Senay Kafkas

Senay Kafkas

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Senay Kafkas

Senay Kafkas

Publications by authors named "Senay Kafkas"

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Ontology based mining of pathogen-disease associations from literature.

J Biomed Semantics 2019 09 18;10(1):15. Epub 2019 Sep 18.

Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.

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http://dx.doi.org/10.1186/s13326-019-0208-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6751637PMC
September 2019

PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research.

Sci Data 2019 Jun 3;6(1):79. Epub 2019 Jun 3.

Computer, Electrical and Mathematical Sciences & Engineering with Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.

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http://dx.doi.org/10.1038/s41597-019-0090-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6546783PMC
June 2019

Ontology based text mining of gene-phenotype associations: application to candidate gene prediction.

Database (Oxford) 2019 01;2019

Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

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http://dx.doi.org/10.1093/database/baz019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391585PMC
January 2019

Usage of cell nomenclature in biomedical literature.

BMC Bioinformatics 2017 12 21;18(Suppl 17):561. Epub 2017 Dec 21.

Computational Bioscience Research Center, Computer, Electrical and Mathematical Sciences & Engineering Division, King Abdullah University Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia.

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http://dx.doi.org/10.1186/s12859-017-1978-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763300PMC
December 2017

Literature evidence in open targets - a target validation platform.

J Biomed Semantics 2017 Jun 6;8(1):20. Epub 2017 Jun 6.

European Molecular Biology Laboratory (EMBL-EBI), European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.

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http://dx.doi.org/10.1186/s13326-017-0131-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461726PMC
June 2017

Section level search functionality in Europe PMC.

J Biomed Semantics 2015 10;6. Epub 2015 Mar 10.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom.

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http://dx.doi.org/10.1186/s13326-015-0003-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4359544PMC
March 2015

Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles.

J Biomed Semantics 2015 5;6. Epub 2015 Jan 5.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK.

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http://dx.doi.org/10.1186/2041-1480-6-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4363206PMC
March 2015

Database citation in full text biomedical articles.

PLoS One 2013 29;8(5):e63184. Epub 2013 May 29.

European Molecular Biology Laboratory - European Bioinformatics Institute Wellcome Trust Genome Campus, Cambridge, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0063184PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3667078PMC
January 2014

Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources.

J Biomed Semantics 2013 Oct 11;4(1):28. Epub 2013 Oct 11.

Institute of Computational Linguistics, University of Zürich, CH-8050 Zürich, Switzerland.

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http://dx.doi.org/10.1186/2041-1480-4-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4021975PMC
October 2013

Monitoring named entity recognition: the League Table.

J Biomed Semantics 2013 Sep 13;4(1):19. Epub 2013 Sep 13.

Department of Computational Linguistics, University of Zurich, Zürich, Switzerland.

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http://dx.doi.org/10.1186/2041-1480-4-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015903PMC
September 2013