Sarah A Pendergrass

Sarah A Pendergrass

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Sarah A Pendergrass

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A catalog of genetic loci associated with kidney function from analyses of a million individuals.

Authors:
Matthias Wuttke Yong Li Man Li Karsten B Sieber Mary F Feitosa Mathias Gorski Adrienne Tin Lihua Wang Audrey Y Chu Anselm Hoppmann Holger Kirsten Ayush Giri Jin-Fang Chai Gardar Sveinbjornsson Bamidele O Tayo Teresa Nutile Christian Fuchsberger Jonathan Marten Massimiliano Cocca Sahar Ghasemi Yizhe Xu Katrin Horn Damia Noce Peter J van der Most Sanaz Sedaghat Zhi Yu Masato Akiyama Saima Afaq Tarunveer S Ahluwalia Peter Almgren Najaf Amin Johan Ärnlöv Stephan J L Bakker Nisha Bansal Daniela Baptista Sven Bergmann Mary L Biggs Ginevra Biino Michael Boehnke Eric Boerwinkle Mathilde Boissel Erwin P Bottinger Thibaud S Boutin Hermann Brenner Marco Brumat Ralph Burkhardt Adam S Butterworth Eric Campana Archie Campbell Harry Campbell Mickaël Canouil Robert J Carroll Eulalia Catamo John C Chambers Miao-Ling Chee Miao-Li Chee Xu Chen Ching-Yu Cheng Yurong Cheng Kaare Christensen Renata Cifkova Marina Ciullo Maria Pina Concas James P Cook Josef Coresh Tanguy Corre Cinzia Felicita Sala Daniele Cusi John Danesh E Warwick Daw Martin H de Borst Alessandro De Grandi Renée de Mutsert Aiko P J de Vries Frauke Degenhardt Graciela Delgado Ayse Demirkan Emanuele Di Angelantonio Katalin Dittrich Jasmin Divers Rajkumar Dorajoo Kai-Uwe Eckardt Georg Ehret Paul Elliott Karlhans Endlich Michele K Evans Janine F Felix Valencia Hui Xian Foo Oscar H Franco Andre Franke Barry I Freedman Sandra Freitag-Wolf Yechiel Friedlander Philippe Froguel Ron T Gansevoort He Gao Paolo Gasparini J Michael Gaziano Vilmantas Giedraitis Christian Gieger Giorgia Girotto Franco Giulianini Martin Gögele Scott D Gordon Daniel F Gudbjartsson Vilmundur Gudnason Toomas Haller Pavel Hamet Tamara B Harris Catharina A Hartman Caroline Hayward Jacklyn N Hellwege Chew-Kiat Heng Andrew A Hicks Edith Hofer Wei Huang Nina Hutri-Kähönen Shih-Jen Hwang M Arfan Ikram Olafur S Indridason Erik Ingelsson Marcus Ising Vincent W V Jaddoe Johanna Jakobsdottir Jost B Jonas Peter K Joshi Navya Shilpa Josyula Bettina Jung Mika Kähönen Yoichiro Kamatani Candace M Kammerer Masahiro Kanai Mika Kastarinen Shona M Kerr Chiea-Chuen Khor Wieland Kiess Marcus E Kleber Wolfgang Koenig Jaspal S Kooner Antje Körner Peter Kovacs Aldi T Kraja Alena Krajcoviechova Holly Kramer Bernhard K Krämer Florian Kronenberg Michiaki Kubo Brigitte Kühnel Mikko Kuokkanen Johanna Kuusisto Martina La Bianca Markku Laakso Leslie A Lange Carl D Langefeld Jeannette Jen-Mai Lee Benjamin Lehne Terho