Scott T Magness

Scott T Magness

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Scott T Magness

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Quantitative classification of chromatin dynamics reveals regulators of intestinal stem cell differentiation.

Development 2020 Jan 3;147(1). Epub 2020 Jan 3.

Department of Genetics, University of North Carolina at Chapel Hill, NC 27599, USA

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http://dx.doi.org/10.1242/dev.181966DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6983707PMC
January 2020

A High-Throughput Organoid Microinjection Platform to Study Gastrointestinal Microbiota and Luminal Physiology.

Cell Mol Gastroenterol Hepatol 2018 22;6(3):301-319. Epub 2018 May 22.

Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill/North Carolina State University, Chapel Hill, North Carolina.

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http://dx.doi.org/10.1016/j.jcmgh.2018.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6092482PMC
July 2019

Quantitative Analysis of Intestinal Stem Cell Dynamics Using Microfabricated Cell Culture Arrays.

Methods Mol Biol 2018 ;1842:139-166

Department of Medicine, Center for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://link.springer.com/10.1007/978-1-4939-8697-2_10
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http://dx.doi.org/10.1007/978-1-4939-8697-2_10DOI Listing
April 2019

IL22 Inhibits Epithelial Stem Cell Expansion in an Ileal Organoid Model.

Cell Mol Gastroenterol Hepatol 2019 4;7(1):1-17. Epub 2018 Jul 4.

Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill/North Carolina State University, Chapel Hill, North Carolina; Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S2352345X183009
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http://dx.doi.org/10.1016/j.jcmgh.2018.06.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6199238PMC
April 2019

Preservation of reserve intestinal epithelial stem cells following severe ischemic injury.

Am J Physiol Gastrointest Liver Physiol 2019 04 4;316(4):G482-G494. Epub 2019 Feb 4.

Department of Clinical Sciences, College of Veterinary Medicine, North Carolina State University , Raleigh, North Carolina.

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http://dx.doi.org/10.1152/ajpgi.00262.2018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6483022PMC
April 2019

Interferon-λ3 Promotes Epithelial Defense and Barrier Function Against Cryptosporidium parvum Infection.

Cell Mol Gastroenterol Hepatol 2019 5;8(1):1-20. Epub 2019 Mar 5.

Department of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina; Comparative Medicine Institute, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina; Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina; Center for Gastrointestinal Biology and Disease, University of North Carolina, Chapel Hill, and North Carolina State University, Raleigh, North Carolina. Electronic address:

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http://dx.doi.org/10.1016/j.jcmgh.2019.02.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6510929PMC
March 2019

Organoid Cultures for Assessing Intestinal Epithelial Differentiation and Function in Response to Type-2 Inflammation.

Methods Mol Biol 2018 ;1799:397-417

Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1007/978-1-4939-7896-0_29DOI Listing
February 2019

Integrated phosphorescence-based photonic biosensor (iPOB) for monitoring oxygen levels in 3D cell culture systems.

Biosens Bioelectron 2019 Jan 21;123:131-140. Epub 2018 Jul 21.

Joint Department of Biomedical Engineering, North Carolina State University and University of North Carolina at Chapel Hill, 911 Oval Dr., Raleigh, NC 27695, USA; Department of Electrical & Computer Engineering, North Carolina State University, 890 Oval Dr., Raleigh, NC 27695, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09565663183053
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http://dx.doi.org/10.1016/j.bios.2018.07.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6376985PMC
January 2019

Knockout of ClC-2 reveals critical functions of adherens junctions in colonic homeostasis and tumorigenicity.

Am J Physiol Gastrointest Liver Physiol 2018 12 4;315(6):G966-G979. Epub 2018 Oct 4.

Department of Clinical Sciences, Center for Gastrointestinal Biology and Disease, College of Veterinary Medicine, North Carolina State University , Raleigh, North Carolina.

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https://www.physiology.org/doi/10.1152/ajpgi.00087.2018
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http://dx.doi.org/10.1152/ajpgi.00087.2018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336945PMC
December 2018

Sox4 Promotes Atoh1-Independent Intestinal Secretory Differentiation Toward Tuft and Enteroendocrine Fates.

Gastroenterology 2018 11 25;155(5):1508-1523.e10. Epub 2018 Jul 25.

Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill/North Carolina State University, Chapel Hill, North Carolina. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2018.07.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6232678PMC
November 2018

Reserve Stem Cells in Intestinal Homeostasis and Injury.

Gastroenterology 2018 11 15;155(5):1348-1361. Epub 2018 Aug 15.

Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Center for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Joint Departments of Biomedical Engineering, University of North Carolina at Chapel Hill/North Carolina State University, Chapel Hill, North Carolina; Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2018.08.016DOI Listing
November 2018

A Monolayer of Primary Colonic Epithelium Generated on a Scaffold with a Gradient of Stiffness for Drug Transport Studies.

Anal Chem 2018 11 30;90(22):13331-13340. Epub 2018 Oct 30.

Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States and North Carolina State University, Raleigh, North Carolina 27607, United States.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b02845
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http://dx.doi.org/10.1021/acs.analchem.8b02845DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6339567PMC
November 2018

Cftr Modulates Wnt/β-Catenin Signaling and Stem Cell Proliferation in Murine Intestine.

Cell Mol Gastroenterol Hepatol 2018 Mar 7;5(3):253-271. Epub 2017 Dec 7.

Department of Biomedical Sciences, University of Missouri, Columbia, Missouri.

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http://dx.doi.org/10.1016/j.jcmgh.2017.11.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904038PMC
March 2018

Bioengineered Systems and Designer Matrices That Recapitulate the Intestinal Stem Cell Niche.

Cell Mol Gastroenterol Hepatol 2018 Mar 17;5(3):440-453.e1. Epub 2018 Jan 17.

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina.

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http://dx.doi.org/10.1016/j.jcmgh.2018.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904029PMC
March 2018

Development of Arrayed Colonic Organoids for Screening of Secretagogues Associated with Enterotoxins.

Anal Chem 2018 02 12;90(3):1941-1950. Epub 2018 Jan 12.

Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University , Chapel Hill/Raleigh, North Carolina 27599/27607, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b04032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028038PMC
February 2018

Nonsteroidal Anti-Inflammatory Drug-Induced Leaky Gut Modeled Using Polarized Monolayers of Primary Human Intestinal Epithelial Cells.

ACS Infect Dis 2018 01 10;4(1):46-52. Epub 2017 Nov 10.

Department of Chemistry, University of North Carolina , 250 Bell Tower Drive, Chapel Hill, North Carolina 27599-3290, United States.

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http://dx.doi.org/10.1021/acsinfecdis.7b00139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013262PMC
January 2018

Generation of Mouse Colon Crypts.

ACS Biomater Sci Eng 2017 Oct 29;3(10):2502-2513. Epub 2017 Aug 29.

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599, United States.

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http://dx.doi.org/10.1021/acsbiomaterials.7b00368DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6402816PMC
October 2017

A microengineered collagen scaffold for generating a polarized crypt-villus architecture of human small intestinal epithelium.

Biomaterials 2017 06 6;128:44-55. Epub 2017 Mar 6.

Department of Chemistry, University of North Carolina, Chapel Hill, NC, 27599, USA; Department of Biomedical Engineering, University of North Carolina, Chapel Hill, NC, 27599, USA; North Carolina State University, Raleigh, NC, 27607, USA. Electronic address:

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http://dx.doi.org/10.1016/j.biomaterials.2017.03.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5392043PMC
June 2017

Impact of short-chain galactooligosaccharides on the gut microbiome of lactose-intolerant individuals.

Proc Natl Acad Sci U S A 2017 01 3;114(3):E367-E375. Epub 2017 Jan 3.

Department of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC 27695

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http://dx.doi.org/10.1073/pnas.1606722113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5255593PMC
January 2017

In Vitro Polarization of Colonoids to Create an Intestinal Stem Cell Compartment.

PLoS One 2016 21;11(4):e0153795. Epub 2016 Apr 21.

Department of Biomedical Engineering, University of North Carolina, Chapel Hill, NC 27599 and North Carolina State University, Raleigh, NC, 27695, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0153795PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4839657PMC
September 2016

Therapeutically engineered induced neural stem cells are tumour-homing and inhibit progression of glioblastoma.

Nat Commun 2016 Feb 2;7:10593. Epub 2016 Feb 2.

Division of Molecular Pharmaceutics, UNC Eshelman School of Pharmacy, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1038/ncomms10593DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4740908PMC
February 2016

SOX9 maintains reserve stem cells and preserves radioresistance in mouse small intestine.

