Sarah Highlander

Sarah Highlander

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Sarah Highlander

Sarah Highlander

Publications by authors named "Sarah Highlander"

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Host Genetic Control of the Oral Microbiome in Health and Disease.

Cell Host Microbe 2017 Sep;22(3):269-278.e3

Departments of Human Biology and Genomic Medicine, J. Craig Venter Institute, La Jolla, CA 92037, USA; Departments of Human Biology and Genomic Medicine, J. Craig Venter Institute, Rockville, MD 20850, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2017.08.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5733791PMC
September 2017

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system.

PeerJ 2016 28;4:e1869. Epub 2016 Mar 28.

Department of Genomic Medicine, J. Craig Venter Institute , La Jolla, CA , USA.

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http://dx.doi.org/10.7717/peerj.1869DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824876PMC
April 2016

Molecular and evolutionary analysis of NEAr-iron Transporter (NEAT) domains.

PLoS One 2014 25;9(8):e104794. Epub 2014 Aug 25.

Genomic Medicine, The J. Craig Venter Institute, La Jolla, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0104794PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143258PMC
May 2015

From prediction to function using evolutionary genomics: human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions.

Genome Biol Evol 2014 Jun 19;6(7):1772-89. Epub 2014 Jun 19.

Department of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, TXHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TXPresent address: Genomic Medicine, J. Craig Venter Institute, La Jolla, CA.

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http://dx.doi.org/10.1093/gbe/evu137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4122935PMC
June 2014

Phylogenomics and the dynamic genome evolution of the genus Streptococcus.

Genome Biol Evol 2014 Apr;6(4):741-53

Department of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University.

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http://dx.doi.org/10.1093/gbe/evu048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4007547PMC
April 2014

Development and accuracy of quantitative real-time polymerase chain reaction assays for detection and quantification of enterotoxigenic Escherichia coli (ETEC) heat labile and heat stable toxin genes in travelers' diarrhea samples.

Am J Trop Med Hyg 2014 Jan 4;90(1):124-32. Epub 2013 Nov 4.

Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas; Alkek Center for Metagenomics and Microbiome Research, Houston, Texas; Center for Infectious Diseases, School of Public Health, University of Texas Health Science Center, Houston, Texas; Department of Medicine, Baylor College of Medicine, Division of Infectious Diseases, University of Texas Medical School, St. Luke's Episcopal Hospital, Houston, Texas.

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http://dx.doi.org/10.4269/ajtmh.13-0383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3886408PMC
January 2014

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Appl Environ Microbiol 2013 Sep 21;79(17):5112-20. Epub 2013 Jun 21.

Department of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA.

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http://dx.doi.org/10.1128/AEM.01043-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753973PMC
September 2013

Adenosine-5'-triphosphate release by Mannheimia haemolytica, lipopolysaccharide, and interleukin-1 stimulated bovine pulmonary epithelial cells.

Vet Immunol Immunopathol 2012 Sep 15;149(1-2):58-65. Epub 2012 Jun 15.

University of Northern Iowa, Department of Biology, Cedar Falls, IA 50614, USA.

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http://dx.doi.org/10.1016/j.vetimm.2012.06.011DOI Listing
September 2012

High throughput sequencing methods for microbiome profiling: application to food animal systems.

Anim Health Res Rev 2012 Jun;13(1):40-53

Department of Molecular Virology and Microbiology, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030 USA.

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http://dx.doi.org/10.1017/S1466252312000126DOI Listing
June 2012

A snap-shot of Mannheimia hemolytica A1 gene expression during infection in the bovine host.

FEMS Microbiol Lett 2011 Dec;325(2):148-54

Department of Molecular & Cellular Biology, University of Guelph, Guelph, ON, Canada.

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http://dx.doi.org/10.1111/j.1574-6968.2011.02422.xDOI Listing
December 2011

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Authors:
Pelin Yilmaz Renzo Kottmann Dawn Field Rob Knight James R Cole Linda Amaral-Zettler Jack A Gilbert Ilene Karsch-Mizrachi Anjanette Johnston Guy Cochrane Robert Vaughan Christopher Hunter Joonhong Park Norman Morrison Philippe Rocca-Serra Peter Sterk Manimozhiyan Arumugam Mark Bailey Laura Baumgartner Bruce W Birren Martin J Blaser Vivien Bonazzi Tim Booth Peer Bork Frederic D Bushman Pier Luigi Buttigieg Patrick S G Chain Emily Charlson Elizabeth K Costello Heather Huot-Creasy Peter Dawyndt Todd DeSantis Noah Fierer Jed A Fuhrman Rachel E Gallery Dirk Gevers Richard A Gibbs Inigo San Gil Antonio Gonzalez Jeffrey I Gordon Robert Guralnick Wolfgang Hankeln Sarah Highlander Philip Hugenholtz Janet Jansson Andrew L Kau Scott T Kelley Jerry Kennedy Dan Knights Omry Koren Justin Kuczynski Nikos Kyrpides Robert Larsen Christian L Lauber Teresa Legg Ruth E Ley Catherine A Lozupone Wolfgang Ludwig Donna Lyons Eamonn Maguire Barbara A Methé Folker Meyer Brian Muegge Sara Nakielny Karen E Nelson Diana Nemergut Josh D Neufeld Lindsay K Newbold Anna E Oliver Norman R Pace Giriprakash Palanisamy Jörg Peplies Joseph Petrosino Lita Proctor Elmar Pruesse Christian Quast Jeroen Raes Sujeevan Ratnasingham Jacques Ravel David A Relman Susanna Assunta-Sansone Patrick D Schloss Lynn Schriml Rohini Sinha Michelle I Smith Erica Sodergren Aymé Spo Jesse Stombaugh James M Tiedje Doyle V Ward George M Weinstock Doug Wendel Owen White Andrew Whiteley Andreas Wilke Jennifer R Wortman Tanya Yatsunenko Frank Oliver Glöckner

Nat Biotechnol 2011 May;29(5):415-20

Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.

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https://darchive.mblwhoilibrary.org/bitstream/handle/1912/46
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http://www.nature.com/doifinder/10.1038/nbt.1823
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http://dx.doi.org/10.1038/nbt.1823DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367316PMC
May 2011

A catalog of reference genomes from the human microbiome.

Science 2010 May;328(5981):994-9

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http://dx.doi.org/10.1126/science.1183605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940224PMC
May 2010

Metagenomic pyrosequencing and microbial identification.

Clin Chem 2009 May 5;55(5):856-66. Epub 2009 Mar 5.

Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA.

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http://www.clinchem.org/cgi/doi/10.1373/clinchem.2008.107565
Publisher Site
http://dx.doi.org/10.1373/clinchem.2008.107565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2892905PMC
May 2009

Identification and characterization of transcriptional regulation of the Mannheimia haemolytica ferric uptake regulator.

Vet Microbiol 2007 Oct 29;124(3-4):298-309. Epub 2007 Apr 29.

Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.vetmic.2007.04.035DOI Listing
October 2007

Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium.

PLoS One 2007 Aug 1;2(7):e659. Epub 2007 Aug 1.

Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United States of America; Department of Microbiology and Molecular Genetics, University of Texas Medical School, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000659PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1924603PMC
August 2007

Complete nucleotide sequence of a P2 family lysogenic bacteriophage, varphiMhaA1-PHL101, from Mannheimia haemolytica serotype A1.

Virology 2006 Jun 2;350(1):79-89. Epub 2006 May 2.

Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.virol.2006.03.024DOI Listing
June 2006