Sankar Subramanian

Sankar Subramanian

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Sankar Subramanian

Publications by authors named "Sankar Subramanian"

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51Publications

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Greenlip Abalone () Genome and Protein Analysis Provides Insights into Maturation and Spawning.

G3 (Bethesda) 2019 Oct 7;9(10):3067-3078. Epub 2019 Oct 7.

School of Science and Education, Genecology Research Center, University of the Sunshine Coast, Maroochydore DC, Queensland, Australia, 4558.

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http://dx.doi.org/10.1534/g3.119.400388DOI Listing
October 2019

Melioidosis-Series of Seven Cases from Madurai, Tamil Nadu, India.

Indian J Crit Care Med 2019 Mar;23(3):149-151

Department of General Medicine, Velammal Medical College Hospital and Research institute, Madurai, Tamil Nadu, India.

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http://dx.doi.org/10.5005/jp-journals-10071-23139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6487615PMC
March 2019

Effect of genetic drift on determinants of protein evolution.

Biol Lett 2018 07;14(7)

GeneCology Research Centre, The University of the Sunshine Coast, 90 Sippy Downs Drive, Sippy Downs, Queensland 4556, Australia

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http://rsbl.royalsocietypublishing.org/lookup/doi/10.1098/rs
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http://dx.doi.org/10.1098/rsbl.2018.0167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6083237PMC
July 2018

Abundance of clinical variants in exons included in multiple transcripts.

Hum Genomics 2018 06 28;12(1):33. Epub 2018 Jun 28.

GeneCology Research Centre, The University of the Sunshine Coast, 90 Sippy Downs Drive, Sippy Downs, Qld, 4556, Australia.

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http://dx.doi.org/10.1186/s40246-018-0166-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025840PMC
June 2018

Influence of Effective Population Size on Genes under Varying Levels of Selection Pressure.

Genome Biol Evol 2018 03;10(3):756-762

GeneCology Research Centre, The University of the Sunshine Coast, Sippy Downs, Queensland, Australia.

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http://dx.doi.org/10.1093/gbe/evy047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5841380PMC
March 2018

A genomic history of Aboriginal Australia.

Nature 2016 Oct 21;538(7624):207-214. Epub 2016 Sep 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1038/nature18299DOI Listing
October 2016

Ancient mtDNA sequences from the First Australians revisited.

Proc Natl Acad Sci U S A 2016 06 6;113(25):6892-7. Epub 2016 Jun 6.

Environmental Futures Research Institute, Griffith University, Nathan, QLD 4111, Australia;

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http://dx.doi.org/10.1073/pnas.1521066113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4922152PMC
June 2016

The effects of sample size on population genomic analyses--implications for the tests of neutrality.

BMC Genomics 2016 Feb 20;17:123. Epub 2016 Feb 20.

Research Centre for Human Evolution, Environmental Futures Research Institute, Griffith University, 170 Kessels Road, Nathan, Qld, 4111, Australia.

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http://dx.doi.org/10.1186/s12864-016-2441-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4761153PMC
February 2016

Europeans have a higher proportion of high‑frequency deleterious variants than Africans.

Hum Genet 2016 Jan;135(1):1-7

Environmental Futures Research Institute, Griffith University, 170 Kessels Road, Nathan, QLD 4111, Australia.

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http://dx.doi.org/10.1007/s00439-015-1604-zDOI Listing
January 2016

Distance-dependent patterns of molecular divergences in Tuatara mitogenomes.

Sci Rep 2015 Mar 3;5:8703. Epub 2015 Mar 3.

Enviromental Futures Research Institute, Griffith University, Nathan 4111, Australia.

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http://www.nature.com/articles/srep08703
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http://dx.doi.org/10.1038/srep08703DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4346810PMC
March 2015

Complete mitochondrial genomes of Tuatara endemic to different islands of New Zealand.

Mitochondrial DNA 2015 Feb 24;26(1):25-6. Epub 2013 Oct 24.

Allan Wilson Centre for Molecular Ecology and Evolution, School of Biological Sciences, University of Auckland , Auckland , New Zealand and.

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http://dx.doi.org/10.3109/19401736.2013.840613DOI Listing
February 2015

Using the plurality of codon positions to identify deleterious variants in human exomes.

