Sebastian Maurer-Stroh

Sebastian Maurer-Stroh

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Publications by authors named "Sebastian Maurer-Stroh"

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Flavivirus Cross-Reactivity to Dengue Nonstructural Protein 1 Antigen Detection Assays.

Diagnostics (Basel) 2019 Dec 24;10(1). Epub 2019 Dec 24.

Environmental Health Institute, National Environment Agency, Singapore 38667, Singapore.

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http://dx.doi.org/10.3390/diagnostics10010011DOI Listing
December 2019

Rare Human Missense Variants can affect the Function of Disease-Relevant Proteins by Loss and Gain of Peroxisomal Targeting Motifs.

Int J Mol Sci 2019 Sep 17;20(18). Epub 2019 Sep 17.

Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore 138671, Singapore.

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http://dx.doi.org/10.3390/ijms20184609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770196PMC
September 2019

Influenza A Hemagglutinin Passage Bias Sites and Host Specificity Mutations.

Cells 2019 08 22;8(9). Epub 2019 Aug 22.

Bioinformatics Institute, Agency for Science Technology and Research, Singapore 138671, Singapore.

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http://dx.doi.org/10.3390/cells8090958DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770435PMC
August 2019

Integrated Multimodal Evaluation of Genotoxicity in ZFN-Modified Primary Human Cells.

Methods Mol Biol 2018 ;1867:141-164

Division of Medical Sciences, Laboratory of Applied Human Genetics, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Republic of Singapore.

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http://dx.doi.org/10.1007/978-1-4939-8799-3_11DOI Listing
July 2019

Phylogenetic Clustering by Linear Integer Programming (PhyCLIP).

Mol Biol Evol 2019 07;36(7):1580-1595

Laboratory of Applied Evolutionary Biology, Department of Medical Microbiology, Academic Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.

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https://academic.oup.com/mbe/advance-article/doi/10.1093/mol
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http://dx.doi.org/10.1093/molbev/msz053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6573476PMC
July 2019

Inferring putative transmission clusters with Phydelity.

Virus Evol 2019 Jul 9;5(2):vez039. Epub 2019 Oct 9.

Laboratory of Applied Evolutionary Biology, Department of Medical Microbiology, Academic Medical Centre, Meibergdreef 9, 1105 AZ Amsterdam-Zuidoost, The Netherlands.

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http://dx.doi.org/10.1093/ve/vez039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6785678PMC
July 2019

A novel method for the capture-based purification of whole viral native RNA genomes.

AMB Express 2019 Apr 8;9(1):45. Epub 2019 Apr 8.

Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.

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https://amb-express.springeropen.com/articles/10.1186/s13568
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http://dx.doi.org/10.1186/s13568-019-0772-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6453989PMC
April 2019

Individual immune selection pressure has limited impact on seasonal influenza virus evolution.

Nat Ecol Evol 2019 02 3;3(2):302-311. Epub 2018 Dec 3.

Laboratory of Applied Evolutionary Biology, Department of Medical Microbiology, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1038/s41559-018-0741-xDOI Listing
February 2019

Supervised Segmentation of Un-Annotated Retinal Fundus Images by Synthesis.

IEEE Trans Med Imaging 2019 01 24;38(1):46-56. Epub 2018 Jul 24.

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http://dx.doi.org/10.1109/TMI.2018.2854886DOI Listing
January 2019

Influenza passaging annotations: what they tell us and why we should listen.

Virus Evol 2019 Jan 30;5(1):vez016. Epub 2019 Jun 30.

Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, USA.

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http://dx.doi.org/10.1093/ve/vez016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6599686PMC
January 2019

Synthesizing retinal and neuronal images with generative adversarial nets.

Med Image Anal 2018 10 4;49:14-26. Epub 2018 Jul 4.

Bioinformatics Institute, A*STAR, Singapore; Department of Electrical and Computer Engineering, University of Alberta, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.media.2018.07.001DOI Listing
October 2018

Genome-Wide Analysis of Protein-Coding Variants in Leprosy.

