Sander R Piersma

Sander R Piersma

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Sander R Piersma

Publications by authors named "Sander R Piersma"

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Proteomic Analysis of miR-195 and miR-497 Replacement Reveals Potential Candidates that Increase Sensitivity to Oxaliplatin in MSI/P53wt Colorectal Cancer Cells.

Cells 2019 Sep 19;8(9). Epub 2019 Sep 19.

Department of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, VU University Medical Center, 1081HV Amsterdam, The Netherlands.

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http://dx.doi.org/10.3390/cells8091111DOI Listing
September 2019

Tumor Heterogeneity Underlies Differential Cisplatin Sensitivity in Mouse Models of Small-Cell Lung Cancer.

Cell Rep 2019 Jun;27(11):3345-3358.e4

Oncode Institute, Division of Molecular Genetics, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands; Division of Molecular Genetics, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.05.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581744PMC
June 2019

Proteome analysis of non-small cell lung cancer cell line secretomes and patient sputum reveals biofluid biomarker candidates for cisplatin response prediction.

J Proteomics 2019 Mar 30;196:106-119. Epub 2019 Jan 30.

Amsterdam UMC, Vrije Universiteit Amsterdam, Department of Medical Oncology, Cancer Center Amsterdam, 1081 HV Amsterdam, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2019.01.018DOI Listing
March 2019

Re-assessment of the high-grade serous ovarian cancer phosphoproteome - Identification of kinase candidates in TCGA tumors for future clinical intervention.

EBioMedicine 2019 Mar 21;41:34-35. Epub 2019 Feb 21.

Amsterdam UMC, OncoProteomics Laboratory, Department Medical Oncology, location VUmc, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2019.02.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442312PMC
March 2019

Changes in the urinary extracellular vesicle proteome are associated with nephronophthisis-related ciliopathies.

J Proteomics 2019 Feb 30;192:27-36. Epub 2018 Jul 30.

Department of Genetics, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2018.07.008DOI Listing
February 2019

Multidrug-resistant transporter expression does not always result in drug resistance.

Cancer Sci 2018 Oct 8;109(10):3360-3362. Epub 2018 Sep 8.

Medical Oncology, Amsterdam UMC, Cancer Center Amsterdam, VU University Medical Center, Amsterdam, The Netherlands.

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http://doi.wiley.com/10.1111/cas.13756
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http://dx.doi.org/10.1111/cas.13756DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172061PMC
October 2018

EspH is a hypervirulence factor for Mycobacterium marinum and essential for the secretion of the ESX-1 substrates EspE and EspF.

PLoS Pathog 2018 08 13;14(8):e1007247. Epub 2018 Aug 13.

Section Molecular Microbiology, Amsterdam Institute of Molecules, Medicines & Systems, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1371/journal.ppat.1007247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107294PMC
August 2018

Exploration of the platelet proteome in patients with early-stage cancer.

J Proteomics 2018 04 10;177:65-74. Epub 2018 Feb 10.

OncoProteomics Laboratory, Department of Medical Oncology, Cancer Center Amsterdam, VU Medical Center, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2018.02.011DOI Listing
April 2018

Novel Stool-Based Protein Biomarkers for Improved Colorectal Cancer Screening: A Case-Control Study.

Ann Intern Med 2017 Dec 21;167(12):855-866. Epub 2017 Nov 21.

From Netherlands Cancer Institute, Amsterdam; VU University Medical Center, Amsterdam; MDxHealth, Herstal, and Ghent University, Ghent, Belgium; and Kennemer Gasthuis, Haarlem, the Netherlands.

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http://dx.doi.org/10.7326/M17-1068DOI Listing
December 2017

Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify.

Mol Cell Proteomics 2017 10 26;16(10):1850-1863. Epub 2017 Jul 26.

From the ‡Translational Gastrointestinal Oncology, Department of Pathology, Netherlands Cancer Institute, Amsterdam, the Netherlands;

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http://dx.doi.org/10.1074/mcp.TIR117.000056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5629268PMC
October 2017

Phosphotyrosine-based-phosphoproteomics scaled-down to biopsy level for analysis of individual tumor biology and treatment selection.

J Proteomics 2017 06 23;162:99-107. Epub 2017 Apr 23.

Department of Medical Oncology, VU University Medical Center, De Boelelaan 1117, 1081 HV, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2017.04.014DOI Listing
June 2017

Mycosins Are Required for the Stabilization of the ESX-1 and ESX-5 Type VII Secretion Membrane Complexes.