Lehtimäki Wolfgang Lieb Su-Chi Lim Lars Lind Cecilia M Lindgren Jun Liu Jianjun Liu Markus Loeffler Ruth J F Loos Susanne Lucae Mary Ann Lukas Leo-Pekka Lyytikäinen Reedik Mägi Patrik K E Magnusson Anubha Mahajan Nicholas G Martin Jade Martins Winfried März Deborah Mascalzoni Koichi Matsuda Christa Meisinger Thomas Meitinger Olle Melander Andres Metspalu Evgenia K Mikaelsdottir Yuri Milaneschi Kozeta Miliku Pashupati P Mishra Karen L Mohlke Nina Mononen Grant W Montgomery Dennis O Mook-Kanamori Josyf C Mychaleckyj Girish N Nadkarni Mike A Nalls Matthias Nauck Kjell Nikus Boting Ning Ilja M Nolte Raymond Noordam Jeffrey O'Connell Michelle L O'Donoghue Isleifur Olafsson Albertine J Oldehinkel Marju Orho-Melander Willem H Ouwehand Sandosh Padmanabhan Nicholette D Palmer Runolfur Palsson Brenda W J H Penninx Thomas Perls Markus Perola Mario Pirastu Nicola Pirastu Giorgio Pistis Anna I Podgornaia Ozren Polasek Belen Ponte David J Porteous Tanja Poulain Peter P Pramstaller Michael H Preuss Bram P Prins Michael A Province Ton J Rabelink Laura M Raffield Olli T Raitakari Dermot F Reilly Rainer Rettig Myriam Rheinberger Kenneth M Rice Paul M Ridker Fernando Rivadeneira Federica Rizzi David J Roberts Antonietta Robino Peter Rossing Igor Rudan Rico Rueedi Daniela Ruggiero Kathleen A Ryan Yasaman Saba Charumathi Sabanayagam Veikko Salomaa Erika Salvi Kai-Uwe Saum Helena Schmidt Reinhold Schmidt Ben Schöttker Christina-Alexandra Schulz Nicole Schupf Christian M Shaffer Yuan Shi Albert V Smith Blair H Smith Nicole Soranzo Cassandra N Spracklen Konstantin Strauch Heather M Stringham Michael Stumvoll Per O Svensson Silke Szymczak E-Shyong Tai Salman M Tajuddin Nicholas Y Q Tan Kent D Taylor Andrej Teren Yih-Chung Tham Joachim Thiery Chris H L Thio Hauke Thomsen Gudmar Thorleifsson Daniela Toniolo Anke Tönjes Johanne Tremblay Ioanna Tzoulaki André G Uitterlinden Simona Vaccargiu Rob M van Dam Pim van der Harst Cornelia M van Duijn Digna R Velez Edward Niek Verweij Suzanne Vogelezang Uwe Völker Peter Vollenweider Gerard Waeber Melanie Waldenberger Lars Wallentin Ya Xing Wang Chaolong Wang Dawn M Waterworth Wen Bin Wei Harvey White John B Whitfield Sarah H Wild James F Wilson Mary K Wojczynski Charlene Wong Tien-Yin Wong Liang Xu Qiong Yang Masayuki Yasuda Laura M Yerges-Armstrong Weihua Zhang Alan B Zonderman Jerome I Rotter Murielle Bochud Bruce M Psaty Veronique Vitart James G Wilson Abbas Dehghan Afshin Parsa Daniel I Chasman Kevin Ho Andrew P Morris Olivier Devuyst Shreeram Akilesh Sarah A Pendergrass Xueling Sim Carsten A Böger Yukinori Okada Todd L Edwards Harold Snieder Kari Stefansson Adriana M Hung Iris M Heid Markus Scholz Alexander Teumer Anna Köttgen Cristian Pattaro