Bioinformatics 2015 Feb 4;31(3):301-5. Epub 2014 Oct 4.

Environmental Futures Research Institute, Griffith University, 170 Kessels Road, Nathan Qld 4111, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btu653DOI Listing
February 2015

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Authors:
Erich D Jarvis Siavash Mirarab Andre J Aberer Bo Li Peter Houde Cai Li Simon Y W Ho Brant C Faircloth Benoit Nabholz Jason T Howard Alexander Suh Claudia C Weber Rute R da Fonseca Jianwen Li Fang Zhang Hui Li Long Zhou Nitish Narula Liang Liu Ganesh Ganapathy Bastien Boussau Md Shamsuzzoha Bayzid Volodymyr Zavidovych Sankar Subramanian Toni Gabaldón Salvador Capella-Gutiérrez Jaime Huerta-Cepas Bhanu Rekepalli Kasper Munch Mikkel Schierup Bent Lindow Wesley C Warren David Ray Richard E Green Michael W Bruford Xiangjiang Zhan Andrew Dixon Shengbin Li Ning Li Yinhua Huang Elizabeth P Derryberry Mads Frost Bertelsen Frederick H Sheldon Robb T Brumfield Claudio V Mello Peter V Lovell Morgan Wirthlin Maria Paula Cruz Schneider Francisco Prosdocimi José Alfredo Samaniego Amhed Missael Vargas Velazquez Alonzo Alfaro-Núñez Paula F Campos Bent Petersen Thomas Sicheritz-Ponten An Pas Tom Bailey Paul Scofield Michael Bunce David M Lambert Qi Zhou Polina Perelman Amy C Driskell Beth Shapiro Zijun Xiong Yongli Zeng Shiping Liu Zhenyu Li Binghang Liu Kui Wu Jin Xiao Xiong Yinqi Qiuemei Zheng Yong Zhang Huanming Yang Jian Wang Linnea Smeds Frank E Rheindt Michael Braun Jon Fjeldsa Ludovic Orlando F Keith Barker Knud Andreas Jønsson Warren Johnson Klaus-Peter Koepfli Stephen O'Brien David Haussler Oliver A Ryder Carsten Rahbek Eske Willerslev Gary R Graves Travis C Glenn John McCormack Dave Burt Hans Ellegren Per Alström Scott V Edwards Alexandros Stamatakis David P Mindell Joel Cracraft Edward L Braun Tandy Warnow Wang Jun M Thomas P Gilbert Guojie Zhang

Science 2014 Dec;346(6215):1320-31

China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1253451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405904PMC
December 2014

Second generation DNA sequencing of the mitogenome of the Chinstrap penguin and comparative genomics of Antarctic penguins.

Mitochondrial DNA 2014 Aug 24;25(4):271-2. Epub 2013 Jun 24.

Environmental Futures Centre, Griffith University , Nathan Qld , Australia.

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http://dx.doi.org/10.3109/19401736.2013.800503DOI Listing
August 2014

Evidence for a recent origin of penguins.

Biol Lett 2013 13;9(6):20130748. Epub 2013 Nov 13.

Environmental Futures Centre, Griffith University, , Nathan, Australia.

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http://dx.doi.org/10.1098/rsbl.2013.0748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871361PMC
May 2014

Significance of population size on the fixation of nonsynonymous mutations in genes under varying levels of selection pressure.

Genetics 2013 Mar 10;193(3):995-1002. Epub 2013 Jan 10.

Environmental Futures Centre, Griffith University, Nathan, QLD 4111, Australia.

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http://dx.doi.org/10.1534/genetics.112.147900DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584012PMC
March 2013

Quantifying harmful mutations in human populations.

Eur J Hum Genet 2012 Dec 18;20(12):1320-2. Epub 2012 Apr 18.

Environmental Futures Centre and Australian Rivers Institute, School of Environment, Griffith University, Nathan, Qld, Australia.

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http://dx.doi.org/10.1038/ejhg.2012.68DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499755PMC
December 2012

Adélie penguins and temperature changes in Antarctica: a long-term view.

Integr Zool 2012 Jun;7(2):113-20

Allan Wilson Centre for Molecular Ecology and Evolution, University of Auckland, New Zealand.

