Sebastian Klie

Sebastian Klie

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Sebastian Klie

Sebastian Klie

Publications by authors named "Sebastian Klie"

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25Publications

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Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings.

Plant Cell Environ 2016 Apr 1;39(4):768-86. Epub 2015 Dec 1.

Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany.

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http://dx.doi.org/10.1111/pce.12642DOI Listing
April 2016

FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants.

Plant Physiol 2016 Mar 11;170(3):1878-94. Epub 2016 Jan 11.

Max Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany (C.R., T.T, S.K., A.R.F., Z.N., M.M.), School of Biosciences and Australian Research Council Centre of Excellence in Plant Cell Walls, University of Melbourne, Parkville, Victoria 3010, Australia (A.M., S.P.); andDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125 (A.S.)

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http://www.plantphysiol.org/content/early/2016/01/11/pp.15.0
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http://www.plantphysiol.org/lookup/doi/10.1104/pp.15.01281
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http://dx.doi.org/10.1104/pp.15.01281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4775111PMC
March 2016

Differential metabolic and coexpression networks of plant metabolism.

Trends Plant Sci 2015 May 16;20(5):266-268. Epub 2015 Mar 16.

Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.tplants.2015.02.002DOI Listing
May 2015

Concurrent conditional clustering of multiple networks: COCONETS.

PLoS One 2014 8;9(8):e103637. Epub 2014 Aug 8.

Systems Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0103637PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4126743PMC
April 2015

Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells.

Ann Bot 2014 Oct 22;114(6):1109-23. Epub 2014 Aug 22.

Max-Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany Targenomix GmbH, Potsdam-Golm, 14476, Germany

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http://dx.doi.org/10.1093/aob/mcu151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4195562PMC
October 2014

An integrated genomic and metabolomic framework for cell wall biology in rice.

BMC Genomics 2014 Jul 15;15:596. Epub 2014 Jul 15.

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, P, R, China.

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http://dx.doi.org/10.1186/1471-2164-15-596DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112216PMC
July 2014

Biological cluster evaluation for gene function prediction.

J Comput Biol 2014 Jun 8;21(6):428-45. Epub 2010 Jan 8.

1 Max-Planck Institute for Molecular Plant Physiology , Potsdam, Brandenburg, Germany .

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http://www.liebertpub.com/doi/10.1089/cmb.2009.0129
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http://dx.doi.org/10.1089/cmb.2009.0129DOI Listing
June 2014

Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean.

Plant Cell 2014 May 21;26(5):1901-1912. Epub 2014 May 21.

Department of Agricultural, Food, and Environmental Sciences, Università Politecnica delle Marche, 60131 Ancona, Italy Consiglio per la Ricerca e Sperimentazione in Agricoltura, Cereal Research Centre (CRA-CER), 71122 Foggia, Italy

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http://dx.doi.org/10.1105/tpc.114.124040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079357PMC
May 2014

Conserved changes in the dynamics of metabolic processes during fruit development and ripening across species.

Plant Physiol 2014 Jan 15;164(1):55-68. Epub 2013 Nov 15.

Genes and Small Molecules Group , Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.

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http://dx.doi.org/10.1104/pp.113.226142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3875825PMC
January 2014

Network-based segmentation of biological multivariate time series.

PLoS One 2013 7;8(5):e62974. Epub 2013 May 7.

Institute of Biochemistry and Biology, University of Potsdam, Potsdam-Golm, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0062974PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3646968PMC
December 2013

Data integration through proximity-based networks provides biological principles of organization across scales.

Plant Cell 2013 Jun 7;25(6):1917-27. Epub 2013 Jun 7.

Systems Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.

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http://dx.doi.org/10.1105/tpc.113.111039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723603PMC
June 2013

Principal components analysis.

Methods Mol Biol 2013 ;930:527-47

AG Bioinformatics, University of Potsdam, Potsdam-Golm, Germany.

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http://link.springer.com/10.1007/978-1-62703-059-5_22
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http://dx.doi.org/10.1007/978-1-62703-059-5_22DOI Listing
March 2013

Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions.

Front Plant Sci 2012 16;3:249. Epub 2012 Nov 16.

Genes and Small Molecules Group, Max Planck Institute of Molecular Plant Physiology Potsdam, Germany.

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http://dx.doi.org/10.3389/fpls.2012.00249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499770PMC
November 2012

The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science.

Front Genet 2012 28;3:115. Epub 2012 Jun 28.

Genes and Small Molecules Group, Max-Planck Institute of Molecular Plant Physiology Potsdam-Golm, Germany.

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http://dx.doi.org/10.3389/fgene.2012.00115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384976PMC
October 2012

Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views.

Mol Biosyst 2012 Sep 29;8(9):2233-41. Epub 2012 Jun 29.

Max-Planck Institute of Molecular Plant Physiology, Potsdam, Germany.

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http://dx.doi.org/10.1039/c2mb25089fDOI Listing
September 2012

Analysis of the compartmentalized metabolome - a validation of the non-aqueous fractionation technique.

Front Plant Sci 2011 22;2:55. Epub 2011 Sep 22.

Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology Potsdam-Golm, Germany.

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http://dx.doi.org/10.3389/fpls.2011.00055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3355776PMC
August 2012

Additional role of O-acetylserine as a sulfur status-independent regulator during plant growth.

Plant J 2012 May 8;70(4):666-77. Epub 2012 Mar 8.

Max Planck Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, Germany.

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http://dx.doi.org/10.1111/j.1365-313X.2012.04905.xDOI Listing
May 2012

Complexity of automated gene annotation.

Biosystems 2011 Apr 8;104(1):1-8. Epub 2011 Jan 8.

Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Strasse 24-25, Potsdam, Germany.

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http://dx.doi.org/10.1016/j.biosystems.2010.12.003DOI Listing
April 2011

Metabolomic and transcriptomic stress response of Escherichia coli.

Mol Syst Biol 2010 May;6:364

Molecular Plant Physiology, Max-Planck-Institute for Molecular Plant Physiology, Potsdam-Golm, Germany.

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http://dx.doi.org/10.1038/msb.2010.18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2890322PMC
May 2010

PRIDE: new developments and new datasets.

Nucleic Acids Res 2008 Jan 22;36(Database issue):D878-83. Epub 2007 Nov 22.

EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkm1021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238846PMC
January 2008

Analyzing large-scale proteomics projects with latent semantic indexing.

J Proteome Res 2008 Jan 30;7(1):182-91. Epub 2007 Nov 30.

Martin Luther University Halle-Wittenberg, Halle-Saale, Germany.

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http://dx.doi.org/10.1021/pr070461kDOI Listing
January 2008