Nat Genet 2019 06 31;51(6):957-972. Epub 2019 May 31.

Eurac Research, Institute for Biomedicine (affiliated with the University of Lübeck), Bolzano, Italy.

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http://dx.doi.org/10.1038/s41588-019-0407-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6698888PMC
June 2019

The importance of buprenorphine research in the opioid crisis.

Mol Psychiatry 2019 May 7;24(5):626-632. Epub 2019 Jan 7.

Center for Neurobiology and Behavior, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

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http://www.nature.com/articles/s41380-018-0329-5
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http://dx.doi.org/10.1038/s41380-018-0329-5DOI Listing
May 2019

Using Electronic Health Records To Generate Phenotypes For Research.

Curr Protoc Hum Genet 2019 01 5;100(1):e80. Epub 2018 Dec 5.

Cleveland Institute for Computational Biology, Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio.

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http://doi.wiley.com/10.1002/cphg.80
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http://dx.doi.org/10.1002/cphg.80DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6318047PMC
January 2019

Human-Disease Phenotype Map Derived from PheWAS across 38,682 Individuals.

Am J Hum Genet 2019 Jan 29;104(1):55-64. Epub 2018 Dec 29.

The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA; Biomedical and Translational Informatics Institute, Geisinger, Danville, PA 17821, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2018.11.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323551PMC
January 2019

Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico.

BMC Bioinformatics 2019 Jan 22;20(1):46. Epub 2019 Jan 22.

Genomics and Computational Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1186/s12859-018-2591-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343276PMC
January 2019

Using Adipose Measures from Health Care Provider-Based Imaging Data for Discovery.

J Obes 2018 27;2018:3253096. Epub 2018 Sep 27.

Biomedical and Translational Informatics Institute, Geisinger Research, Danville, PA, USA.

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https://www.hindawi.com/journals/jobe/2018/3253096/
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http://dx.doi.org/10.1155/2018/3253096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180992PMC
September 2018

A simulation study investigating power estimates in phenome-wide association studies.

BMC Bioinformatics 2018 04 4;19(1):120. Epub 2018 Apr 4.

Department of Genetics and Institute for Biomedical Informatics, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA, USA.

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http://dx.doi.org/10.1186/s12859-018-2135-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885318PMC
April 2018

Characterizing and Managing Missing Structured Data in Electronic Health Records: Data Analysis.

JMIR Med Inform 2018 Feb 23;6(1):e11. Epub 2018 Feb 23.

Biomedical and Translational Informatics Institute, Geisinger, Danville, PA, United States.

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http://dx.doi.org/10.2196/medinform.8960DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5845101PMC
February 2018

PATTERNS IN BIOMEDICAL DATA-HOW DO WE FIND THEM?

Pac Symp Biocomput 2017 ;22:177-183

The Pennsylvania State University, Department of Biochemistry and Molecular Biology, 328 Innovation Blvd Ste 210, State College, PA 16803, USA,

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http://dx.doi.org/10.1142/9789813207813_0018DOI Listing
July 2017

OPENING THE DOOR TO THE LARGE SCALE USE OF CLINICAL LAB MEASURES FOR ASSOCIATION TESTING: EXPLORING DIFFERENT METHODS FOR DEFINING PHENOTYPES.

Pac Symp Biocomput 2017 ;22:356-367

Biomedical & Translational Informatics, Geisinger Health System, 100 N. Academy Ave. Danville, PA 17821, USA,

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http://dx.doi.org/10.1142/9789813207813_0034DOI Listing
June 2017

Multiphenotype association study of patients randomized to initiate antiretroviral regimens in AIDS Clinical Trials Group protocol A5202.

Pharmacogenet Genomics 2017 03;27(3):101-111

aThe Center for Systems Genomics, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park bBiomedical and Translational Informatics, Geisinger Health System, Danville, Pennsylvania cLos Angeles Biomedical Research Institute at Harbor, UCLA Medical Center, Torrance, California dUniversity of Rochester Medical Center, Rochester eDepartment of Pharmacy Practice, Center for Integrated Global Biomedical Sciences, University at Buffalo, SUNY, Buffalo, New York fVanderbilt University School of Medicine gMeharry Medical College, Nashville, Tennessee, USA.

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http://dx.doi.org/10.1097/FPC.0000000000000263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5285297PMC
March 2017

PHENOME-WIDE INTERACTION STUDY (PheWIS) IN AIDS CLINICAL TRIALS GROUP DATA (ACTG).