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http://dx.doi.org/10.1111/j.1749-4877.2012.00288.xDOI Listing
June 2012

The abundance of deleterious polymorphisms in humans.

Genetics 2012 Apr 20;190(4):1579-83. Epub 2012 Jan 20.

Australian Rivers Institute, Griffith School of Environment, Griffith University, Nathan, Queensland 4111, Australia.

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http://dx.doi.org/10.1534/genetics.111.137893DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316666PMC
April 2012

Fixation of deleterious mutations at critical positions in human proteins.

Mol Biol Evol 2011 Sep 15;28(9):2687-93. Epub 2011 Apr 15.

Griffith School of Environment, Griffith University, Nathan, Queensland, Australia.

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http://dx.doi.org/10.1093/molbev/msr097DOI Listing
September 2011

High proportions of deleterious polymorphisms in constrained human genes.

Mol Biol Evol 2011 Jan 25;28(1):49-52. Epub 2010 Oct 25.

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http://dx.doi.org/10.1093/molbev/msq287DOI Listing
January 2011

Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi.

BMC Evol Biol 2010 Dec 15;10:387. Epub 2010 Dec 15.

Griffith School of Environment and the School of Biomolecular and Physical Sciences, Griffith University, 170 Kessels Road, Nathan, Qld 4111 Australia.

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http://dx.doi.org/10.1186/1471-2148-10-387DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3009673PMC
December 2010

High mitogenomic evolutionary rates and time dependency.

Trends Genet 2009 Nov 14;25(11):482-6. Epub 2009 Oct 14.

Griffith School of Environment, Griffith University, 170 Kessels Road, Nathan, Qld 4111, Australia.

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http://dx.doi.org/10.1016/j.tig.2009.09.005DOI Listing
November 2009

A rare association of serous cystadenoma of the pancreas with mediastinal lipoma: a case report.

Cases J 2009 Aug 11;2:7165. Epub 2009 Aug 11.

Department of Surgical Gastroenterology, Sri Ramachandra Medical College & Research Institute, Sri Ramachandra University Porur, Chennai, 600116, Tamil Nadu India.

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http://dx.doi.org/10.4076/1757-1626-2-7165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2769342PMC
August 2009

Retroperitoneal hemorrhagic shock in a patient on warfarin therapy.

J Emerg Trauma Shock 2009 May;2(2):137-8

Department of Surgical Gastroenterology, Sri Ramachandra Medical College & Research Institute, Sri Ramachandra University, Porur, Chennai, Tamilnadu, India.

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http://dx.doi.org/10.4103/0974-2700.50752DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700600PMC
May 2009

Temporal trails of natural selection in human mitogenomes.

Mol Biol Evol 2009 Apr 15;26(4):715-7. Epub 2009 Jan 15.

Allan Wilson Centre for Molecular Ecology and Evolution, Institute of Molecular BioSciences, Massey University, Auckland, New Zealand.

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http://dx.doi.org/10.1093/molbev/msp005DOI Listing
April 2009

Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:
David R Bentley Shankar Balasubramanian Harold P Swerdlow Geoffrey P Smith John Milton Clive G Brown Kevin P Hall Dirk J Evers Colin L Barnes Helen R Bignell Jonathan M Boutell Jason Bryant Richard J Carter R Keira Cheetham Anthony J Cox Darren J Ellis Michael R Flatbush Niall A Gormley Sean J Humphray Leslie J Irving Mirian S Karbelashvili Scott M Kirk Heng Li Xiaohai Liu Klaus S Maisinger Lisa J Murray Bojan Obradovic Tobias Ost Michael L Parkinson Mark R Pratt Isabelle M J Rasolonjatovo Mark T Reed Roberto Rigatti Chiara Rodighiero Mark T Ross Andrea Sabot Subramanian V Sankar Aylwyn Scally Gary P Schroth Mark E Smith Vincent P Smith Anastassia Spiridou Peta E Torrance Svilen S Tzonev Eric H Vermaas Klaudia Walter Xiaolin Wu Lu Zhang Mohammed D Alam Carole Anastasi Ify C Aniebo David M D Bailey Iain R Bancarz Saibal Banerjee Selena G Barbour Primo A Baybayan Vincent A Benoit Kevin F Benson Claire Bevis Phillip J Black Asha Boodhun Joe S Brennan John A Bridgham Rob C Brown Andrew A Brown Dale H Buermann Abass A Bundu James C Burrows Nigel P Carter Nestor Castillo Maria Chiara E Catenazzi Simon Chang R Neil Cooley Natasha R Crake Olubunmi O Dada Konstantinos D Diakoumakos Belen Dominguez-Fernandez David J Earnshaw Ugonna C Egbujor David W Elmore Sergey S Etchin Mark R Ewan Milan Fedurco Louise J Fraser Karin V Fuentes Fajardo W Scott Furey David George Kimberley J Gietzen Colin P Goddard George S Golda Philip A Granieri David E Green David L Gustafson Nancy F Hansen Kevin Harnish Christian D Haudenschild Narinder I Heyer Matthew M Hims Johnny T Ho Adrian M Horgan Katya Hoschler Steve Hurwitz Denis V Ivanov Maria Q Johnson Terena James T A Huw Jones Gyoung-Dong Kang Tzvetana H Kerelska Alan D Kersey Irina Khrebtukova Alex P Kindwall Zoya Kingsbury Paula I Kokko-Gonzales Anil Kumar Marc A Laurent Cynthia T Lawley Sarah E Lee Xavier Lee Arnold K Liao Jennifer A Loch Mitch Lok Shujun Luo Radhika M Mammen John W Martin Patrick G McCauley Paul McNitt Parul Mehta Keith W Moon Joe W Mullens Taksina Newington Zemin Ning Bee Ling Ng Sonia M Novo Michael J O'Neill Mark A Osborne Andrew Osnowski Omead Ostadan Lambros L Paraschos Lea Pickering Andrew C Pike Alger C Pike D Chris Pinkard Daniel P Pliskin Joe Podhasky Victor J Quijano Come Raczy Vicki H Rae Stephen R Rawlings Ana Chiva Rodriguez Phyllida M Roe John Rogers Maria C Rogert Bacigalupo Nikolai Romanov Anthony Romieu Rithy K Roth Natalie J Rourke Silke T Ruediger Eli Rusman Raquel M Sanches-Kuiper Martin R Schenker Josefina M Seoane Richard J Shaw Mitch K Shiver Steven W Short Ning L Sizto Johannes P Sluis Melanie A Smith Jean Ernest Sohna Sohna Eric J Spence Kim Stevens Neil Sutton Lukasz Szajkowski Carolyn L Tregidgo Gerardo Turcatti Stephanie Vandevondele Yuli Verhovsky Selene M Virk Suzanne Wakelin Gregory C Walcott Jingwen Wang Graham J Worsley Juying Yan Ling Yau Mike Zuerlein Jane Rogers James C Mullikin Matthew E Hurles Nick J McCooke John S West Frank L Oaks Peter L Lundberg David Klenerman Richard Durbin Anthony J Smith

Nature 2008 Nov;456(7218):53-9

Illumina Cambridge Ltd. (Formerly Solexa Ltd), Chesterford Research Park, Little Chesterford, Nr Saffron Walden, Essex CB10 1XL, UK.

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http://dx.doi.org/10.1038/nature07517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2581791PMC
November 2008

New developments in ancient genomics.

Trends Ecol Evol 2008 Jul 22;23(7):386-93. Epub 2008 May 22.

Allan Wilson Centre for Molecular Ecology and Evolution, School of Biological Sciences, University of Auckland, Auckland 1010, New Zealand.

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http://dx.doi.org/10.1016/j.tree.2008.04.002DOI Listing
July 2008

Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes.

Genetics 2008 Apr;178(4):2429-32

Allan Wilson Centre for Molecular Ecology and Evolution, Institute of Molecular BioSciences, Massey University, Auckland, 0632, New Zealand.

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http://dx.doi.org/10.1534/genetics.107.086405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323827PMC
April 2008

Rapid molecular evolution in a living fossil.

Trends Genet 2008 Mar 5;24(3):106-9. Epub 2008 Feb 5.

Allan Wilson Centre for Molecular Ecology and Evolution, Institute of Molecular BioSciences, Massey University, Auckland, New Zealand.

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http://dx.doi.org/10.1016/j.tig.2007.12.002DOI Listing
March 2008

Chromophore fluorination enhances crystallization and stability of soluble anthradithiophene semiconductors.

