Sandro Morganella

Sandro Morganella

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Sandro Morganella

Sandro Morganella

Publications by authors named "Sandro Morganella"

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A Compendium of Mutational Signatures of Environmental Agents.

Cell 2019 05 11;177(4):821-836.e16. Epub 2019 Apr 11.

Academic Department of Medical Genetics, School of Clinical Medicine, University of Cambridge, Cambridge CB2 9NB, UK; MRC Cancer Unit, University of Cambridge, Cambridge CB2 0XZ, UK; Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674193026
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http://dx.doi.org/10.1016/j.cell.2019.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6506336PMC
May 2019

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2019 02;566(7742):E1

Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.

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http://www.nature.com/articles/s41586-019-0883-2
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http://dx.doi.org/10.1038/s41586-019-0883-2DOI Listing
February 2019

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis.

Genome Res 2018 09 13;28(9):1264-1271. Epub 2018 Aug 13.

Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.

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http://dx.doi.org/10.1101/gr.231688.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120622PMC
September 2018

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.

PLoS Comput Biol 2018 03 9;14(3):e1006002. Epub 2018 Mar 9.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1006002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5862484PMC
March 2018

Short inverted repeats contribute to localized mutability in human somatic cells.

Nucleic Acids Res 2017 Nov;45(19):11213-11221

Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1093/nar/gkx731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737083PMC
November 2017

Mutational Signatures in Breast Cancer: The Problem at the DNA Level.

Clin Cancer Res 2017 Jun;23(11):2617-2629

Wellcome Trust Sanger Institute, Hinxton Genome Campus, Cambridge, United Kingdom.

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http://dx.doi.org/10.1158/1078-0432.CCR-16-2810DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5458139PMC
June 2017

Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2016 06 2;534(7605):47-54. Epub 2016 May 2.

Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature17676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910866PMC
June 2016

The genome as a record of environmental exposure.

Mutagenesis 2015 Nov 6;30(6):763-70. Epub 2015 Oct 6.

Analytical and Environmental Sciences Division, MRC-PHE Centre for Environment and Health, King's College London, Franklin-Wilkins Building, London SE1 9NH, UK,

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http://dx.doi.org/10.1093/mutage/gev073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4637815PMC
November 2015

VEGAWES: variational segmentation on whole exome sequencing for copy number detection.

BMC Bioinformatics 2015 Sep 29;16:315. Epub 2015 Sep 29.

Computational Sciences and Engineering, Qatar Computing Research Institute, Doha, P. O. Box 5825, Qatar.

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http://dx.doi.org/10.1186/s12859-015-0748-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4587906PMC
September 2015

VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.

Bioinformatics 2012 Oct 18;28(19):2512-4. Epub 2012 Jul 18.

Department of Science, University of Sannio, 82100 Benevento, Italy.

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http://dx.doi.org/10.1093/bioinformatics/bts453DOI Listing
October 2012

Finding recurrent copy number alterations preserving within-sample homogeneity.

Bioinformatics 2011 Nov 25;27(21):2949-56. Epub 2011 Aug 25.

Department of Science, University of Sannio, 82100, Benevento, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btr488DOI Listing
November 2011

VEGA: variational segmentation for copy number detection.

Bioinformatics 2010 Dec 19;26(24):3020-7. Epub 2010 Oct 19.

Department of Biological and Environmental Studies, University of Sannio, Benevento, Italy.

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http://bioinformatics.oxfordjournals.org/content/26/24/3020.
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https://www.bioconductor.org/packages/3.3/bioc/vignettes/Veg
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btq586DOI Listing
December 2010

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.

BMC Bioinformatics 2010 Mar 25;11:154. Epub 2010 Mar 25.

Department of Biological and Environmental Studies, University of Sannio, Benevento, I-82100, Italy.

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http://dx.doi.org/10.1186/1471-2105-11-154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862045PMC
March 2010

IRIS: a method for reverse engineering of regulatory relations in gene networks.

BMC Bioinformatics 2009 Dec 23;10:444. Epub 2009 Dec 23.

Department of Biological and Environmental Sciences, University of Sannio, Benevento, Italy.

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http://www.biomedcentral.com/1471-2105/10/444
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http://dx.doi.org/10.1186/1471-2105-10-444DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2813854PMC
December 2009