Publications by authors named "Segun Jung"

18Publications

Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.

Cell Rep 2020 Aug;32(7):108029

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA; Department of Psychiatry, University of Maryland School of Medicine, Baltimore, MD 21201, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2020.108029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7462736PMC
August 2020

A novel MERTK mutation causing retinitis pigmentosa.

Graefes Arch Clin Exp Ophthalmol 2017 Aug 1;255(8):1613-1619. Epub 2017 May 1.

Grassi Retina, Naperville, IL, 60564, USA.

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http://dx.doi.org/10.1007/s00417-017-3679-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5542860PMC
August 2017

Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis.

Cancer Inform 2017 9;16:1-13. Epub 2017 Jan 9.

Division of Health and Biomedical Informatics, Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.

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http://dx.doi.org/10.4137/CIN.S39783DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5224237PMC
January 2017

Identification and validation of regulatory SNPs that modulate transcription factor chromatin binding and gene expression in prostate cancer.

Oncotarget 2016 08;7(34):54616-54626

Division of Health and Biomedical Informatics, Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.

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http://dx.doi.org/10.18632/oncotarget.10520DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5338917PMC
August 2016

Graph-based sampling for approximating global helical topologies of RNA.

Proc Natl Acad Sci U S A 2014 Mar 3;111(11):4079-84. Epub 2014 Mar 3.

Department of Chemistry, New York University, New York, NY 10003.

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http://dx.doi.org/10.1073/pnas.1318893111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964109PMC
March 2014

Interconversion between parallel and antiparallel conformations of a 4H RNA junction in domain 3 of foot-and-mouth disease virus IRES captured by dynamics simulations.

Biophys J 2014 Jan;106(2):447-58

Department of Chemistry and Courant Institute of Mathematical Sciences, New York University, New York, New York. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2013.12.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907234PMC
January 2014

Predicting helical topologies in RNA junctions as tree graphs.

PLoS One 2013 26;8(8):e71947. Epub 2013 Aug 26.

Department of Biology, Wilkes University, Wilkes-Barre, Pennsylvania, United States of America ; Department of Mathematics and Computer Science, Wilkes University, Wilkes-Barre, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071947PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753280PMC
April 2014

Candidate RNA structures for domain 3 of the foot-and-mouth-disease virus internal ribosome entry site.

Nucleic Acids Res 2013 Feb 28;41(3):1483-95. Epub 2012 Dec 28.

Department of Chemistry, Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY 10012, USA.

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http://dx.doi.org/10.1093/nar/gks1302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3561949PMC
February 2013

Biomolecularmodeling and simulation: a field coming of age.

Q Rev Biophys 2011 May;44(2):191-228

Department of Chemistry, New York University, 100 Washington Square East, Silver Building, New York, NY 10003, USA.

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http://dx.doi.org/10.1017/S0033583510000284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3700731PMC
May 2011

Tertiary motifs revealed in analyses of higher-order RNA junctions.

J Mol Biol 2009 Oct 3;393(1):67-82. Epub 2009 Aug 3.

Department of Chemistry, New York University, 251 Mercer Street, New York, NY 10012, USA.

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http://dx.doi.org/10.1016/j.jmb.2009.07.089DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174529PMC
October 2009

Learning from positive examples when the negative class is undetermined--microRNA gene identification.

Algorithms Mol Biol 2008 Jan 28;3. Epub 2008 Jan 28.

Systems Biology Division, Wistar Institute, Philadelphia, PA 19104, USA.

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http://almob.biomedcentral.com/articles/10.1186/1748-7188-3-
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http://dx.doi.org/10.1186/1748-7188-3-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2248178PMC
January 2008

Naïve Bayes for microRNA target predictions--machine learning for microRNA targets.

Bioinformatics 2007 Nov 8;23(22):2987-92. Epub 2007 Oct 8.

The Wistar Institute, Philadelphia, PA 19104, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btm484DOI Listing
November 2007

Recursive cluster elimination (RCE) for classification and feature selection from gene expression data.

BMC Bioinformatics 2007 May 2;8:144. Epub 2007 May 2.

The Wistar Institute, Systems Biology Division, Philadelphia, PA 19104, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-8-144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1877816PMC
May 2007