J Am Chem Soc 2008 Mar 9;130(9):2706-7. Epub 2008 Feb 9.

Department of Chemistry, University of Kentucky, Lexington, Kentucky 40506, USA.

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http://dx.doi.org/10.1021/ja073235kDOI Listing
March 2008

Efficient solution-processed photovoltaic cells based on an anthradithiophene/fullerene blend.

J Am Chem Soc 2007 Jul 27;129(29):9144-9. Epub 2007 Jun 27.

Department of Materials Science and Engineering, Cornell University, Ithaca, New York 14853, USA.

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http://pubs.acs.org/doi/abs/10.1021/ja072147x
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http://dx.doi.org/10.1021/ja072147xDOI Listing
July 2007

Pancreatic tuberculosis-abdominal tuberculosis presenting as pancreatic abscesses and colonic perforation.

World J Gastroenterol 2007 Jan;13(3):478-9

Department of Surgical Gastroenterology, Sri Ramachandra Medical College and Research Institute, 67, Ramasamy salai, K K Nagar, Chennai 600078, Tamilnadu, India.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4065910PMC
http://dx.doi.org/10.3748/wjg.v13.i3.478DOI Listing
January 2007

Higher intensity of purifying selection on >90% of the human genes revealed by the intrinsic replacement mutation rates.

Mol Biol Evol 2006 Dec 18;23(12):2283-7. Epub 2006 Sep 18.

Center for Evolutionary Functional Genomics, The Biodesign Institute, Arizona State University, AZ, USA.

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http://dx.doi.org/10.1093/molbev/msl123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072915PMC
December 2006

Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome.

BMC Genomics 2006 Dec 5;7:306. Epub 2006 Dec 5.

Center for Evolutionary Functional Genomics, The Biodesign Institute and School of Life Sciences, Arizona State University, Tempe, Arizona 85287-5301, USA.

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http://dx.doi.org/10.1186/1471-2164-7-306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1702542PMC
December 2006

Signatures of ecological resource availability in the animal and plant proteomes.

Mol Biol Evol 2006 Oct 26;23(10):1946-51. Epub 2006 Jul 26.

School of Life Sciences, Arizona State University, USA.

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http://dx.doi.org/10.1093/molbev/msl068DOI Listing
October 2006

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.

Genetics 2004 Sep;168(1):373-81

Center for Evolutionary Functional Genomics, The Biodesign Institute, Arizona State University, Tempe 85287-4501, USA.

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http://dx.doi.org/10.1534/genetics.104.028944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1448110PMC
September 2004

Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks.

Mol Biol Evol 2004 Jan 29;21(1):36-44. Epub 2003 Aug 29.

Center for Evolutionary Functional Genomics, Arizona Biodesign Institute, and School of Life Sciences, Arizona State University, USA.

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http://dx.doi.org/10.1093/molbev/msg236DOI Listing
January 2004

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

BMC Bioinformatics 2002 17;3. Epub 2002 Jan 17.

Institute for Cellular and Molecular Biology, Section of Integrative Biology, University of Texas at Austin, 2500 Speedway, Austin, TX 78712-1095, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC65690PMC
November 2003

Patterns of transitional mutation biases within and among mammalian genomes.

Mol Biol Evol 2003 Jun 25;20(6):988-93. Epub 2003 Apr 25.

Center for Evolutionary Functional Genomics and Department of Biology, Arizona State University, USA.

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http://dx.doi.org/10.1093/molbev/msg113DOI Listing
June 2003

Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes.

Genome Res 2003 May;13(5):838-44

Center for Evolutionary Functional Genomics, Arizona Biodesign Institute, Department of Biology, Arizona State University, Tempe, Arizona 85287-1501, USA.

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http://dx.doi.org/10.1101/gr.1152803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430942PMC
May 2003

Mutation rates in mammalian genomes.

Proc Natl Acad Sci U S A 2002 Jan 15;99(2):803-8. Epub 2002 Jan 15.

Department of Biology, Arizona State University, Tempe, AZ 85287-1501, USA.

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http://kumarlab.net/pdf_new/KumarSubramanian02.pdf
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http://www.pnas.org/cgi/doi/10.1073/pnas.022629899
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http://dx.doi.org/10.1073/pnas.022629899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC117386PMC
January 2002