Serap Erkek

Serap Erkek

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Serap Erkek

Serap Erkek

Publications by authors named "Serap Erkek"

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23Publications

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InTAD: chromosome conformation guided analysis of enhancer target genes.

BMC Bioinformatics 2019 Jan 31;20(1):60. Epub 2019 Jan 31.

Department of Medicine, Division of Medical Genetics, University of California San Diego (UCSD), San Diego, USA.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-019-2655-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357397PMC
January 2019

Author Correction: The landscape of genomic alterations across childhood cancers.

Nature 2018 07;559(7714):E10

Hopp-Children's Cancer Center at the NCT Heidelberg (KiTZ), Heidelberg, Germany.

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http://dx.doi.org/10.1038/s41586-018-0167-2DOI Listing
July 2018

The landscape of genomic alterations across childhood cancers.

Nature 2018 03 28;555(7696):321-327. Epub 2018 Feb 28.

Hopp-Children's Cancer Center at the NCT Heidelberg (KiTZ), Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature25480DOI Listing
March 2018

Opposing Effects of CREBBP Mutations Govern the Phenotype of Rubinstein-Taybi Syndrome and Adult SHH Medulloblastoma.

Dev Cell 2018 03 15;44(6):709-724.e6. Epub 2018 Mar 15.

Center for Neuropathology, Ludwig-Maximilians-University, 81377 Munich, Germany; Research Institute Children's Cancer Center Hamburg, Martinistrasse 52, N63 (HPI), Hamburg 20251, Germany; Institute of Neuropathology, University Medical Center, Hamburg-Eppendorf, 20246 Hamburg, Germany; Department of Pediatric Hematology and Oncology, University Medical Center, Hamburg-Eppendorf, 20246 Hamburg, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2018.02.012DOI Listing
March 2018

Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling.

Nature 2018 01 20;553(7686):101-105. Epub 2017 Dec 20.

Department of Stem Cell Biology and Regenerative Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA.

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http://dx.doi.org/10.1038/nature25169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993422PMC
January 2018

The whole-genome landscape of medulloblastoma subtypes.

Nature 2017 07;547(7663):311-317

Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature22973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905700PMC
July 2017

Sperm is epigenetically programmed to regulate gene transcription in embryos.

Genome Res 2016 08 31;26(8):1034-46. Epub 2016 Mar 31.

Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, CB2 1QN, United Kingdom; Department of Zoology, University of Cambridge, Cambridge, CB2 3EJ, United Kingdom;

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http://dx.doi.org/10.1101/gr.201541.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971762PMC
August 2016

Disruption of histone methylation in developing sperm impairs offspring health transgenerationally.

Science 2015 Nov 8;350(6261):aab2006. Epub 2015 Oct 8.

Department of Pharmacology and Therapeutics, Faculty of Medicine, McGill University, Montreal, Quebec, Canada. Department of Animal Science, Faculty of Agricultural and Environmental Sciences, McGill University, Montreal, Quebec, Canada.

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http://dx.doi.org/10.1126/science.aab2006DOI Listing
November 2015

Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma.

Nature 2014 Jul 22;511(7510):428-34. Epub 2014 Jun 22.

1] Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, Heidelberg 69120, Germany [2] Department of Pediatric Oncology, Hematology & Immunology, Heidelberg University Hospital, Im Neuenheimer Feld 430, Heidelberg 69120, Germany.

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http://www.abta.org/resources/enhancers-hijacking-activates.
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http://www.nature.com/doifinder/10.1038/nature13379
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http://dx.doi.org/10.1038/nature13379DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4201514PMC
July 2014

Genome-wide chromatin analysis in mature mouse and human spermatozoa.

Nat Protoc 2013 Dec 14;8(12):2449-70. Epub 2013 Nov 14.

1] Friedrich Miescher Institute for Biomedical Research (FMI), Basel, Switzerland. [2] [3].

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http://dx.doi.org/10.1038/nprot.2013.145DOI Listing
December 2013

Na+/I- symporter and type 3 iodothyronine deiodinase gene expression in amniotic membrane and placenta and its relationship to maternal thyroid hormones.

Biol Trace Elem Res 2013 Sep 16;154(3):338-44. Epub 2013 Jul 16.

Department of Endocrinology and Metabolism, Faculty of Medicine, Gazi University, Ankara, Turkey.

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http://dx.doi.org/10.1007/s12011-013-9748-yDOI Listing
September 2013

Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa.

Nat Struct Mol Biol 2013 Jul 16;20(7):868-75. Epub 2013 Jun 16.

Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.

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http://dx.doi.org/10.1038/nsmb.2599DOI Listing
July 2013

Parental epigenetic control of embryogenesis: a balance between inheritance and reprogramming?

Curr Opin Cell Biol 2012 Jun 23;24(3):387-96. Epub 2012 Mar 23.

Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.

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http://dx.doi.org/10.1016/j.ceb.2012.03.002DOI Listing
June 2012

Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa.

Nat Struct Mol Biol 2010 Jun 16;17(6):679-87. Epub 2010 May 16.

Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.

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http://dx.doi.org/10.1038/nsmb.1821DOI Listing
June 2010