Publications by authors named "Scott Zuyderduyn"

14Publications

Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection.

BMC Med Genomics 2018 02 23;11(1):20. Epub 2018 Feb 23.

HKU-Pasteur Research Pole and Centre of Influenza Research, School of Public Health, The University of Hong Kong, Hong Kong, China.

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http://dx.doi.org/10.1186/s12920-018-0335-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6389164PMC
February 2018

Divergent clonal selection dominates medulloblastoma at recurrence.

Authors:
A Sorana Morrissy Livia Garzia David J H Shih Scott Zuyderduyn Xi Huang Patryk Skowron Marc Remke Florence M G Cavalli Vijay Ramaswamy Patricia E Lindsay Salomeh Jelveh Laura K Donovan Xin Wang Betty Luu Kory Zayne Yisu Li Chelsea Mayoh Nina Thiessen Eloi Mercier Karen L Mungall Yusanne Ma Kane Tse Thomas Zeng Karey Shumansky Andrew J L Roth Sohrab Shah Hamza Farooq Noriyuki Kijima Borja L Holgado John J Y Lee Stuart Matan-Lithwick Jessica Liu Stephen C Mack Alex Manno K A Michealraj Carolina Nor John Peacock Lei Qin Juri Reimand Adi Rolider Yuan Y Thompson Xiaochong Wu Trevor Pugh Adrian Ally Mikhail Bilenky Yaron S N Butterfield Rebecca Carlsen Young Cheng Eric Chuah Richard D Corbett Noreen Dhalla An He Darlene Lee Haiyan I Li William Long Michael Mayo Patrick Plettner Jenny Q Qian Jacqueline E Schein Angela Tam Tina Wong Inanc Birol Yongjun Zhao Claudia C Faria José Pimentel Sofia Nunes Tarek Shalaby Michael Grotzer Ian F Pollack Ronald L Hamilton Xiao-Nan Li Anne E Bendel Daniel W Fults Andrew W Walter Toshihiro Kumabe Teiji Tominaga V Peter Collins Yoon-Jae Cho Caitlin Hoffman David Lyden Jeffrey H Wisoff James H Garvin Duncan S Stearns Luca Massimi Ulrich Schüller Jaroslav Sterba Karel Zitterbart Stephanie Puget Olivier Ayrault Sandra E Dunn Daniela P C Tirapelli Carlos G Carlotti Helen Wheeler Andrew R Hallahan Wendy Ingram Tobey J MacDonald Jeffrey J Olson Erwin G Van Meir Ji-Yeoun Lee Kyu-Chang Wang Seung-Ki Kim Byung-Kyu Cho Torsten Pietsch Gudrun Fleischhack Stephan Tippelt Young Shin Ra Simon Bailey Janet C Lindsey Steven C Clifford Charles G Eberhart Michael K Cooper Roger J Packer Maura Massimino Maria Luisa Garre Ute Bartels Uri Tabori Cynthia E Hawkins Peter Dirks Eric Bouffet James T Rutka Robert J Wechsler-Reya William A Weiss Lara S Collier Adam J Dupuy Andrey Korshunov David T W Jones Marcel Kool Paul A Northcott Stefan M Pfister David A Largaespada Andrew J Mungall Richard A Moore Nada Jabado Gary D Bader Steven J M Jones David Malkin Marco A Marra Michael D Taylor

Nature 2016 Jan 13;529(7586):351-7. Epub 2016 Jan 13.

Developmental &Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.

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http://dx.doi.org/10.1038/nature16478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936195PMC
January 2016

Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma.

Nature 2014 Jul 22;511(7510):428-34. Epub 2014 Jun 22.

1] Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, Heidelberg 69120, Germany [2] Department of Pediatric Oncology, Hematology & Immunology, Heidelberg University Hospital, Im Neuenheimer Feld 430, Heidelberg 69120, Germany.

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http://www.abta.org/resources/enhancers-hijacking-activates.
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http://www.nature.com/doifinder/10.1038/nature13379
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http://dx.doi.org/10.1038/nature13379DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4201514PMC
July 2014

Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model.

BMC Bioinformatics 2007 Aug 2;8:282. Epub 2007 Aug 2.

Victor Ling Laboratory, Department of Cancer Genetics and Developmental Biology, BC Cancer Research Centre, 675 West 10th Ave,, Vancouver, Canada.

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http://dx.doi.org/10.1186/1471-2105-8-282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2147036PMC
August 2007

DiscoverySpace: an interactive data analysis application.

Genome Biol 2007 ;8(1):R6

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Research Centre, British Columbia Cancer Agency, Vancouver, BC, Canada.

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http://dx.doi.org/10.1186/gb-2007-8-1-r6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839122PMC
April 2007

Iron-regulated transcription and capsule formation in the fungal pathogen Cryptococcus neoformans.

Mol Microbiol 2005 Mar;55(5):1452-72

The Michael Smith Laboratories, Department of Microbiology and Immunology, and Faculty of Agricultural Sciences, The University of British Columbia, Vancouver, BC V6T 1Z4, Canada.

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http://doi.wiley.com/10.1111/j.1365-2958.2004.04474.x
Publisher Site
http://dx.doi.org/10.1111/j.1365-2958.2004.04474.xDOI Listing
March 2005

Serial analysis of gene expression profiles of developmental stages in non-small cell lung carcinoma.

Chest 2004 May;125(5 Suppl):97S

Department of Cancer Imaging, Canada's Michael Smith Genome Science Centre, BC Cancer Agency, Toronto, ON, Canada.

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http://dx.doi.org/10.1378/chest.125.5_suppl.97sDOI Listing
May 2004

Effect of TERT and ATM on gene expression profiles in human fibroblasts.

Genes Chromosomes Cancer 2004 Apr;39(4):298-310

Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.

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http://doi.wiley.com/10.1002/gcc.20006
Publisher Site
http://dx.doi.org/10.1002/gcc.20006DOI Listing
April 2004

A knowledge discovery object model API for Java.

BMC Bioinformatics 2003 Oct 28;4:51. Epub 2003 Oct 28.

Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 600 West 10th Ave, Vancouver, Canada.

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http://dx.doi.org/10.1186/1471-2105-4-51DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC272928PMC
October 2003

A SAGE approach to discovery of genes involved in autophagic cell death.

Curr Biol 2003 Feb;13(4):358-63

Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada. sgorski@

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http://dx.doi.org/10.1016/s0960-9822(03)00082-4DOI Listing
February 2003

Temperature-regulated transcription in the pathogenic fungus Cryptococcus neoformans.

Genome Res 2002 Sep;12(9):1386-400

Biotechnology Laboratory, Department of Microbiology and Immunology, and Faculty of Agricultural Sciences, The University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada.

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http://dx.doi.org/10.1101/gr.80202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186651PMC
September 2002