Publications by authors named "Sang-Haeng Choi"

67Publications

Lactobacillus plantarum HAC01 regulates gut microbiota and adipose tissue accumulation in a diet-induced obesity murine model.

Appl Microbiol Biotechnol 2017 Feb 17;101(4):1605-1614. Epub 2016 Nov 17.

Advanced Green Energy and Environment Institute (AGEE), Handong Global University, 558 Handong-Ro, 3, Heunghae-eup, Buk-gu, Pohang, Gyungbuk, 37673, South Korea.

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http://dx.doi.org/10.1007/s00253-016-7953-2DOI Listing
February 2017

Profiling of the bacteria responsible for pyogenic liver abscess by 16S rRNA gene pyrosequencing.

J Microbiol 2014 Jun 29;52(6):504-9. Epub 2014 May 29.

Department of Radiology, Sungkyunkwan University School of Medicine, Changwon, 630-522, Republic of Korea.

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http://dx.doi.org/10.1007/s12275-014-4241-7DOI Listing
June 2014

Genome sequence of Methanobrevibacter sp. strain jh1, isolated from rumen of Korean native cattle.

Genome Announc 2013 Jan 28;1(1). Epub 2013 Feb 28.

Korean Collection for Type Cultures, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon, Republic of Korea.

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http://dx.doi.org/10.1128/genomeA.00002-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3587918PMC
January 2013

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://www.nature.com/doifinder/10.1038/nature11622
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012

Genome sequence of Oscillibacter ruminantium strain GH1, isolated from rumen of Korean native cattle.

J Bacteriol 2012 Nov;194(22):6362

Korean Collection for Type Cultures, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01677-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486395PMC
November 2012

Draft genome sequence of Fusobacterium nucleatum ChDC F128, isolated from a periodontitis lesion.

J Bacteriol 2012 Nov;194(22):6322-3

Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University, Gwangju, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01600-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486408PMC
November 2012

easySEARCH: A user-friendly bioinformatics program that enables BLAST searching with a massive number of query sequences.

Bioinformation 2012 24;8(16):792-4. Epub 2012 Aug 24.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 305-806, Korea ; These authors contributed equally to this work.

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http://www.bioinformation.net/008/97320630008792.htm
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http://dx.doi.org/10.6026/97320630008792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3449384PMC
October 2012

CACG: a database for comparative analysis of conjoined genes.

Genomics 2012 Jul 11;100(1):14-7. Epub 2012 May 11.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1016/j.ygeno.2012.05.005DOI Listing
July 2012

Genome sequence of the probiotic bacterium Sporolactobacillus vineae SL153T.

J Bacteriol 2012 Jun;194(11):3015-6

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon, Republic of Korea.

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http://jb.asm.org/cgi/doi/10.1128/JB.00452-12
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http://dx.doi.org/10.1128/JB.00452-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370620PMC
June 2012

Analysis of indel variations in the human disease-associated genes CDKN2AIP, WDR66, USP20 and OR7C2 in a Korean population.

J Genet 2012 Feb 29;91(1):e1-e11. Epub 2012 Feb 29.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea.

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February 2012

Genome sequence of Myroides injenensis M09-0166(T), isolated from clinical specimens.

J Bacteriol 2012 May;194(10):2748-9

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon, Republic of Korea.

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http://dx.doi.org/10.1128/JB.00276-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3347189PMC
May 2012

Genome sequence of Lactobacillus fructivorans KCTC 3543.

J Bacteriol 2012 Apr;194(8):2111-2

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.

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http://dx.doi.org/10.1128/JB.00075-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3318491PMC
April 2012

Novel mechanism of conjoined gene formation in the human genome.

Funct Integr Genomics 2012 Mar 10;12(1):45-61. Epub 2012 Jan 10.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 305-806, South Korea.

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http://dx.doi.org/10.1007/s10142-011-0260-1DOI Listing
March 2012

Genome sequence of Leuconostoc carnosum KCTC 3525.

J Bacteriol 2011 Nov;193(21):6100-1

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.06028-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194921PMC
November 2011

Genome sequence of Lactobacillus versmoldensis KCTC 3814.

J Bacteriol 2011 Oct;193(19):5589-90

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05708-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187389PMC
October 2011

Draft genome sequence of Lactobacillus malefermentans KCTC 3548.

J Bacteriol 2011 Oct;193(19):5537

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05710-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466PMC
October 2011

Genome sequence of Lactobacillus suebicus KCTC 3549.

