Saurabh Baheti

Saurabh Baheti

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Saurabh Baheti

Saurabh Baheti

Publications by authors named "Saurabh Baheti"

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34Publications

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HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.

BMC Bioinformatics 2018 07 17;19(1):271. Epub 2018 Jul 17.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://dx.doi.org/10.1186/s12859-018-2260-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6050683PMC
July 2018

Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data.

Brief Bioinform 2018 05;19(3):374-386

Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN.

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http://dx.doi.org/10.1093/bib/bbw133DOI Listing
May 2018

Adipose tissue DNA methylome changes in development of new-onset diabetes after kidney transplantation.

Epigenomics 2017 11 2;9(11):1423-1435. Epub 2017 Oct 2.

Divisions of Nephrology & Hypertension, Mayo Clinic, Arizona, AZ, USA.

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http://dx.doi.org/10.2217/epi-2017-0050DOI Listing
November 2017

DNA methylation profiling: comparison of genome-wide sequencing methods and the Infinium Human Methylation 450 Bead Chip.

Epigenomics 2015 20;7(8):1287-302. Epub 2015 Jul 20.

Medical Genome Facility, Mayo Clinic, 200, 1st St, SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.2217/EPI.15.64DOI Listing
October 2016

Target-enrichment sequencing and copy number evaluation in inherited polyneuropathy.

Neurology 2016 05 13;86(19):1762-71. Epub 2016 Apr 13.

From the Departments of Neurology, Peripheral Nerve Division (W.W., P.J.D., C.J.K.), Department of Health Science Research (C.W., S.B., J.M.E.), Laboratory Medicine and Pathology (D.B.D., E.C.T., P.A.L., Y.W., C.J.K.), Medical Genome Facility (B.W.E., Y.W.), and Medical Genetics (C.J.K., D.B.D.), Mayo Clinic, Rochester, MN; Department of Neurology (W.W.), China-Japan Friendship Hospital, Beijing, China; and Department of Neurology (S.S.S.), Perelman School of Medicine, University of Pennsylvania, Philadelphia.

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http://dx.doi.org/10.1212/WNL.0000000000002659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4862246PMC
May 2016

Identification of differentially methylated regions in new genes associated with knee osteoarthritis.

Gene 2016 Jan 17;576(1 Pt 2):312-8. Epub 2015 Oct 17.

Department of Orthopedic Surgery, Mayo Clinic, Rochester, MN, United States; Department of Biochemistry & Molecular Biology, Mayo Clinic, Rochester, MN, United States. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2015.10.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679536PMC
January 2016

RVboost: RNA-seq variants prioritization using a boosting method.

Bioinformatics 2014 Dec 27;30(23):3414-6. Epub 2014 Aug 27.

Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester MN 55905, Department of Health Sciences Research, Mayo Clinic, 4500 San Pablo Road South, Jacksonville FL 32224, Department of Laboratory Medicine and Pathology, Division of Hematology, Department of Internal Medicine, Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester MN 55905 and Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road South, Jacksonville FL 32224, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296157PMC
December 2014

From days to hours: reporting clinically actionable variants from whole genome sequencing.

PLoS One 2014 5;9(2):e86803. Epub 2014 Feb 5.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086803PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3914798PMC
November 2014

SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations.

PLoS One 2013 16;8(12):e83356. Epub 2013 Dec 16.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0083356PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865185PMC
October 2014

Aberrant signature methylome by DNMT1 hot spot mutation in hereditary sensory and autonomic neuropathy 1E.

Epigenetics 2014 Aug 7;9(8):1184-93. Epub 2014 Jul 7.

Department of Laboratory Medicine and Pathology; Mayo Clinic; Rochester, MN USA; Department of Neurology; Mayo Clinic; Rochester, MN USA; Department of Medical Genetics; Mayo Clinic; Rochester, MN USA.

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http://dx.doi.org/10.4161/epi.29676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4164503PMC
August 2014

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

Bioinformatics 2012 Aug 10;28(16):2180-1. Epub 2012 Jun 10.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413387PMC
August 2012