Sara P Garcia

Sara P Garcia

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Sara P Garcia

Sara P Garcia

Publications by authors named "Sara P Garcia"

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30Publications

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hPCL3S promotes proliferation and migration of androgen-independent prostate cancer cells.

Oncotarget 2020 Mar 24;11(12):1051-1074. Epub 2020 Mar 24.

University de Lille, CNRS, Institut Pasteur de Lille, UMR 8161m M3T, Mechanisms of Tumorigenesis and Targeted Therapies, F-59000 Lille, France.

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http://dx.doi.org/10.18632/oncotarget.27511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7105160PMC
March 2020

Two faces of bivalent domain regulate VEGFA responsiveness and angiogenesis.

Cell Death Dis 2020 Jan 30;11(1):75. Epub 2020 Jan 30.

Department of Pediatric Cardiology, Xin Hua Hospital, School of Medicine, Key Laboratory of Systems Biomedicine, Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, 200240, China.

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http://dx.doi.org/10.1038/s41419-020-2228-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6992747PMC
January 2020

Assessment of computational methods for the analysis of single-cell ATAC-seq data.

Genome Biol 2019 11 18;20(1):241. Epub 2019 Nov 18.

Molecular Pathology Unit, Massachusetts General Hospital Research Institute, Charlestown, MA, 02129, USA.

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http://dx.doi.org/10.1186/s13059-019-1854-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859644PMC
November 2019

CRISPR DNA base editors with reduced RNA off-target and self-editing activities.

Nat Biotechnol 2019 09 2;37(9):1041-1048. Epub 2019 Sep 2.

Molecular Pathology Unit, Massachusetts General Hospital, Charlestown, MA, USA.

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http://dx.doi.org/10.1038/s41587-019-0236-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6730565PMC
September 2019

Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors.

Nature 2019 05 17;569(7756):433-437. Epub 2019 Apr 17.

Molecular Pathology Unit, Massachusetts General Hospital, Charlestown, MA, USA.

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http://dx.doi.org/10.1038/s41586-019-1161-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6657343PMC
May 2019

Molecularly distinct models of zebrafish Myc-induced B cell leukemia.

Leukemia 2019 02 20;33(2):559-562. Epub 2018 Dec 20.

Section of Pediatric Hematology-Oncology, Department of Pediatrics, University of Oklahoma Health Sciences Center, Oklahoma City, OK, 73104, USA.

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http://dx.doi.org/10.1038/s41375-018-0328-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6365381PMC
February 2019

Cell of origin dictates aggression and stem cell number in acute lymphoblastic leukemia.

Leukemia 2018 08 18;32(8):1860-1865. Epub 2018 Apr 18.

Department of Pathology, Massachusetts General Hospital Research Institute, Boston, MA, 02114, USA.

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http://dx.doi.org/10.1038/s41375-018-0130-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6620784PMC
August 2018

Vangl2/RhoA Signaling Pathway Regulates Stem Cell Self-Renewal Programs and Growth in Rhabdomyosarcoma.

Cell Stem Cell 2018 03;22(3):414-427.e6

Molecular Pathology, Cancer Center, and Regenerative Medicine, Massachusetts General Hospital Research Institute, Boston, MA 02129, USA; Harvard Stem Cell Institute, Cambridge, MA 02139, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2018.02.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354590PMC
March 2018

Robust lineage reconstruction from high-dimensional single-cell data.

Nucleic Acids Res 2016 08 20;44(14):e122. Epub 2016 May 20.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA Harvard Stem Cell Institute, Cambridge, MA 02138, USA

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http://dx.doi.org/10.1093/nar/gkw452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001598PMC
August 2016

BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis.

Nature 2015 Nov 16;527(7577):192-7. Epub 2015 Sep 16.

Division of Hematology/Oncology, Boston Children's Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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https://pdfs.semanticscholar.org/1ddb/3d38167d122b418b8d6968
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http://www.nature.com/doifinder/10.1038/nature15521
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http://dx.doi.org/10.1038/nature15521DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644101PMC
November 2015

DNA sequences at a glance.

PLoS One 2013 21;8(11):e79922. Epub 2013 Nov 21.

Signal Processing Lab, IEETA/DETI, University of Aveiro, Aveiro, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0079922PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836782PMC
September 2014

Compressing resequencing data with GReEn.

Methods Mol Biol 2013 ;1038:27-37

IEETA/DETI, University of Aveiro, Aveiro, Portugal.

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http://dx.doi.org/10.1007/978-1-62703-514-9_2DOI Listing
February 2014

Inter-STOP symbol distances for the identification of coding regions.

J Integr Bioinform 2013 Nov 14;10(3):230. Epub 2013 Nov 14.

Signal Processing Lab, IEETA and Department of Electronics, Telecommunications and Informatics, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.2390/biecoll-jib-2013-230DOI Listing
November 2013

The breakdown of the word symmetry in the human genome.

J Theor Biol 2013 Oct 2;335:153-9. Epub 2013 Jul 2.

CIDMA - Center for Research and Development in Mathematics and Applications, Department of Mathematics, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://sweet.ua.pt/pjf/PDF/Ferreira2013f.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S002251931300304
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http://dx.doi.org/10.1016/j.jtbi.2013.06.032DOI Listing
October 2013

Minimal absent words in four human genome assemblies.

PLoS One 2011 29;6(12):e29344. Epub 2011 Dec 29.

Signal Processing Laboratory, Institute of Electronics and Telematics Engineering of Aveiro, University of Aveiro, Aveiro, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029344PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248429PMC
April 2012

GReEn: a tool for efficient compression of genome resequencing data.

Nucleic Acids Res 2012 Feb 1;40(4):e27. Epub 2011 Dec 1.

Signal Processing Lab, IEETA/DETI, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1093/nar/gkr1124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287168PMC
February 2012

Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions.

J Integr Bioinform 2011 Sep 15;8(3):172. Epub 2011 Sep 15.

Signal Processing Lab, IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.2390/biecoll-jib-2011-172DOI Listing
September 2011

Genome analysis with distance to the nearest dissimilar nucleotide.

J Theor Biol 2011 Apr 2;275(1):52-8. Epub 2011 Feb 2.

Department of Mathematics, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1016/j.jtbi.2011.01.038DOI Listing
April 2011

Minimal absent words in prokaryotic and eukaryotic genomes.

PLoS One 2011 Jan 31;6(1):e16065. Epub 2011 Jan 31.

Signal Processing Laboratory, IEETA, University of Aveiro, Aveiro, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016065PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031530PMC
January 2011

On finding minimal absent words.

BMC Bioinformatics 2009 May 8;10:137. Epub 2009 May 8.

Signal Processing Lab, DETI/IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1186/1471-2105-10-137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2698904PMC
May 2009

Multivariate phase space reconstruction by nearest neighbor embedding with different time delays.

Phys Rev E Stat Nonlin Soft Matter Phys 2005 Aug 31;72(2 Pt 2):027205. Epub 2005 Aug 31.

Biomathematics Group, Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Rua da Quinta Grande 6, 2780-156 Oeiras, Portugal.

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http://dx.doi.org/10.1103/PhysRevE.72.027205DOI Listing
August 2005

Nearest neighbor embedding with different time delays.

Phys Rev E Stat Nonlin Soft Matter Phys 2005 Mar 29;71(3 Pt 2B):037204. Epub 2005 Mar 29.

Biomathematics Group, Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Oeiras, Portugal.

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http://dx.doi.org/10.1103/PhysRevE.71.037204DOI Listing
March 2005