J Bacteriol 2011 Oct;193(19):5532-3

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05814-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187403PMC
October 2011

Draft genome sequence of Shewanella sp. strain HN-41, which produces arsenic-sulfide nanotubes.

J Bacteriol 2011 Sep;193(18):5039-40

School of Environmental Science and Engineering, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05578-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165682PMC
September 2011

Draft genome sequence of Lactobacillus zeae KCTC 3804.

J Bacteriol 2011 Sep;193(18):5023

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05602-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165655PMC
September 2011

Draft genome sequence of Lactobacillus mali KCTC 3596.

J Bacteriol 2011 Sep 8;193(18):5037. Epub 2011 Jul 8.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05686-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165658PMC
September 2011

Genome sequence of Lactobacillus cypricasei KCTC 13900.

J Bacteriol 2011 Sep 8;193(18):5053-4. Epub 2011 Jul 8.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05659-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165712PMC
September 2011

Developmental transcriptomic features of the carcinogenic liver fluke, Clonorchis sinensis.

PLoS Negl Trop Dis 2011 Jun 28;5(6):e1208. Epub 2011 Jun 28.

Department of Medical Environmental Biology and Research Center for Biomolecules and Biosystems, Chung-Ang University College of Medicine, Seoul, Republic of Korea.

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http://dx.doi.org/10.1371/journal.pntd.0001208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125140PMC
June 2011

Genome sequence of Leuconostoc pseudomesenteroides KCTC 3652.

J Bacteriol 2011 Aug 24;193(16):4299. Epub 2011 Jun 24.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05433-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3147694PMC
August 2011

Genome sequence of Acinetobacter sp. strain P8-3-8, isolated from Fistularia commersonii in Vietnam.

J Bacteriol 2011 Aug 17;193(16):4288-9. Epub 2011 Jun 17.

Biotechnology Research Division, National Fisheries Research and Development Institute, 152-1 Haeanro, Gijang-up, Gijang-gun, Busan 619-705, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05333-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3147709PMC
August 2011

Draft genome sequence of Kocuria rhizophila P7-4.

J Bacteriol 2011 Aug 17;193(16):4286-7. Epub 2011 Jun 17.

Biotechnology Research Division, National Fisheries Research and Development Institute, 152-1 Haeanro, Gijang-up, Gijang-gun, Busan 619-705, Republic of Korea.

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http://dx.doi.org/10.1128/JB.05334-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3147690PMC
August 2011

Major chimpanzee-specific structural changes in sperm development-associated genes.

Funct Integr Genomics 2011 Sep 12;11(3):507-17. Epub 2011 Apr 12.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, South Korea.

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http://dx.doi.org/10.1007/s10142-011-0220-9DOI Listing
September 2011

Genome sequence of Lactobacillus farciminis KCTC 3681.

J Bacteriol 2011 Apr 21;193(7):1790-1. Epub 2011 Jan 21.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.00003-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067648PMC
April 2011

Genome sequence of Leuconostoc inhae KCTC 3774, isolated from Kimchi.

J Bacteriol 2011 Mar 23;193(5):1278-9. Epub 2010 Dec 23.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01458-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067576PMC
March 2011

Genome sequence of Lactobacillus animalis KCTC 3501.

J Bacteriol 2011 Mar 23;193(5):1280-1. Epub 2010 Dec 23.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01505-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067609PMC
March 2011

Genome sequence of Lactobacillus coryniformis subsp. coryniformis KCTC 3167.

J Bacteriol 2011 Feb 10;193(4):1014-5. Epub 2010 Dec 10.

Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01394-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3028671PMC
February 2011

Genome Sequence of Leuconostoc gelidum KCTC 3527, Isolated from Kimchi.

J Bacteriol 2011 Feb 3;193(3):799-800. Epub 2010 Dec 3.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01371-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3021212PMC
February 2011

Genome Sequence of Weissella cibaria KACC 11862.

J Bacteriol 2011 Feb 19;193(3):797-8. Epub 2010 Nov 19.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01342-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3021225PMC
February 2011

Genome sequence of Leuconostoc fallax KCTC 3537.

J Bacteriol 2011 Jan 12;193(2):588-9. Epub 2010 Nov 12.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), , Daejeon, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01300-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3019822PMC
January 2011

Genome sequence of Leuconostoc argentinum KCTC 3773.