J Invest Dermatol 2017 12 24;137(12):2544-2551. Epub 2017 Aug 24.

Shandong Provincial Institute of Dermatology and Venereology, Shandong Academy of Medical Sciences, Jinan, China; Shandong Provincial Hospital for Skin Diseases, Shandong University, Jinan, China; Shandong Provincial Key Lab for Dermatovenereology, Jinan, China; Shandong Provincial Medical Center for Dermatovenereology, Jinan, China; School of Medicine, Shandong University, Jinan, China; School of Medicine and Life Science, University of Jinan-Shandong Academy of Medical Sciences, Jinan, Shandong, China; National Clinical Key Project of Dermatology and Venereology, Jinan, China. Electronic address:

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http://dx.doi.org/10.1016/j.jid.2017.08.004DOI Listing
December 2017

HIV-1 subtype CRF01_AE and B differ in utilization of low levels of CCR5, Maraviroc susceptibility and potential N-glycosylation sites.

Virology 2017 12 9;512:222-233. Epub 2017 Oct 9.

Department of Biomedical Sciences, Texas Tech University Health Sciences Center, El Paso, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2017.09.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653400PMC
December 2017

Inter-Species Host Gene Expression Differences in Response to Human and Avian Influenza A Virus Strains.

Int J Mol Sci 2017 Nov 1;18(11). Epub 2017 Nov 1.

Bioinformatics Institute (BII), 30 Biopolis Street, #07-01 Matrix Building, Singapore 138671, Singapore.

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http://dx.doi.org/10.3390/ijms18112295DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5713265PMC
November 2017

Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses.

Bull World Health Organ 2017 Jul 18;95(7):517-525I. Epub 2016 Jul 18.

Department of Epidemiology, Center for Communicable Disease Dynamics, Harvard TH Chan School of Public Health, 677 Huntington Ave, Boston, Massachusetts, 02115, United States of America (USA).

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http://dx.doi.org/10.2471/BLT.16.182105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5487971PMC
July 2017

Benchmarking selected computational gene network growing tools in context of virus-host interactions.

Sci Rep 2017 07 19;7(1):5805. Epub 2017 Jul 19.

Bioinformatics Institute, A*STAR, 30 Biopolis Street #07-01 Matrix, Singapore, 138671, Singapore.

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http://dx.doi.org/10.1038/s41598-017-06020-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517527PMC
July 2017

Systems-based approach to examine the cytokine responses in primary mouse lung macrophages infected with low pathogenic avian Influenza virus circulating in South East Asia.

BMC Genomics 2017 05 30;18(1):420. Epub 2017 May 30.

School of Biological Science, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Republic of Singapore.

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http://dx.doi.org/10.1186/s12864-017-3803-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450074PMC
May 2017

Dynamic Convergent Evolution Drives the Passage Adaptation across 48 Years' History of H3N2 Influenza Evolution.

Mol Biol Evol 2016 12 7;33(12):3133-3143. Epub 2016 Sep 7.

Human Genetics, Genome Institute of Singapore, A*STAR, Singapore

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http://dx.doi.org/10.1093/molbev/msw190DOI Listing
December 2016

Molecular and biochemical characterization of the NS1 protein of non-cultured influenza B virus strains circulating in Singapore.

Microb Genom 2016 08 25;2(8):e000082. Epub 2016 Aug 25.

1​School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore.

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http://dx.doi.org/10.1099/mgen.0.000082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320597PMC
August 2016

HIV-1 adaptation to low levels of CCR5 results in V3 and V2 loop changes that increase envelope pathogenicity, CCR5 affinity and decrease susceptibility to Maraviroc.

Virology 2016 06 24;493:86-99. Epub 2016 Mar 24.

Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Texas Tech University Health Sciences Center, El Paso, TX 79905, United States. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2016.03.010DOI Listing
June 2016

Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny.

Diagn Microbiol Infect Dis 2016 Mar 6;84(3):203-6. Epub 2015 Nov 6.

University of Colorado School of Medicine, 13001 E 17th Place, Aurora, CO 80045, USA; Center for Global Health, Colorado School of Public Health, and Children's Hospital Colorado, 13001 E 17th Place, Aurora, CO 80045, USA.

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http://dx.doi.org/10.1016/j.diagmicrobio.2015.11.003DOI Listing
March 2016

Multidimensional Genome-wide Analyses Show Accurate FVIII Integration by ZFN in Primary Human Cells.

Mol Ther 2016 Mar 22;24(3):607-19. Epub 2015 Dec 22.

Division of Medical Sciences, Laboratory of Applied Human Genetics, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Republic of Singapore.

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http://dx.doi.org/10.1038/mt.2015.223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4786920PMC
March 2016

Discovery of Influenza A Virus Sequence Pairs and Their Combinations for Simultaneous Heterosubtypic Targeting that Hedge against Antiviral Resistance.

PLoS Comput Biol 2016 Jan 15;12(1):e1004663. Epub 2016 Jan 15.

Biomolecular Function Discovery Division, Bioinformatics Institute (BII), A*STAR (Agency for Science, Technology and Research), Singapore, Singapore.

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http://dx.doi.org/10.1371/journal.pcbi.1004663DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714944PMC
January 2016

HPMV: human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes.

J Bioinform Comput Biol 2015 Oct 27;13(5):1550028. Epub 2015 Oct 27.

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street #07-01, Matrix, Singapore 138671, Singapore.

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http://dx.doi.org/10.1142/S0219720015500286DOI Listing
October 2015

Evolutionary trajectories and diagnostic challenges of potentially zoonotic avian influenza viruses H5N1 and H9N2 co-circulating in Egypt.

Infect Genet Evol 2015 Aug 3;34:278-91. Epub 2015 Jun 3.

Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut, Suedufer 10, 17493 Greifswald-Insel Riems, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2015.06.004DOI Listing
August 2015

Influenza viruses with B/Yamagata- and B/Victoria-like neuraminidases are differentially affected by mutations that alter antiviral susceptibility.

J Antimicrob Chemother 2015 Jul 18;70(7):2004-12. Epub 2015 Mar 18.

WHO Collaborating Centre for Reference and Research on Influenza, Melbourne, VIC, Australia Melbourne School of Population and Global Health, University of Melbourne, VIC, Australia

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http://dx.doi.org/10.1093/jac/dkv065DOI Listing
July 2015

Understanding Dengue Virus Capsid Protein Interaction with Key Biological Targets.

Sci Rep 2015 Jul 10;5:10592. Epub 2015 Jul 10.

Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.

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http://dx.doi.org/10.1038/srep10592DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498383PMC
July 2015

How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health.

Health Inf Sci Syst 2013 10;1. Epub 2013 Jan 10.

Bioinformatics Institute (BII), Agency for Science, Technology and Research (ASTAR), 30 Biopolis Street, #07-01, Matrix, 138671 Singapore ; School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, Singapore, 637553 Singapore ; Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive, Singapore, 117597 Singapore.

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http://link.springer.com/10.1186/2047-2501-1-2
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http://dx.doi.org/10.1186/2047-2501-1-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4336111PMC
March 2015

Emergence of norovirus GI.2 outbreaks in military camps in Singapore.

Int J Infect Dis 2015 Feb 18;31:23-30. Epub 2014 Dec 18.

HQ Medical Corps, Singapore Armed Forces, 701 Transit Road #04-01, Singapore 778910; Ministry of Health, Singapore.

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http://dx.doi.org/10.1016/j.ijid.2014.12.023DOI Listing
February 2015

Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B.

BMC Biochem 2014 Sep 10;15:21. Epub 2014 Sep 10.