Pac Symp Biocomput 2016 ;21:57-68

Center for System Genomics, The Pennsylvania State University, University Park, PA 16802, USA;

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722952PMC
October 2016

INTEGRATING CLINICAL LABORATORY MEASURES AND ICD-9 CODE DIAGNOSES IN PHENOME-WIDE ASSOCIATION STUDIES.

Pac Symp Biocomput 2016 ;21:168-79

Biomedical and Translational Informatics, Geisinger Health System, Danville, PA, USA3Center for Systems Genomics, The Pennsylvania State University, University Park, PA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4718547PMC
October 2016

Pathway analysis by randomization incorporating structure-PARIS: an update.

Bioinformatics 2016 08 7;32(15):2361-3. Epub 2016 Mar 7.

Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH, USA Institute for Computational Biology, Case Western Reserve University, Cleveland, OH, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965631PMC
August 2016

eMERGE Phenome-Wide Association Study (PheWAS) identifies clinical associations and pleiotropy for stop-gain variants.

BMC Med Genomics 2016 08 12;9 Suppl 1:32. Epub 2016 Aug 12.

Division of Molecular Biology and Human Genetics, Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, 7505, South Africa.

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http://dx.doi.org/10.1186/s12920-016-0191-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989894PMC
August 2016

Evidence for extensive pleiotropy among pharmacogenes.

Pharmacogenomics 2016 06 1;17(8):853-66. Epub 2016 Jun 1.

Department of Epidemiology & Biostatistics, Institute for Computational Biology, Case Western Reserve University, Cleveland, OH 44106, USA.

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http://dx.doi.org/10.2217/pgs-2015-0007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5352965PMC
June 2016

Phenome-Wide Association Studies: Embracing Complexity for Discovery.

Hum Hered 2015 28;79(3-4):111-23. Epub 2015 Jul 28.

Biomedical and Translational Informatics Program, Geisinger Health System, Danville, Pa., USA.

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http://dx.doi.org/10.1159/000381851DOI Listing
April 2016

Leveraging Epidemiologic and Clinical Collections for Genomic Studies of Complex Traits.

Hum Hered 2015 28;79(3-4):137-46. Epub 2015 Jul 28.

Department of Epidemiology and Biostatistics, Institute for Computational Biology, Case Western Reserve University, Cleveland, Ohio, USA.

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http://dx.doi.org/10.1159/000381805DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4528966PMC
April 2016

The detection and characterization of pleiotropy: discovery, progress, and promise.

Brief Bioinform 2016 Jan 28;17(1):13-22. Epub 2015 Jul 28.

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http://dx.doi.org/10.1093/bib/bbv050DOI Listing
January 2016

Towards a phenome-wide catalog of human clinical traits impacted by genetic ancestry.

BioData Min 2015 11;8:35. Epub 2015 Nov 11.

Institute for Computational Biology, Department of Epidemiology and Biostatistics, Case Western Reserve University, Wolstein Research Building, 2103 Cornell Road, Suite 2527, Cleveland, OH 44106 USA.

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http://dx.doi.org/10.1186/s13040-015-0068-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642611PMC
November 2015

Methods of integrating data to uncover genotype-phenotype interactions.

Nat Rev Genet 2015 Feb 13;16(2):85-97. Epub 2015 Jan 13.

Department of Biochemistry and Molecular Biology, Center for Systems Genomics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://www.nature.com/articles/nrg3868
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http://dx.doi.org/10.1038/nrg3868DOI Listing
February 2015

Regulatory polymorphisms in human DBH affect peripheral gene expression and sympathetic activity.

Circ Res 2014 Dec 17;115(12):1017-25. Epub 2014 Oct 17.

