Sarah K Young

COVID-19 and telepsychiatry: Early outpatient experiences and implications for the future.

Authors:

Justin A Chen Wei-Jean Chung Sarah K Young Margaret C Tuttle Michelle B Collins Sarah L Darghouth Regina Longley Raymond Levy Mahdi Razafsha Jeffrey C Kerner Janet Wozniak Jeff C Huffman

Gen Hosp Psychiatry 2020 Sep - Oct;66:89-95. Epub 2020 Jul 9.

Department of Psychiatry, Massachusetts General Hospital, Boston, MA, USA; Harvard Medical School, Boston, MA, USA.

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September 2020

Transmission of human-associated microbiota along family and social networks.

Authors:

Ilana L Brito Thomas Gurry Shijie Zhao Katherine Huang Sarah K Young Terrence P Shea Waisea Naisilisili Aaron P Jenkins Stacy D Jupiter Dirk Gevers Eric J Alm

Nat Microbiol 2019 06 25;4(6):964-971. Epub 2019 Mar 25.

Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.

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June 2019

Structure of the germline genome of and relationship to the massively rearranged somatic genome.

Elife 2016 11 28;5. Epub 2016 Nov 28.

J. Craig Venter Institute, Rockville, United States.

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November 2016

Erratum to: Comparative genomics and transcriptomics of Pichia pastoris.

Authors:

Kerry R Love Kartik A Shah Charles A Whittaker Jie Wu M Catherine Bartlett Duanduan Ma Rachel L Leeson Margaret Priest Jonathan Borowsky Sarah K Young J Christopher Love

BMC Genomics 2016 09 28;17(1):762. Epub 2016 Sep 28.

Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 76-253, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.

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September 2016

Comparative genomics and transcriptomics of Pichia pastoris.

Authors:

Kerry R Love Kartik A Shah Charles A Whittaker Jie Wu M Catherine Bartlett Duanduan Ma Rachel L Leeson Margaret Priest Jonathan Borowsky Sarah K Young J Christopher Love

BMC Genomics 2016 08 5;17:550. Epub 2016 Aug 5.

Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 76-253, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.

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August 2016

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.

PLoS Med 2015 Sep 29;12(9):e1001880. Epub 2015 Sep 29.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.

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September 2015

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:

Bruce J Walker Thomas Abeel Terrance Shea Margaret Priest Amr Abouelliel Sharadha Sakthikumar Christina A Cuomo Qiandong Zeng Jennifer Wortman Sarah K Young Ashlee M Earl

PLoS One 2014 19;9(11):e112963. Epub 2014 Nov 19.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.

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July 2015

Draft genome sequences of six enterohepatic helicobacter species isolated from humans and one from rhesus macaques.

Authors:

Zeli Shen Alexander Sheh Sarah K Young Amr Abouelliel Doyle V Ward Ashlee M Earl James G Fox

Genome Announc 2014 Sep 11;2(5). Epub 2014 Sep 11.

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September 2014

Evolutionary dynamics of the accessory genome of Listeria monocytogenes.

Authors:

Henk C den Bakker Christopher A Desjardins Allison D Griggs Joseph E Peters Qiandong Zeng Sarah K Young Chinnappa D Kodira Chandri Yandava Theresa A Hepburn Brian J Haas Bruce W Birren Martin Wiedmann

PLoS One 2013 25;8(6):e67511. Epub 2013 Jun 25.

Department of Food Science, Cornell University, Ithaca, New York, United States of America.

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February 2014

Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica.

PLoS Genet 2013 Jun 13;9(6):e1003272. Epub 2013 Jun 13.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.

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June 2013

Linkage to the mating-type locus across the genus Microbotryum: insights into nonrecombining chromosomes.

Authors:

Elsa Petit Tatiana Giraud Damien M de Vienne Marco A Coelho Gabriela Aguileta Joëlle Amselem Jonathan Kreplak Julie Poulain Frédérick Gavory Patrick Wincker Sarah K Young Christina Cuomo Michael H Perlin Michael E Hood

Evolution 2012 Nov 26;66(11):3519-33. Epub 2012 Jun 26.

Department of Biology, Amherst College, Amherst, Massachusetts 01002, USA.

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November 2012

Finished bacterial genomes from shotgun sequence data.

Authors:

Filipe J Ribeiro Dariusz Przybylski Shuangye Yin Ted Sharpe Sante Gnerre Amr Abouelleil Aaron M Berlin Anna Montmayeur Terrance P Shea Bruce J Walker Sarah K Young Carsten Russ Chad Nusbaum Iain MacCallum David B Jaffe

Genome Res 2012 Nov 24;22(11):2270-7. Epub 2012 Jul 24.

Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.

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November 2012

Paired-end sequencing of Fosmid libraries by Illumina.

Authors:

Louise J S Williams Diana G Tabbaa Na Li Aaron M Berlin Terrance P Shea Iain Maccallum Michael S Lawrence Yotam Drier Gad Getz Sarah K Young David B Jaffe Chad Nusbaum Andreas Gnirke

Genome Res 2012 Nov 16;22(11):2241-9. Epub 2012 Jul 16.

Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA.

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November 2012

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.

PLoS Pathog 2012 8;8(3):e1002529. Epub 2012 Mar 8.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

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July 2012

Comparative functional genomics of the fission yeasts.

Authors:

Nicholas Rhind Zehua Chen Moran Yassour Dawn A Thompson Brian J Haas Naomi Habib Ilan Wapinski Sushmita Roy Michael F Lin David I Heiman Sarah K Young Kanji Furuya Yabin Guo Alison Pidoux Huei Mei Chen Barbara Robbertse Jonathan M Goldberg Keita Aoki Elizabeth H Bayne Aaron M Berlin Christopher A Desjardins Edward Dobbs Livio Dukaj Lin Fan Michael G FitzGerald Courtney French Sharvari Gujja Klavs Hansen Dan Keifenheim Joshua Z Levin Rebecca A Mosher Carolin A Müller Jenna Pfiffner Margaret Priest Carsten Russ Agata Smialowska Peter Swoboda Sean M Sykes Matthew Vaughn Sonya Vengrova Ryan Yoder Qiandong Zeng Robin Allshire David Baulcombe Bruce W Birren William Brown Karl Ekwall Manolis Kellis Janet Leatherwood Henry Levin Hanah Margalit Rob Martienssen Conrad A Nieduszynski Joseph W Spatafora Nir Friedman Jacob Z Dalgaard Peter Baumann Hironori Niki Aviv Regev Chad Nusbaum

Science 2011 May 21;332(6032):930-6. Epub 2011 Apr 21.

Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, USA.

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May 2011

Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate.

Authors:

Rosanna A Alegado Steven Ferriera Chad Nusbaum Sarah K Young Qian Zeng Alma Imamovic Stephen R Fairclough Nicole King

J Bacteriol 2011 Mar 23;193(6):1485-6. Epub 2010 Dec 23.

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3200, USA.

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March 2011

Analysis of high-throughput sequencing and annotation strategies for phage genomes.

Authors:

Matthew R Henn Matthew B Sullivan Nicole Stange-Thomann Marcia S Osburne Aaron M Berlin Libusha Kelly Chandri Yandava Chinnappa Kodira Qiandong Zeng Michael Weiand Todd Sparrow Sakina Saif Georgia Giannoukos Sarah K Young Chad Nusbaum Bruce W Birren Sallie W Chisholm

PLoS One 2010 Feb 5;5(2):e9083. Epub 2010 Feb 5.

The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.

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February 2010

Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment-naïve patients.

Hepatology 2008 Dec;48(6):1769-78

Partners AIDS Research Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

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December 2008

Short-term genome evolution of Listeria monocytogenes in a non-controlled environment.

Authors:

Renato H Orsi Mark L Borowsky Peter Lauer Sarah K Young Chad Nusbaum James E Galagan Bruce W Birren Reid A Ivy Qi Sun Lewis M Graves Bala Swaminathan Martin Wiedmann

BMC Genomics 2008 Nov 13;9:539. Epub 2008 Nov 13.

Department of Food Science, Cornell University, Ithaca, NY, USA.

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November 2008

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.

Authors:

Michael C Zody Manuel Garber David J Adams Ted Sharpe Jennifer Harrow James R Lupski Christine Nicholson Steven M Searle Laurens Wilming Sarah K Young Amr Abouelleil Nicole R Allen Weimin Bi Toby Bloom Mark L Borowsky Boris E Bugalter Jonathan Butler Jean L Chang Chao-Kung Chen April Cook Benjamin Corum Christina A Cuomo Pieter J de Jong David DeCaprio Ken Dewar Michael FitzGerald James Gilbert Richard Gibson Sante Gnerre Steven Goldstein Darren V Grafham Russell Grocock Nabil Hafez Daniel S Hagopian Elizabeth Hart Catherine Hosage Norman Sean Humphray David B Jaffe Matt Jones Michael Kamal Varsha K Khodiyar Kurt LaButti Gavin Laird Jessica Lehoczky Xiaohong Liu Tashi Lokyitsang Jane Loveland Annie Lui Pendexter Macdonald John E Major Lucy Matthews Evan Mauceli Steven A McCarroll Atanas H Mihalev Jonathan Mudge Cindy Nguyen Robert Nicol Sinéad B O'Leary Kazutoyo Osoegawa David C Schwartz Charles Shaw-Smith Pawel Stankiewicz Charles Steward David Swarbreck Vijay Venkataraman Charles A Whittaker Xiaoping Yang Andrew R Zimmer Allan Bradley Tim Hubbard Bruce W Birren Jane Rogers Eric S Lander Chad Nusbaum

Nature 2006 Apr;440(7087):1045-9

Broad Institute of MIT and Harvard, 7 Cambridge Center, Massachusetts 02142, USA.

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April 2006

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