Scott W Roy

Scott W Roy

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Scott W Roy

Scott W Roy

Publications by authors named "Scott W Roy"

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Comprehensive database and evolutionary dynamics of U12-type introns.

Nucleic Acids Res 2020 Jun 2. Epub 2020 Jun 2.

Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic Lerner College of Medicine, Cleveland Clinic and Department of Molecular Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.

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http://dx.doi.org/10.1093/nar/gkaa464DOI Listing
June 2020

Molecular Evolution: RNA Splicing Machinery Moonlights in Junk Removal.

Curr Biol 2019 10;29(19):R920-R922

Molecular Cell Biology, University of California-Merced, Merced, CA 95343, USA.

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http://dx.doi.org/10.1016/j.cub.2019.08.046DOI Listing
October 2019

On the Function of Trans-Splicing: No Evidence for Widespread Proteome Diversification in Trypanosomes.

Genome Biol Evol 2019 10;11(10):3014-3021

Department of Biology, San Francisco State University.

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http://dx.doi.org/10.1093/gbe/evz217DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821157PMC
October 2019

Investigating Instructor Talk in Novel Contexts: Widespread Use, Unexpected Categories, and an Emergent Sampling Strategy.

CBE Life Sci Educ 2019 09;18(3):ar47

Department of Biology, San Francisco State University, San Francisco, CA 94132.

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http://dx.doi.org/10.1187/cbe.18-10-0215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6755320PMC
September 2019

Collectively Improving Our Teaching: Attempting Biology Department-wide Professional Development in Scientific Teaching.

CBE Life Sci Educ 2018 ;17(1)

Department of Biology, San Francisco State University, San Francisco, CA 94132

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https://www.lifescied.org/doi/10.1187/cbe.17-06-0106
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http://dx.doi.org/10.1187/cbe.17-06-0106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007775PMC
May 2019

Intragenomic Conflict and Immune Tolerance: Do Selfish X-Linked Alleles Drive Skewed X Chromosome Inactivation?

Authors:
Scott W Roy

Genome Biol Evol 2018 03;10(3):857-862

Department of Biology, San Francisco State University.

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http://dx.doi.org/10.1093/gbe/evx221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5861445PMC
March 2018

Classroom sound can be used to classify teaching practices in college science courses.

Proc Natl Acad Sci U S A 2017 03 6;114(12):3085-3090. Epub 2017 Mar 6.

Department of Biology, San Francisco State University, San Francisco, CA 94132;

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http://dx.doi.org/10.1073/pnas.1618693114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5373389PMC
March 2017

Is Genome Complexity a Consequence of Inefficient Selection? Evidence from Intron Creation in Nonrecombining Regions.

Authors:
Scott W Roy

Mol Biol Evol 2016 12 20;33(12):3088-3094. Epub 2016 Sep 20.

Department of Biology, San Francisco State University, San Francisco, CA

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http://dx.doi.org/10.1093/molbev/msw172DOI Listing
December 2016

Is Mutation Random or Targeted?: No Evidence for Hypermutability in Snail Toxin Genes.

Authors:
Scott W Roy

Mol Biol Evol 2016 10 2;33(10):2642-7. Epub 2016 Aug 2.

Department of Biology, San Francisco State University

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http://dx.doi.org/10.1093/molbev/msw140DOI Listing
October 2016

Mechanism for DNA transposons to generate introns on genomic scales.

Nature 2016 10 19;538(7626):533-536. Epub 2016 Oct 19.

Department of Biology, San Francisco State University, San Francisco, California 94132, USA.

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http://dx.doi.org/10.1038/nature20110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5684705PMC
October 2016

HAPCAD: An open-source tool to detect PCR crossovers in next-generation sequencing generated HLA data.

Hum Immunol 2016 Mar 20;77(3):257-263. Epub 2016 Jan 20.

Children's Hospital Oakland Research Institute, 5700 Martin Luther King Jr. Way, Oakland, CA 94609, USA. Electronic address:

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http://dx.doi.org/10.1016/j.humimm.2016.01.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4828336PMC
March 2016

A new model for the origins of allelic dimorphism in Plasmodium falciparum.