J Bacteriol 2010 Dec 15;192(24):6490-1. Epub 2010 Oct 15.

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01148-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3008539PMC
December 2010

Comparative genomic analysis of the false killer whale (Pseudorca crassidens) LMBR1 locus.

Genome 2010 Sep;53(9):658-66

Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-806, Korea.

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http://dx.doi.org/10.1139/g10-043DOI Listing
September 2010

Whole human exome capture for high-throughput sequencing.

Genome 2010 Jul;53(7):568-74

Division of Malaria and Parasitic Diseases, National Institute of Health, Seoul, Korea.

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http://dx.doi.org/10.1139/g10-025DOI Listing
July 2010

Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon.

J Bacteriol 2010 Sep 2;192(17):4528-9. Epub 2010 Jul 2.

Department of Life and Nanopharmaceutical Sciences and Department of Biology, Kyung Hee University, Seoul, Republic of Korea.

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http://dx.doi.org/10.1128/JB.00663-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937367PMC
September 2010

Comparative analysis of expressed sequence tags from the white-rot fungi (Phanerochaete chrysosporium).

Mol Cells 2010 Feb;29(2):131-44

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.

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http://dx.doi.org/10.1007/s10059-010-0018-yDOI Listing
February 2010

Evolutionary characterization of a highly repetitive sequence identified from the false killer whale (Pseudorca crassidens).

Genes Genet Syst 2009 Apr;84(2):185-9

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Baejeon, Korea.

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http://dx.doi.org/10.1266/ggs.84.185DOI Listing
April 2009

GarlicESTdb: an online database and mining tool for garlic EST sequences.

BMC Plant Biol 2009 May 18;9:61. Epub 2009 May 18.

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-306, Korea.

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http://dx.doi.org/10.1186/1471-2229-9-61DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689220PMC
May 2009

PESTAS: a web server for EST analysis and sequence mining.

Bioinformatics 2009 Jul 4;25(14):1846-8. Epub 2009 May 4.

Industrial Biotechnology & Bioenergy Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-806, Korea.

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http://dx.doi.org/10.1093/bioinformatics/btp293DOI Listing
July 2009

Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.

J Bacteriol 2009 Jan 14;191(2):678-9. Epub 2008 Nov 14.

Korea Research Institute of Bioscience and Biotechnology, 111 Gwahangno, Yuseong, Daejeon 305-806, Korea.

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http://dx.doi.org/10.1128/JB.01515-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2620821PMC
January 2009

Comparative genomic analysis of the whale (Pseudorca crassidens) PRNP locus.

Genome 2008 Jun;51(6):452-64

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-806, Korea.

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http://dx.doi.org/10.1139/G08-029DOI Listing
June 2008

Complete genome sequence of Leuconostoc citreum KM20.

J Bacteriol 2008 Apr 15;190(8):3093-4. Epub 2008 Feb 15.

Systems Microbiology Research Center, KRIBB, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, South Korea.

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http://dx.doi.org/10.1128/JB.01862-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2293239PMC
April 2008

Comparative genomic organization of the human and bovine PRNP locus.

Genomics 2006 May 7;87(5):598-607. Epub 2006 Feb 7.

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, 52, Oun-dong, Yusong-gu, Daejeon 305-333, Korea.

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http://dx.doi.org/10.1016/j.ygeno.2005.12.012DOI Listing
May 2006

Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent.

Nucleic Acids Res 2005 13;33(22):7066-73. Epub 2005 Dec 13.

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yuseong, Daejeon 305-600, Republic of Korea.

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http://dx.doi.org/10.1093/nar/gki1016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1312362PMC
December 2005

Identification of novel allele on the locus 47z (DXYS5) in the Korean population.

J Hum Genet 2005 1;50(12):664-6. Epub 2005 Oct 1.

Genome Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 305-333 Daejeon, South Korea.

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http://dx.doi.org/10.1007/s10038-005-0305-1DOI Listing
February 2006

Characterization of a small cryptic plasmid, pHP51, from a Korean isolate of strain 51 of Helicobacter pylori.

Plasmid 2003 Sep;50(2):145-51

Department of Microbiology, Gyeongsang Institute of Health Science, Gyeongsang National University College of Medicine, 90 Chiram-dong, Jinju, Gyeongsangnam-do 660-751, South Korea.

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http://dx.doi.org/10.1016/s0147-619x(03)00059-3DOI Listing
September 2003