Department of Medical Protein Research, VIB, Flanders Interuniversity Institute for Biotechnology, Ghent University, A, Baertsoenkaai 3, B9000 Ghent, Belgium.

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http://dx.doi.org/10.1186/1471-2091-15-21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4169252PMC
September 2014

Recognizing flu-like symptoms from videos.

BMC Bioinformatics 2014 Sep 12;15:300. Epub 2014 Sep 12.

Bioinformatics Institute, A*STAR, Singapore, Singapore.

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http://dx.doi.org/10.1186/1471-2105-15-300DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180141PMC
September 2014

Amyloid-based nanosensors and nanodevices.

Chem Soc Rev 2014 Aug;43(15):5326-45

Institute of Bioengineering and Nanotechnology (IBN), 31 Biopolis Way, The Nanos, #04-01, Singapore 138669, Singapore.

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http://dx.doi.org/10.1039/c4cs00082jDOI Listing
August 2014

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation.

BMC Bioinformatics 2014 Jun 2;15:166. Epub 2014 Jun 2.

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, Singapore 138671, Singapore.

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http://dx.doi.org/10.1186/1471-2105-15-166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4061105PMC
June 2014

Holistic view on the extended substrate specificities of orthologous granzymes.

J Proteome Res 2014 Apr 10;13(4):1785-93. Epub 2014 Mar 10.

Department of Medical Protein Research, VIB , B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1021/pr401104bDOI Listing
April 2014

Estimating the fitness advantage conferred by permissive neuraminidase mutations in recent oseltamivir-resistant A(H1N1)pdm09 influenza viruses.

PLoS Pathog 2014 Apr 3;10(4):e1004065. Epub 2014 Apr 3.

World Health Organization Collaborating Centre for Reference and Research on Influenza, North Melbourne, Australia; Monash University, School of Applied Sciences, Churchill, Victoria, Australia.

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http://dx.doi.org/10.1371/journal.ppat.1004065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974874PMC
April 2014

Playing hide and seek: how glycosylation of the influenza virus hemagglutinin can modulate the immune response to infection.

Viruses 2014 Mar 14;6(3):1294-316. Epub 2014 Mar 14.

Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Victoria 3010, Australia.

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http://dx.doi.org/10.3390/v6031294DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3970151PMC
March 2014

Genetic signatures of HIV-1 envelope-mediated bystander apoptosis.

J Biol Chem 2014 Jan 21;289(5):2497-514. Epub 2013 Nov 21.

From the Center of Excellence for Infectious Diseases, Department of Biomedical Sciences, Texas Tech University Health Sciences Center, El Paso, Texas 79905.

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http://dx.doi.org/10.1074/jbc.M113.514018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3908386PMC
January 2014

A simple shortcut to unsupervised alignment-free phylogenetic genome groupings, even from unassembled sequencing reads.

J Bioinform Comput Biol 2013 Dec 2;11(6):1343005. Epub 2013 Dec 2.

Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, Singapore 138671, Singapore , School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, Singapore 637551, Singapore.

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http://www.worldscientific.com/doi/abs/10.1142/S021972001343
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http://dx.doi.org/10.1142/S0219720013430051DOI Listing
December 2013

Automatic phylogenetic classification of bacterial beta-lactamase sequences including structural and antibiotic substrate preference information.

J Bioinform Comput Biol 2013 Dec 11;11(6):1343011. Epub 2013 Dec 11.

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, #07-01 Matrix, Singapore 138671, Singapore.

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http://dx.doi.org/10.1142/S0219720013430117DOI Listing
December 2013

A new piece in the puzzle of the novel avian-origin influenza A (H7N9) virus.

Biol Direct 2013 Oct 26;8:26. Epub 2013 Oct 26.

Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix Building, 138671 Singapore, Singapore.

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http://dx.doi.org/10.1186/1745-6150-8-26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016609PMC
October 2013

Identification of conserved motifs in the West Nile virus envelope essential for particle secretion.