Parasitol Int 2015 Jun 22;64(3):229-37. Epub 2014 Sep 22.

Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, Av. Prof. Lineu Prestes 1374, 05508-900 São Paulo, SP, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.parint.2014.09.008DOI Listing
June 2015

Ancient cis-regulatory constraints and the evolution of genome architecture.

Trends Genet 2013 Sep 18;29(9):521-8. Epub 2013 Jun 18.

The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1016/j.tig.2013.05.008DOI Listing
September 2013

Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans.

BMC Genomics 2012 Mar 22;13:109. Epub 2012 Mar 22.

CAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3353239PMC
March 2012

Numerous fragmented spliceosomal introns, AT-AC splicing, and an unusual dynein gene expression pathway in Giardia lamblia.

Mol Biol Evol 2012 Jan 11;29(1):43-9. Epub 2011 Apr 11.

Department of Biology, Stanford University, USA.

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http://dx.doi.org/10.1093/molbev/msr063DOI Listing
January 2012

Evolutionarily conserved A-to-I editing increases protein stability of the alternative splicing factor Nova1.

RNA Biol 2012 Jan 1;9(1):12-21. Epub 2012 Jan 1.

Departament de Genètica, Facultat de Biología, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.4161/rna.9.1.18387DOI Listing
January 2012

Sequence diversity and evolutionary dynamics of the dimorphic antigen merozoite surface protein-6 and other Msp genes of Plasmodium falciparum.

Gene 2009 Aug 20;443(1-2):12-21. Epub 2009 May 20.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1016/j.gene.2009.05.007DOI Listing
August 2009

Intronization, de-intronization and intron sliding are rare in Cryptococcus.

Authors:
Scott W Roy

BMC Evol Biol 2009 Aug 7;9:192. Epub 2009 Aug 7.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1186/1471-2148-9-192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2740785PMC
August 2009

Quantitative regulation of alternative splicing in evolution and development.

Bioessays 2009 Jan;31(1):40-50

Departament de Genètica, and Institut de Biomedicina (IBUB), Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1002/bies.080092DOI Listing
January 2009

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors.

Genome Biol 2007 ;8(10):R223

Department of Molecular Genetics and Microbiology, Center for Genome Technology, Institute for Genome Science and Policy, Duke University, Durham, NC 27710, USA.

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http://dx.doi.org/10.1186/gb-2007-8-10-r223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2246297PMC
May 2008

Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis.

Mol Biol Evol 2008 Feb 28;25(2):375-82. Epub 2007 Nov 28.

Departament de Genètica, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1093/molbev/msm262DOI Listing
February 2008

Coevolution of genomic intron number and splice sites.

Trends Genet 2007 Jul 18;23(7):321-5. Epub 2007 Apr 18.

Allan Wilson Centre for Molecular Evolution and Ecology, Massey University, Palmerston North, New Zealand.

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http://dx.doi.org/10.1016/j.tig.2007.04.001DOI Listing
July 2007

Intron-rich ancestors.

Authors:
Scott W Roy

Trends Genet 2006 Sep 20;22(9):468-71. Epub 2006 Jul 20.

Allan Wilson Centre, Massey University, Palmerston North, New Zealand.

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http://dx.doi.org/10.1016/j.tig.2006.07.002DOI Listing
September 2006

The origin of recent introns: transposons?

Authors:
Scott W Roy

Genome Biol 2004 29;5(12):251. Epub 2004 Nov 29.

Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1186/gb-2004-5-12-251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC545789PMC
October 2005

Complex early genes.

Proc Natl Acad Sci U S A 2005 Feb 1;102(6):1986-91. Epub 2005 Feb 1.

Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1073/pnas.0408355101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC548548PMC
February 2005

The pattern of intron loss.

Proc Natl Acad Sci U S A 2005 Jan 10;102(3):713-8. Epub 2005 Jan 10.

Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1073/pnas.0408274102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC545554PMC
January 2005

Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain.

Proc Natl Acad Sci U S A 2003 Jun 30;100(12):7158-62. Epub 2003 May 30.

Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1073/pnas.1232297100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165846PMC
June 2003