Sean McWilliam

Sean McWilliam

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Sean McWilliam

Sean McWilliam

Publications by authors named "Sean McWilliam"

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Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle.

BMC Genomics 2020 Jan 28;21(1):77. Epub 2020 Jan 28.

New South Wales Department of Primary Industries, Armidale Livestock Industries Centre, University of New England, Armidale, NSW, 2351, Australia.

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http://dx.doi.org/10.1186/s12864-020-6505-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6986065PMC
January 2020

Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon.

BMC Genomics 2019 Feb 15;20(1):139. Epub 2019 Feb 15.

Commonwealth Scientific and Industrial Research Organisation Agriculture and Food, Queensland Bioscience Precinct, St Lucia Brisbane, 4067, Australia.

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http://dx.doi.org/10.1186/s12864-019-5525-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6377724PMC
February 2019

Whole-genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep.

Mol Ecol 2015 Nov 6;24(22):5616-32. Epub 2015 Nov 6.

CSIRO Agriculture, 306 Carmody Road, St Lucia, Brisbane, Qld, 4067, Australia.

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http://dx.doi.org/10.1111/mec.13415DOI Listing
November 2015

Genomic correlation: harnessing the benefit of combining two unrelated populations for genomic selection.

Genet Sel Evol 2015 Nov 2;47:84. Epub 2015 Nov 2.

CSIRO Agriculture, Queensland Bioscience Precinct, St. Lucia, QLD, 4067, Australia.

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http://dx.doi.org/10.1186/s12711-015-0162-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4630892PMC
November 2015

SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates.

Mol Ecol Resour 2015 Jul 23;15(4):723-36. Epub 2014 Nov 23.

School of Biological and Biomedical Sciences, Durham University, Durham, DH1 3LE, UK.

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http://dx.doi.org/10.1111/1755-0998.12343DOI Listing
July 2015

Transcriptome profiles of Penaeus (Marsupenaeus) japonicus animal and vegetal half-embryos: identification of sex determination, germ line, mesoderm, and other developmental genes.

Mar Biotechnol (NY) 2015 Jun 30;17(3):252-65. Epub 2015 Jan 30.

CSIRO Agriculture Flagship, Integrated Sustainable Aquaculture, Dutton Park, Qld, 4102, Australia,

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http://dx.doi.org/10.1007/s10126-015-9613-4DOI Listing
June 2015

Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle.

BMC Genomics 2015 May 15;16:384. Epub 2015 May 15.

Queensland Alliance for Agriculture and Food Innovation, Centre for Animal Science, The University of Queensland, Brisbane, QLD, 4067, Australia.

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http://www.biomedcentral.com/1471-2164/16/384
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http://dx.doi.org/10.1186/s12864-015-1595-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432507PMC
May 2015

Exploiting genomic data to identify proteins involved in abalone reproduction.

J Proteomics 2014 Aug 12;108:337-53. Epub 2014 Jun 12.

CSIRO Food Futures Flagship, 5 Julius Avenue, North Ryde, New South Wales 2113, Australia; CSIRO Animal, Food and Health Sciences, Queensland Bioscience Precinct, 306 Carmody Road, St Lucia, Queensland 4067, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2014.06.001DOI Listing
August 2014

Variation in genes involved in epigenetic processes offers insights into tropically adapted cattle diversity.

Front Genet 2014 22;5:89. Epub 2014 Apr 22.

CSIRO Food Futures Flagship and CSIRO Animal, Health and Food Sciences Brisbane, QLD, Australia.

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http://dx.doi.org/10.3389/fgene.2014.00089DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4001012PMC
May 2014

Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest.

BMC Bioinformatics 2014 Mar 7;15:66. Epub 2014 Mar 7.

Computational and Systems Biology, CSIRO Animal, Food and Health Sciences, St, Lucia, Brisbane, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2105-15-66DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015654PMC
March 2014

Analysis of copy number variants in the cattle genome.

Gene 2011 Aug 18;482(1-2):73-7. Epub 2011 May 18.

CSIRO Livestock Industries, Level 5 Queensland Bioscience Precinct, 306 Carmody Road, St Lucia 4067, Australia.

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http://dx.doi.org/10.1016/j.gene.2011.04.011DOI Listing
August 2011

Skeletal muscle specific genes networks in cattle.

Funct Integr Genomics 2010 Nov 4;10(4):609-18. Epub 2010 Jun 4.

Departamento de Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Ctra de A Coruña km 7.5, 28040 Madrid, Spain.