Gastroenterology 2015 Nov 11;149(6):1553-1563.e10. Epub 2015 Jul 11.

Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00165085150094
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http://dx.doi.org/10.1053/j.gastro.2015.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709179PMC
November 2015

IGF1 stimulates crypt expansion via differential activation of 2 intestinal stem cell populations.

FASEB J 2015 Jul 2;29(7):2828-42. Epub 2015 Apr 2.

*Department of Cell Biology and Physiology, Department of Nutrition, Department of Surgery, and Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA; Department of Surgery, University of Cincinnati, Cincinnati, Ohio, USA; and University of North Carolina/North Carolina State Biomedical Engineering, Chapel Hill, North Carolina, USA

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http://www.fasebj.org/content/early/2015/04/02/fj.14-264010.
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http://www.fasebj.org/cgi/doi/10.1096/fj.14-264010
Publisher Site
http://dx.doi.org/10.1096/fj.14-264010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4478798PMC
July 2015

A high-throughput platform for stem cell niche co-cultures and downstream gene expression analysis.

Nat Cell Biol 2015 Mar 9;17(3):340-9. Epub 2015 Feb 9.

1] Department of Cell Biology &Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA [2] Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA [3] UNC/NC State Biomedical Engineering, Chapel Hill North Carolina 27599, USA.

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http://dx.doi.org/10.1038/ncb3104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405128PMC
March 2015

Impact of diet-induced obesity on intestinal stem cells: hyperproliferation but impaired intrinsic function that requires insulin/IGF1.

Endocrinology 2014 Sep 10;155(9):3302-14. Epub 2014 Jun 10.

Departments of Nutrition (A.T.M.), Cell Biology and Physiology (L.V.L., S.T.M., P.K.L.), and Chemistry (H.E.G.), University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599.

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http://dx.doi.org/10.1210/en.2014-1112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138564PMC
September 2014

In vitro generation of colonic epithelium from primary cells guided by microstructures.

Lab Chip 2014 May 20;14(9):1622-31. Epub 2014 Mar 20.

Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1039/c3lc51353jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4037563PMC
May 2014

Optimization of 3-D organotypic primary colonic cultures for organ-on-chip applications.

J Biol Eng 2014 1;8. Epub 2014 Apr 1.

Department of Biomedical Engineering, University of North Carolina, Chapel Hill, NC, 27599 and North Carolina State University, Raleigh, NC 27695, USA ; Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://jbioleng.biomedcentral.com/articles/10.1186/1754-1611
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http://dx.doi.org/10.1186/1754-1611-8-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4022271PMC
May 2014

Cell lineage identification and stem cell culture in a porcine model for the study of intestinal epithelial regeneration.

PLoS One 2013 28;8(6):e66465. Epub 2013 Jun 28.

Center for Comparative Medicine and Translational Research, North Carolina State University, Raleigh, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0066465PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3696067PMC
January 2014

Capture and 3D culture of colonic crypts and colonoids in a microarray platform.

Lab Chip 2013 Dec;13(23):4625-34

Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1039/c3lc50813gDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3841105PMC
December 2013

Brief report: CD24 and CD44 mark human intestinal epithelial cell populations with characteristics of active and facultative stem cells.

Stem Cells 2013 Sep;31(9):2024-30

Department of Medicine Division of Gastroenterology and Hepatology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA; Department of Cell Biology and Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1002/stem.1391DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3783577PMC
September 2013

Mucosal healing and fibrosis after acute or chronic inflammation in wild type FVB-N mice and C57BL6 procollagen α1(I)-promoter-GFP reporter mice.

PLoS One 2012 3;7(8):e42568. Epub 2012 Aug 3.

Department of Cell and Molecular Physiology, the University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042568PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3411826PMC
January 2013

Restriction of intestinal stem cell expansion and the regenerative response by YAP.

Nature 2013 Jan 25;493(7430):106-10. Epub 2012 Nov 25.

Stem Cell Program and Department of Hematology/Oncology, Children's Hospital, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nature11693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536889PMC
January 2013

A nomenclature for intestinal in vitro cultures.

Am J Physiol Gastrointest Liver Physiol 2012 Jun 29;302(12):G1359-63. Epub 2012 Mar 29.