From the Center for Pharmacogenomics, College of Medicine, The Ohio State University, Columbus (E.S.B., J.K.P., W.S.); Department of Human Genetics, Emory University School of Medicine, Atlanta, GA (D.W., J.F.C.); Center for Systems Genomics, Pennsylvania State University, University Park (A.V., S.A.P., M.D.R.); Department of Genetics, University of North Carolina School of Medicine, Chapel Hill (L.A.L.); Department of Physiology and Biophysics, University of Mississippi Medical Center, Jackson (J.G.W.); The Sigfried and Janet Weis Center for Research, Geisinger Health System, Danville, PA (H.K., G.T., D.J.C.); Institute for Personalized Medicine, The Pennsylvania State University College of Medicine, Hershey (G.S.G.); Center for Human Genetics, Marshfield Clinic Research Foundation, WI (M.H.B., S.J.H.); and Department of Psychology, The University of Chicago, IL (G.J.N.).

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http://dx.doi.org/10.1161/CIRCRESAHA.116.304398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4258174PMC
December 2014

Genomic architecture of pharmacological efficacy and adverse events.

Pharmacogenomics 2014 Dec;15(16):2025-48

Department of Bioengineering & Therapeutic Sciences, Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.2217/pgs.14.144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308414PMC
December 2014

Knowledge-driven genomic interactions: an application in ovarian cancer.

BioData Min 2014 9;7:20. Epub 2014 Sep 9.

Department of Biochemistry and Molecular Biology, Center for Systems Genomics, Pennsylvania State University, University Park, Pennsylvania, USA.

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http://dx.doi.org/10.1186/1756-0381-7-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161273PMC
September 2014

Environment-wide association study (EWAS) for type 2 diabetes in the Marshfield Personalized Medicine Research Project Biobank.

Pac Symp Biocomput 2014 :200-11

Center for Systems Genomics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, 512 Wartik Lab, University Park, PA 16802, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4037237PMC
August 2014

Low frequency variants, collapsed based on biological knowledge, uncover complexity of population stratification in 1000 genomes project data.

PLoS Genet 2013 26;9(12):e1003959. Epub 2013 Dec 26.

Center for Systems Genomics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, Eberly College of Science, The Huck Institutes of the Life Sciences, University Park, Pennsylvania, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003959DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873241PMC
August 2014

Pleiotropic genes for metabolic syndrome and inflammation.

Mol Genet Metab 2014 Aug 9;112(4):317-38. Epub 2014 May 9.

Division of Statistical Genomics, Department of Genetics and Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ymgme.2014.04.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4122618PMC
August 2014

Characterization of mitochondrial haplogroups in a large population-based sample from the United States.

Hum Genet 2014 Jul 1;133(7):861-8. Epub 2014 Feb 1.

Department of Molecular Physiology and Biophysics, Center for Human Genetics Research, Vanderbilt University, 2215 Garland Avenue, 519 Light Hall, Nashville, Tennessee, USA,

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http://dx.doi.org/10.1007/s00439-014-1421-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4113317PMC
July 2014

ATHENA: the analysis tool for heritable and environmental network associations.

Bioinformatics 2014 Mar 21;30(5):698-705. Epub 2013 Oct 21.

Inherited Disease Research Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA and Department of Biochemistry and Molecular Biology, Center for Systems Genomics, Pennsylvania State University, University Park, PA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt572DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933870PMC
March 2014

Detecting and Characterizing Pleiotropy: New Methods for Uncovering the Connection Between the Complexity of Genomic Architecture and Multiple phenotypes.

Pac Symp Biocomput 2014 Jan:183-187

Department of Biochemistry and Molecular Biology, Pennsylvania State University, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1142/9789814583220_0018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108263PMC
January 2014

Using BioBin to explore rare variant population stratification.

Pac Symp Biocomput 2013 :332-43

Center for Human Genetics Research, Vanderbilt University, 519 Light Hall, Nashville, TN 37232, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638724PMC
December 2013

Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development.

BioData Min 2013 Dec 30;6(1):25. Epub 2013 Dec 30.

Center for Systems Genomics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, Eberly College of Science, The Huck Institutes of the Life Sciences, University Park, Pennsylvania, PA, USA.

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http://dx.doi.org/10.1186/1756-0381-6-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3917600PMC
December 2013

BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge.

BMC Med Genomics 2013 7;6 Suppl 2:S6. Epub 2013 May 7.