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http://dx.doi.org/10.1007/s10142-010-0175-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2990504PMC
November 2010

Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes.

BMC Genomics 2010 Aug 3;11:458. Epub 2010 Aug 3.

CSIRO Livestock Industries, 306 Carmody Road, St, Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-11-458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091654PMC
August 2010

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.

Science 2009 Apr;324(5926):528-32

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http://dx.doi.org/10.1126/science.1167936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735092PMC
April 2009

Analysis of the complement and molecular evolution of tRNA genes in cow.

BMC Genomics 2009 Apr 24;10:188. Epub 2009 Apr 24.

CSIRO Livestock Industries, Queensland Biosciences Precinct, St Lucia, QLD, Australia.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-10-188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680898PMC
April 2009

A multiway analysis for identifying high integrity bovine BACs.

BMC Genomics 2009 Jan 23;10:46. Epub 2009 Jan 23.

CSIRO Livestock Industries, 306 Carmody Road, St. Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-10-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660975PMC
January 2009

Origin, evolution, and biological role of miRNA cluster in DLK-DIO3 genomic region in placental mammals.

Mol Biol Evol 2008 May 14;25(5):939-48. Epub 2008 Feb 14.

Commonwealth Scientific and Industrial Research Organisation CSIRO Livestock Industries, Queensland Bioscience Precinct QBP, St Lucia, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1093/molbev/msn045DOI Listing
May 2008

Identification of a gene network contributing to hypertrophy in callipyge skeletal muscle.

Physiol Genomics 2007 Feb 31;28(3):253-72. Epub 2006 Oct 31.

Commonwealth Scientific and Industrial Research Organisation Livestock Industries, Queensland Bioscience Precinct, St. Lucia, Queensland, Australia.

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http://dx.doi.org/10.1152/physiolgenomics.00121.2006DOI Listing
February 2007

A gene coexpression network for bovine skeletal muscle inferred from microarray data.

Physiol Genomics 2006 Dec 19;28(1):76-83. Epub 2006 Sep 19.

Bioinformatics Group, Commonwealth Scientific and Industrial Research Organisation Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St. Lucia, QLD 4067, Australia.

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http://physiolgenomics.physiology.org/content/physiolgenomic
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http://physiolgenomics.physiology.org/lookup/doi/10.1152/phy
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http://dx.doi.org/10.1152/physiolgenomics.00105.2006DOI Listing
December 2006

Gene expression profiling of bovine in vitro adipogenesis using a cDNA microarray.

Funct Integr Genomics 2006 Jul 10;6(3):235-49. Epub 2006 Feb 10.

The Cooperative Research Center for Cattle and Beef Quality, CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Road, St. Lucia, Qld 4067, Australia.

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http://dx.doi.org/10.1007/s10142-005-0016-xDOI Listing
July 2006

Construction and validation of a Bovine Innate Immune Microarray.

BMC Genomics 2005 Sep 22;6:135. Epub 2005 Sep 22.

CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia 4067, QLD, Australia.

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http://dx.doi.org/10.1186/1471-2164-6-135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261263PMC
September 2005

Characterisation and application of a bovine U6 promoter for expression of short hairpin RNAs.

BMC Biotechnol 2005 May 11;5:13. Epub 2005 May 11.

CSIRO Livestock Industries, Australian Animal Health Laboratory, Geelong, VIC 3220, Australia.

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http://dx.doi.org/10.1186/1472-6750-5-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1142307PMC
May 2005

Validation of alternative methods of data normalization in gene co-expression studies.

Bioinformatics 2005 Apr 25;21(7):1112-20. Epub 2004 Nov 25.

Bioinformatics Group, CSIRO Livestock Industries, Queensland Bioscience Precinct, St Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1093/bioinformatics/bti124DOI Listing
April 2005

Transcriptional profiling of skeletal muscle tissue from two breeds of cattle.

Mamm Genome 2005 Mar;16(3):201-10

Cooperative Research Center for Cattle and Beef Quality, CSIRO Livestock Industries, Queensland Bioscience Precinct, 306 Carmody Rd., St. Lucia, Brisbane, Queensland, 4067, Australia.

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http://dx.doi.org/10.1007/s00335-004-2419-8DOI Listing
March 2005

An interactive bovine in silico SNP database (IBISS).

Mamm Genome 2004 Oct;15(10):819-27

Queensland Bioscience Precinct, CSIRO Livestock Industries, 306 Carmody Road, St. Lucia, Australia.

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http://dx.doi.org/10.1007/s00335-004-2382-4DOI Listing
October 2004