Scott Federhen

Scott Federhen

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Scott Federhen

Scott Federhen

Publications by authors named "Scott Federhen"

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Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi.

Authors:
Conrad L Schoch Barbara Robbertse Vincent Robert Duong Vu Gianluigi Cardinali Laszlo Irinyi Wieland Meyer R Henrik Nilsson Karen Hughes Andrew N Miller Paul M Kirk Kessy Abarenkov M Catherine Aime Hiran A Ariyawansa Martin Bidartondo Teun Boekhout Bart Buyck Qing Cai Jie Chen Ana Crespo Pedro W Crous Ulrike Damm Z Wilhelm De Beer Bryn T M Dentinger Pradeep K Divakar Margarita Dueñas Nicolas Feau Katerina Fliegerova Miguel A García Zai-Wei Ge Gareth W Griffith Johannes Z Groenewald Marizeth Groenewald Martin Grube Marieka Gryzenhout Cécile Gueidan Liangdong Guo Sarah Hambleton Richard Hamelin Karen Hansen Valérie Hofstetter Seung-Beom Hong Jos Houbraken Kevin D Hyde Patrik Inderbitzin Peter R Johnston Samantha C Karunarathna Urmas Kõljalg Gábor M Kovács Ekaphan Kraichak Krisztina Krizsan Cletus P Kurtzman Karl-Henrik Larsson Steven Leavitt Peter M Letcher Kare Liimatainen Jian-Kui Liu D Jean Lodge Janet Jennifer Luangsa-ard H Thorsten Lumbsch Sajeewa S N Maharachchikumbura Dimuthu Manamgoda María P Martín Andrew M Minnis Jean-Marc Moncalvo Giuseppina Mulè Karen K Nakasone Tuula Niskanen Ibai Olariaga Tamás Papp Tamás Petkovits Raquel Pino-Bodas Martha J Powell Huzefa A Raja Dirk Redecker J M Sarmiento-Ramirez Keith A Seifert Bhushan Shrestha Soili Stenroos Benjamin Stielow Sung-Oui Suh Kazuaki Tanaka Leho Tedersoo M Teresa Telleria Dhanushka Udayanga Wendy A Untereiner Javier Diéguez Uribeondo Krishna V Subbarao Csaba Vágvölgyi Cobus Visagie Kerstin Voigt Donald M Walker Bevan S Weir Michael Weiß Nalin N Wijayawardene Michael J Wingfield J P Xu Zhu L Yang Ning Zhang Wen-Ying Zhuang Scott Federhen

Database (Oxford) 2014 30;2014. Epub 2014 Jun 30.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands, Department of Pharmaceutical Sciences - Microbiology, Università degli Studi di Perugia, Perugia, Italy, Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, The University of Sydney, Westmead Millennium Institute, Westmead, Australia, Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden, Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37920, USA, Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA, Mycology Section, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK, Natural History Museum, University of Tartu, 46 Vanemuise, 51014 Tartu, Estonia, Purdue University, Department of Botany and Plant Pathology, 915 W. State Street, West Lafayette, IN 47907, USA, Institute of Excellence in Fungal Research, and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand, Imperial College London, Royal Botanic Gardens, Kew TW9 3DS, England, UK, Muséum National d'Histoire Naturelle, Dépt. Systématique et Evolution CP39, UMR7205, 12 Rue Buffon, F-75005 Paris, France, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, P. R. China, Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid 28040, Spain, Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany, Department of Microbiology and Plant Pathology, Forestry Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa, Real Jardín Botánico, RJB-CSIC,

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http://dx.doi.org/10.1093/database/bau061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4075928PMC
February 2015

Type material in the NCBI Taxonomy Database.

Authors:
Scott Federhen

Nucleic Acids Res 2015 Jan 14;43(Database issue):D1086-98. Epub 2014 Nov 14.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA

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http://dx.doi.org/10.1093/nar/gku1127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383940PMC
January 2015

Update on RefSeq microbial genomes resources.

Nucleic Acids Res 2015 Jan 15;43(Database issue):D599-605. Epub 2014 Dec 15.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gku1062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383903PMC
January 2015

Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.

Stand Genomic Sci 2014 Jun 29;9(3):1275-7. Epub 2014 Jan 29.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.4056/sigs.4851102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149001PMC
June 2014

The NCBI Taxonomy database.

Authors:
Scott Federhen

Nucleic Acids Res 2012 Jan 1;40(Database issue):D136-43. Epub 2011 Dec 1.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkr1178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245000PMC
January 2012

Comment on 'Birdstrikes and barcoding: can DNA methods help make the airways safer?'.

Authors:
Scott Federhen

Mol Ecol Resour 2011 Nov 8;11(6):937-8; discussion 939-42. Epub 2011 Sep 8.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1111/j.1755-0998.2011.03054.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224856PMC
November 2011

National center for biotechnology information viral genomes project.

J Virol 2004 Jul;78(14):7291-8

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1128/JVI.78.14.7291-7298.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC434121PMC
July 2004

Database resources of the National Center for Biotechnology Information: update.

Nucleic Acids Res 2004 Jan;32(Database issue):D35-40

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkh073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308807PMC
January 2004

Discovering simple regions in biological sequences associated with scoring schemes.

J Comput Biol 2003 ;10(2):171-85

National Center for Genome Resources, Santa Fe, NM 87505, USA.

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http://dx.doi.org/10.1089/106652703321825955DOI Listing
July 2003

Database resources of the National Center for Biotechnology.

Nucleic Acids Res 2003 Jan;31(1):28-33

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165480PMC
http://dx.doi.org/10.1093/nar/gkg033DOI Listing
January 2003