UCLA/VA Greater Los Angeles, 11301 Wilshire Blvd. (10H2) Los Angeles, CA 90073, USA.

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http://dx.doi.org/10.1152/ajpgi.00493.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3378093PMC
June 2012

Activation of two distinct Sox9-EGFP-expressing intestinal stem cell populations during crypt regeneration after irradiation.

Am J Physiol Gastrointest Liver Physiol 2012 May 23;302(10):G1111-32. Epub 2012 Feb 23.

Department of Cellular and Molecular Physiology, University of North Carolina, Chapel Hill, NC 27599-7545, USA.

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http://dx.doi.org/10.1152/ajpgi.00519.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362093PMC
May 2012

Sorting mouse jejunal epithelial cells with CD24 yields a population with characteristics of intestinal stem cells.

Am J Physiol Gastrointest Liver Physiol 2011 Mar 23;300(3):G409-17. Epub 2010 Dec 23.

Dept. of Medicine, University of North Carolina at Chapel Hill, 27599-7555, USA.

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http://dx.doi.org/10.1152/ajpgi.00453.2010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3064119PMC
March 2011

Sox9 expression marks a subset of CD24-expressing small intestine epithelial stem cells that form organoids in vitro.

Am J Physiol Gastrointest Liver Physiol 2010 May 25;298(5):G590-600. Epub 2010 Feb 25.

Department of Medicine, University of North Carolina at Chapel Hill, USA.

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http://dx.doi.org/10.1152/ajpgi.00470.2009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2867430PMC
May 2010

Distinct SOX9 levels differentially mark stem/progenitor populations and enteroendocrine cells of the small intestine epithelium.

Am J Physiol Gastrointest Liver Physiol 2009 May 19;296(5):G1108-18. Epub 2009 Feb 19.

Department of Medicine, Division of Gastroenterology and Hepatology, University of North Carolina at Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1152/ajpgi.00004.2009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2696217PMC
May 2009

Insulin receptor substrate-1 deficiency promotes apoptosis in the putative intestinal crypt stem cell region, limits Apcmin/+ tumors, and regulates Sox9.

Endocrinology 2008 Jan 4;149(1):261-7. Epub 2007 Oct 4.

Department of Cell and Molecular Physiology, University of North Carolina at Chapel Hill, North Carolina 27599-7545, USA. or

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http://dx.doi.org/10.1210/en.2007-0869DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2194604PMC
January 2008

Gnotobiotic IL-10-/-;NF-kappa B(EGFP) mice reveal the critical role of TLR/NF-kappa B signaling in commensal bacteria-induced colitis.

J Immunol 2007 May;178(10):6522-32

Department of Medicine and Center for Gastrointestinal Biology and Disease, University of North Carolina, Chapel Hill, NC 27510, USA.

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http://dx.doi.org/10.4049/jimmunol.178.10.6522DOI Listing
May 2007

SOX2 is a dose-dependent regulator of retinal neural progenitor competence.

Genes Dev 2006 May;20(9):1187-202

Department of Genetics, University of North Carolina at Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1101/gad.1407906DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1472477PMC
May 2006

NF-kappaB activation in Kupffer cells after partial hepatectomy.

Am J Physiol Gastrointest Liver Physiol 2005 Sep 19;289(3):G530-8. Epub 2005 May 19.

Dept. of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1152/ajpgi.00526.2004DOI Listing
September 2005

SOX2, a persistent marker for multipotential neural stem cells derived from embryonic stem cells, the embryo or the adult.

Dev Neurosci 2004 Mar-Aug;26(2-4):148-65

Neuroscience Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1159/000082134DOI Listing
April 2005

A dual reporter gene transgenic mouse demonstrates heterogeneity in hepatic fibrogenic cell populations.

Hepatology 2004 Nov;40(5):1151-9

University of North Carolina at Chapel Hill, Department of Medicine, USA.

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http://dx.doi.org/10.1002/hep.20427DOI Listing
November 2004

An exon 10 deletion in the mouse ferrochelatase gene has a dominant-negative effect and causes mild protoporphyria.

Blood 2002 Aug;100(4):1470-7

Department of Medicine, University of North Carolina at Chapel Hill 27599, USA.

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http://dx.doi.org/10.1182/blood-2001-12-0283DOI Listing
August 2002