Scott Sherrill-Mix

Scott Sherrill-Mix

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Scott Sherrill-Mix

Scott Sherrill-Mix

Publications by authors named "Scott Sherrill-Mix"

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30Publications

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Virus structures constrain transmission modes.

Nat Microbiol 2019 11 29;4(11):1778-1780. Epub 2019 Jul 29.

Department of Microbiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.

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http://dx.doi.org/10.1038/s41564-019-0523-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814542PMC
November 2019

Guidelines for Genome-Scale Analysis of Biological Rhythms.

J Biol Rhythms 2017 Oct 3;32(5):380-393. Epub 2017 Nov 3.

27 Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.

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http://dx.doi.org/10.1177/0748730417728663DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5692188PMC
October 2017

Optimizing methods and dodging pitfalls in microbiome research.

Microbiome 2017 05 5;5(1):52. Epub 2017 May 5.

Division of Gastroenterology, Hepatology, and Nutrition, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, 19104, USA.

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http://dx.doi.org/10.1186/s40168-017-0267-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5420141PMC
May 2017

Associations of the vaginal microbiota with HIV infection, bacterial vaginosis, and demographic factors.

AIDS 2017 04;31(7):895-904

aDepartment of Microbiology, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania bDepartment of Cellular and Molecular Biology, Feinberg School of Medicine, Northwestern University cCORE Center, Stroger Hospital of Cook County, Chicago, Illinois, USA.

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http://dx.doi.org/10.1097/QAD.0000000000001421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5370567PMC
April 2017

Structural Basis for Inhibitor-Induced Aggregation of HIV Integrase.

PLoS Biol 2016 Dec 9;14(12):e1002584. Epub 2016 Dec 9.

Department of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002584DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5147827PMC
December 2016

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota.

Microbiome 2016 Jun 23;4(1):29. Epub 2016 Jun 23.

Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA, 19104-6076, USA.

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http://dx.doi.org/10.1186/s40168-016-0172-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4917942PMC
June 2016

A reverse transcription loop-mediated isothermal amplification assay optimized to detect multiple HIV subtypes.

PLoS One 2015 12;10(2):e0117852. Epub 2015 Feb 12.

Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117852PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326360PMC
November 2015

Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats.

Retrovirology 2015 Sep 17;12:79. Epub 2015 Sep 17.

Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, 425 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA, 19104, USA.

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http://dx.doi.org/10.1186/s12977-015-0205-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574318PMC
September 2015

Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA.

Bioinformatics 2015 Aug 29;31(15):2461-8. Epub 2015 Mar 29.

Department of Biostatistics and Epidemiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514928PMC
August 2015

Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9.

mBio 2015 Jun 16;6(3):e00648. Epub 2015 Jun 16.

Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, USA

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http://dx.doi.org/10.1128/mBio.00648-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4471564PMC
June 2015

Phylogeography and molecular epidemiology of an epidemic strain of dengue virus type 1 in Sri Lanka.

Am J Trop Med Hyg 2014 Aug 5;91(2):225-34. Epub 2014 May 5.

University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania; Genetech Research Institute, Colombo, Sri Lanka; North Colombo Teaching Hospital, Ragama, Sri Lanka; Department of Zoology, University of Colombo, Colombo, Sri Lanka; Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, California

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http://dx.doi.org/10.4269/ajtmh.13-0523DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4125241PMC
August 2014

Hepatitis C virus transmission bottlenecks analyzed by deep sequencing.

J Virol 2010 Jun 7;84(12):6218-28. Epub 2010 Apr 7.

University of Pennsylvania School of Medicine, Department of Microbiology, 3610 Hamilton Walk, Philadelphia, PA 19104-6076, USA.

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http://dx.doi.org/10.1128/JVI.02271-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2876626PMC
June 2010

HIV sequence variation associated with env antisense adoptive T-cell therapy in the hNSG mouse model.

Mol Ther 2010 Apr 26;18(4):803-11. Epub 2010 Jan 26.

Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1038/mt.2009.316DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862538PMC
April 2010

High-fat diet determines the composition of the murine gut microbiome independently of obesity.

Gastroenterology 2009 Nov 23;137(5):1716-24.e1-2. Epub 2009 Aug 23.

Division of Gastroenterology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1053/j.gastro.2009.08.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2770164PMC
November 2009