BMC Microbiol 2013 Sep 4;13:197. Epub 2013 Sep 4.

Department of Biomedical Sciences, Texas Tech University Health Sciences Center, 5001 El Paso Dr, MSB-1 Annex, El Paso, TX 79905, USA.

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http://dx.doi.org/10.1186/1471-2180-13-197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3766686PMC
September 2013

Addition of glycosylation to influenza A virus hemagglutinin modulates antibody-mediated recognition of H1N1 2009 pandemic viruses.

J Immunol 2013 Mar 30;190(5):2169-77. Epub 2013 Jan 30.

Department of Microbiology and Immunology, University of Melbourne, Melbourne 3010, Victoria, Australia.

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http://dx.doi.org/10.4049/jimmunol.1202433DOI Listing
March 2013

Motif discovery with data mining in 3D protein structure databases: discovery, validation and prediction of the U-shape zinc binding ("Huf-Zinc") motif.

J Bioinform Comput Biol 2013 Feb 16;11(1):1340008. Epub 2013 Jan 16.

Bioinformatics Institute-BII, Agency for Science and Technology (A*STAR), 30 Biopolis Street #07-01, Matrix, 138671 Singapore.

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https://lirias.kuleuven.be/bitstream/123456789/390285/1/JBCB
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http://www.worldscientific.com/doi/abs/10.1142/S021972001340
Publisher Site
http://dx.doi.org/10.1142/S0219720013400088DOI Listing
February 2013

Beware of moving targets: reference proteome content fluctuates substantially over the years.

J Bioinform Comput Biol 2012 Dec 7;10(6):1250020. Epub 2012 Aug 7.

Bioinformatics Institute (BII), Agency for Science and Technology (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, Singapore.

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http://dx.doi.org/10.1142/S0219720012500205DOI Listing
December 2012

Transmembrane helix: simple or complex.

Nucleic Acids Res 2012 Jul 7;40(Web Server issue):W370-5. Epub 2012 May 7.

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A STAR), 30 Biopolis Street, #07-01, Matrix, Singapore 138671.

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http://dx.doi.org/10.1093/nar/gks379DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394259PMC
July 2012

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.

Bioinformatics 2012 Jun 23;28(12):1645-6. Epub 2012 Apr 23.

Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, Singapore.

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http://dx.doi.org/10.1093/bioinformatics/bts197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371831PMC
June 2012

Mutations I117V and I117M and oseltamivir sensitivity of pandemic (H1N1) 2009 viruses.

Emerg Infect Dis 2012 Jan;18(1):109-12

WHO Collaborating Centre for Reference and Research on Infl uenza, Victorian Infectious Diseases Reference Laboratory, 10 Wreckyn St, North Melbourne, 3051 Victoria,Australia.

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http://dx.doi.org/10.3201/eid1801.111079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3310118PMC
January 2012

Structural insight into the glycosylphosphatidylinositol transamidase subunits PIG-K and PIG-S from yeast.

J Struct Biol 2011 Feb 4;173(2):271-81. Epub 2010 Dec 4.

Bioinformatics Institute, (BII), Agency for Science, Technology and Research (A∗STAR), Singapore, Singapore.

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http://dx.doi.org/10.1016/j.jsb.2010.11.026DOI Listing
February 2011

The Janus-faced E-values of HMMER2: extreme value distribution or logistic function?

J Bioinform Comput Biol 2011 Feb;9(1):179-206

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A *STAR), 30 Biopolis Street #07-01, Matrix, Singapore 138671, Singapore.

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February 2011

All that glitters is not gold--founder effects complicate associations of flu mutations to disease severity.

Virol J 2010 Nov 1;7:297. Epub 2010 Nov 1.

Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix 138671, Singapore.

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http://dx.doi.org/10.1186/1743-422X-7-297DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2989967PMC
November 2010