University of Geneva Medical School and iGE3 Institute of Genetics and Genomics of Geneva, Switzerland.

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http://dx.doi.org/10.1093/molbev/mss219DOI Listing
February 2013

[Early encounters of German-language explorers with the Tibetan medicine in Siberia in the modern era].

Forsch Komplementmed 2012 15;19(3):143-52. Epub 2012 Jun 15.

IOEB SO RAN, Forschungsinstitut für allgemeine und experimentelle Biologie der Russischen Akademie der Wissenschaften, Ulan-Ude, Russland.

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http://dx.doi.org/10.1159/000339343DOI Listing
January 2013

Deep phylogeny and evolution of slime moulds (mycetozoa).

Protist 2010 Jan 5;161(1):55-70. Epub 2009 Aug 5.

University of Oxford, Department of Zoology, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1016/j.protis.2009.05.002DOI Listing
January 2010

Phylogeny of novel naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised.

Protist 2009 Feb 26;160(1):75-109. Epub 2008 Oct 26.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1016/j.protis.2008.07.002DOI Listing
February 2009

The zooflagellates Stephanopogon and Percolomonas are a clade (class Percolatea: Phylum Percolozoa).

J Eukaryot Microbiol 2008 Nov-Dec;55(6):501-9

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, United Kingdom.

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http://doi.wiley.com/10.1111/j.1550-7408.2008.00356.x
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http://dx.doi.org/10.1111/j.1550-7408.2008.00356.xDOI Listing
January 2009

Evolutionary forces shape the human RFPL1,2,3 genes toward a role in neocortex development.

Am J Hum Genet 2008 Aug 24;83(2):208-18. Epub 2008 Jul 24.

Department of Pathology and Immunology, Faculty of Medicine, University of Geneva, Rue Michel-Servet 1, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1016/j.ajhg.2008.07.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2495069PMC
August 2008

Characterization of mouse Dactylaplasia mutations: a model for human ectrodactyly SHFM3.

Mamm Genome 2008 Apr 5;19(4):272-8. Epub 2008 Apr 5.

Department of Genetic Medicine and Development, University of Geneva Medical School and University Hospitals of Geneva, 1 Rue Michel-Servet, 1211 Geneva 4, Switzerland.

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http://link.springer.com/10.1007/s00335-008-9106-0
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http://dx.doi.org/10.1007/s00335-008-9106-0DOI Listing
April 2008

Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements.

Proc Natl Acad Sci U S A 2007 Dec 11;104(51):20443-8. Epub 2007 Dec 11.

Department of Genetic Medicine and Development, University of Geneva Medical School, 1 Rue Michel-Servet, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1073/pnas.0705658104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2154450PMC
December 2007

Phylogenomics reshuffles the eukaryotic supergroups.

PLoS One 2007 Aug 29;2(8):e790. Epub 2007 Aug 29.

Department of Zoology and Animal Biology, University of Geneva, Geneva, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000790PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1949142PMC
August 2007

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Genome Res 2007 Jun;17(6):760-74

Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://mendel.stanford.edu/sidowlab/pdfs/2007EncodeGR.pdf
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http://www.genome.org/cgi/doi/10.1101/gr.6034307
Publisher Site
http://dx.doi.org/10.1101/gr.6034307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891336PMC
June 2007

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa.

Genome 2006 Aug;49(8):882-7

University of Geneva, Department of Zoology and Animal Biology, Geneva, Israel.

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http://dx.doi.org/10.1139/g06-048DOI Listing
August 2006

Phylogenetic position of Multicilia marina and the evolution of Amoebozoa.

Int J Syst Evol Microbiol 2006 Jun;56(Pt 6):1449-58

Department of Evolutionary Biochemistry, AN Belozersky Institute of Physico-Chemical Biology, Moscow State University, Russia.

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http://ijs.microbiologyresearch.org/content/journal/ijsem/10
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http://dx.doi.org/10.1099/ijs.0.63763-0DOI Listing
June 2006

The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa.

Protist 2005 Aug;156(2):191-202

Department of Evolutionary Biochemistry, A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1016/j.protis.2005.03.002DOI Listing
August 2005

Molecular phylogenetic analysis places Percolomonas cosmopolitus within Heterolobosea: evolutionary implications.

J Eukaryot Microbiol 2004 Sep-Oct;51(5):575-81

Department of Evolutionary Biochemistry, A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1111/j.1550-7408.2004.tb00294.xDOI Listing
March 2005

The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes.

Proc Natl Acad Sci U S A 2004 May 17;101(21):8066-71. Epub 2004 May 17.

A. N. Belozersky Institute of Physico-Chemical Biology, Department of Evolutionary Biochemistry, Moscow State University, Moscow 119992, Russia.

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http://dx.doi.org/10.1073/pnas.0308602101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC419558PMC
May 2004