Center for Human Genetics Research, Vanderbilt University, Nashville, TN 37232, USA.

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http://dx.doi.org/10.1186/1755-8794-6-S2-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3654874PMC
October 2013

Visualizing genomic information across chromosomes with PhenoGram.

BioData Min 2013 Oct 16;6(1):18. Epub 2013 Oct 16.

Center for Systems Genomics, Department of Biochemistry and Molecular Biology, Eberly College of Science, The Huck Institutes of the Life Sciences, The Pennsylvania State University, 512 Wartik Laboratory, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/1756-0381-6-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015356PMC
October 2013

Polygenic heritability estimates in pharmacogenetics: focus on asthma and related phenotypes.

Pharmacogenet Genomics 2013 Jun;23(6):324-8

Department of Medicine, Channing Division of Network Medicine, Brigham and Women’s Hospital, 181 Longwood Ave, Boston, MA 02115, USA.

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http://dx.doi.org/10.1097/FPC.0b013e3283607acfDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767309PMC
June 2013

Visually integrating and exploring high throughput Phenome-Wide Association Study (PheWAS) results using PheWAS-View.

BioData Min 2012 Jun 8;5(1). Epub 2012 Jun 8.

Center for Systems Genomics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, Eberly College of Science, The Huck Institutes of the Life Sciences, University Park, PA, USA.

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http://biodatamining.biomedcentral.com/articles/10.1186/1756
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http://dx.doi.org/10.1186/1756-0381-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3476448PMC
June 2012

Intrinsic gene expression subsets of diffuse cutaneous systemic sclerosis are stable in serial skin biopsies.

J Invest Dermatol 2012 May 9;132(5):1363-73. Epub 2012 Feb 9.

Department of Genetics, Dartmouth Medical School, Hanover, New Hampshire 03755, USA.

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http://dx.doi.org/10.1038/jid.2011.472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326181PMC
May 2012

Synthesis-View: visualization and interpretation of SNP association results for multi-cohort, multi-phenotype data and meta-analysis.

BioData Min 2010 Dec 16;3:10. Epub 2010 Dec 16.

Center for Human Genetics Research, Vanderbilt University Medical Center, Nashville TN, USA.

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http://dx.doi.org/10.1186/1756-0381-3-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012023PMC
December 2010

Antagonistic effect of the matricellular signaling protein CCN3 on TGF-beta- and Wnt-mediated fibrillinogenesis in systemic sclerosis and Marfan syndrome.

J Invest Dermatol 2010 Jun 25;130(6):1514-23. Epub 2010 Feb 25.

Rheumatology Section, The Arthritis Center, Boston University School of Medicine, 72 E Newton Street, Boston, MA 02218, USA.

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http://dx.doi.org/10.1038/jid.2010.15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3071475PMC
June 2010

Molecular subsets in the gene expression signatures of scleroderma skin.

PLoS One 2008 Jul 16;3(7):e2696. Epub 2008 Jul 16.

Department of Genetics, Dartmouth Medical School, Hanover, New Hampshire, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0002696PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2481301PMC
July 2008

Understanding systemic sclerosis through gene expression profiling.

Curr Opin Rheumatol 2007 Nov;19(6):561-7

Department of Genetics, Norris Cotton Cancer Center, Dartmouth Medical School, Hanover, New Hampshire, USA.

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http://dx.doi.org/10.1097/BOR.0b013e3282f00375DOI Listing
November 2007

Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein.

RNA 2006 Oct 24;12(10):1853-67. Epub 2006 Aug 24.

Department of Genetics, Dartmouth Medical School, Hanover, New Hampshire 03755, USA.

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http://dx.doi.org/10.1261/rna.76006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1581977PMC
October 2006

Comparative evaluation of strain-based and model-based modulus elastography.

Ultrasound Med Biol 2005 Jun;31(6):787-802

Department of Radiology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, USA.

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http://dx.doi.org/10.1016/j.ultrasmedbio.2005.02.005DOI Listing
June 2005