Publications by authors named "Saskia Hiltemann"

18Publications

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.

Gigascience 2020 Oct;9(10)

Department of Pathology, Clinical Bioinformatics Unit, Erasmus University Medical Centre, Wytemaweg 80, 3015 CN, Rotterdam, the Netherlands.

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http://dx.doi.org/10.1093/gigascience/giaa105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7568507PMC
October 2020

Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.

Genes (Basel) 2020 Sep 21;11(9). Epub 2020 Sep 21.

Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands.

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http://dx.doi.org/10.3390/genes11091105DOI Listing
September 2020

Galactic Circos: User-friendly Circos plots within the Galaxy platform.

Gigascience 2020 Jun;9(6)

Erasmus Medical Center, Clinical Bioinformatics Group, Department of Pathology, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1093/gigascience/giaa065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7291503PMC
June 2020

Galaxy mothur Toolset (GmT): a user-friendly application for 16S rRNA gene sequencing analysis using mothur.

Gigascience 2019 02;8(2)

Erasmus University Medical Center Rotterdam, Department of Pathology, Bioinformatics group, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.

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https://academic.oup.com/gigascience/article/doi/10.1093/gig
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http://dx.doi.org/10.1093/gigascience/giy166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6377400PMC
February 2019

ASaiM: a Galaxy-based framework to analyze microbiota data.

Gigascience 2018 06;7(6)

Université Clermont Auvergne, EA 4678 CIDAM, 63000 Clermont-Ferrand, France (previous address).

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http://dx.doi.org/10.1093/gigascience/giy057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007547PMC
June 2018

Development and evaluation of a culture-free microbiota profiling platform (MYcrobiota) for clinical diagnostics.

Eur J Clin Microbiol Infect Dis 2018 Jun 16;37(6):1081-1089. Epub 2018 Mar 16.

Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre Rotterdam (Erasmus MC), Wytemaweg 80, 3015 CN, Rotterdam, the Netherlands.

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http://dx.doi.org/10.1007/s10096-018-3220-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5948305PMC
June 2018

FuMa: reporting overlap in RNA-seq detected fusion genes.

Bioinformatics 2016 04 10;32(8):1226-8. Epub 2015 Dec 10.

Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, 3000 CA, The Netherlands.

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http://dx.doi.org/10.1093/bioinformatics/btv721DOI Listing
April 2016

Discriminating somatic and germline mutations in tumor DNA samples without matching normals.

Genome Res 2015 Sep 24;25(9):1382-90. Epub 2015 Jul 24.

Department of Bioinformatics, Erasmus University Medical Center, Rotterdam 3015 CN, The Netherlands;

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http://dx.doi.org/10.1101/gr.183053.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4561496PMC
September 2015

iReport: a generalised Galaxy solution for integrated experimental reporting.

Gigascience 2014 13;3:19. Epub 2014 Oct 13.

Department of Bioinformatics, Erasmus Medical Center, Wytemaweg 80, 3015 CN Rotterdam, The Netherlands.

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http://dx.doi.org/10.1186/2047-217X-3-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4220639PMC
November 2014

CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy.

Gigascience 2014 Jan 24;3(1). Epub 2014 Jan 24.

Department of Bioinformatics, Erasmus MC, Dr, Molewaterplein 5, 3015 GE Rotterdam, The Netherlands.

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http://dx.doi.org/10.1186/2047-217X-3-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905657PMC
January 2014

iFUSE: integrated fusion gene explorer.

Bioinformatics 2013 Jul 9;29(13):1700-1. Epub 2013 May 9.

Department of Urology, Erasmus MC, 3015 GE Rotterdam, The Netherlands.

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http://dx.doi.org/10.1093/bioinformatics/btt252DOI Listing
July 2013

Gene fusions by chromothripsis of chromosome 5q in the VCaP prostate cancer cell line.

Hum Genet 2013 Jun 25;132(6):709-13. Epub 2013 Apr 25.

Department of Urology, Josephine Nefkens Institute, Erasmus University Medical Center, Be 362a, P.O. Box 2040, 3000 CA, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1007/s00439-013-1308-1DOI Listing
June 2013