MBio 2016 10 18;7(5). Epub 2016 Oct 18.

Section Molecular Microbiology, Amsterdam Institute of Molecules, Medicines and Systems, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands

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http://dx.doi.org/10.1128/mBio.01471-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5082899PMC
October 2016

Multi-omics profile of the mouse dentate gyrus after kainic acid-induced status epilepticus.

Sci Data 2016 Aug 16;3:160068. Epub 2016 Aug 16.

Neuroscience Program, Swammerdam Institute for Life Sciences, Faculty of Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.

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http://dx.doi.org/10.1038/sdata.2016.68DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4986542PMC
August 2016

Sunitinib activates Axl signaling in renal cell cancer.

Int J Cancer 2016 Jun 1;138(12):3002-10. Epub 2016 Mar 1.

Department of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1002/ijc.30022DOI Listing
June 2016

Peptide-mediated 'miniprep' isolation of extracellular vesicles is suitable for high-throughput proteomics.

EuPA Open Proteom 2016 Jun 22;11:11-15. Epub 2016 Feb 22.

OncoProteomics Laboratory, Dept. Medical Oncology, VUmc-Cancer Center Amsterdam, VU University Medical Center, The Netherlands.

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http://dx.doi.org/10.1016/j.euprot.2016.02.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5988555PMC
June 2016

Alternative splice variant of the thiazide-sensitive NaCl cotransporter: a novel player in renal salt handling.

Am J Physiol Renal Physiol 2016 Feb 11;310(3):F204-16. Epub 2015 Nov 11.

Department of Physiology, Radboud University Medical Center, Nijmegen, The Netherlands;

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http://dx.doi.org/10.1152/ajprenal.00429.2015DOI Listing
February 2016

Feasibility of label-free phosphoproteomics and application to base-line signaling of colorectal cancer cell lines.

J Proteomics 2015 Sep 1;127(Pt B):247-58. Epub 2015 Apr 1.

OncoProteomics Laboratory, VU University Medical Center, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2015.03.019DOI Listing
September 2015

Evaluation of different phospho-tyrosine antibodies for label-free phosphoproteomics.

J Proteomics 2015 Sep 16;127(Pt B):259-63. Epub 2015 Apr 16.

Department of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2015.04.006DOI Listing
September 2015

MicroRNA-124 and -137 cooperativity controls caspase-3 activity through BCL2L13 in hippocampal neural stem cells.

Sci Rep 2015 Jul 24;5:12448. Epub 2015 Jul 24.

Center for Neuroscience, Swammerdam Institute for Life Sciences, University of Amsterdam, SciencePark 904, 1098XH, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1038/srep12448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4513647PMC
July 2015

Genome-wide siRNA Screen Identifies the Radiosensitizing Effect of Downregulation of MASTL and FOXM1 in NSCLC.

Mol Cancer Ther 2015 Jun 25;14(6):1434-44. Epub 2015 Mar 25.

Department of Otolaryngology-Head and Neck Surgery, VU University Medical Center, Amsterdam, the Netherlands.

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http://dx.doi.org/10.1158/1535-7163.MCT-14-0846DOI Listing
June 2015

Exosomal sorting of the viral oncoprotein LMP1 is restrained by TRAF2 association at signalling endosomes.

J Extracell Vesicles 2015 10;4:26334. Epub 2015 Apr 10.

Department of Pathology, Cancer Center Amsterdam, VU University Medical Center, Amsterdam, The Netherlands;

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394166PMC
http://dx.doi.org/10.3402/jev.v4.26334DOI Listing
April 2015

Decoration of outer membrane vesicles with multiple antigens by using an autotransporter approach.

Appl Environ Microbiol 2014 Sep 18;80(18):5854-65. Epub 2014 Jul 18.

Section Molecular Microbiology, Department of Molecular Cell Biology, Faculty of Earth and Life Sciences, VU University, Amsterdam, The Netherlands Abera Bioscience AB, Stockholm, Sweden

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http://dx.doi.org/10.1128/AEM.01941-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4178611PMC
September 2014

PKCα-specific phosphorylation of the troponin complex in human myocardium: a functional and proteomics analysis.

PLoS One 2013 7;8(10):e74847. Epub 2013 Oct 7.

Laboratory for Physiology, Institute for Cardiovascular Research, VU Medical Center, Amsterdam, The Netherlands ; Johns Hopkins Bayview Proteomics Center, Department of Medicine, School of Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074847PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3792062PMC
June 2014

Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset.

J Proteomics 2014 Jun 24;106:191-204. Epub 2014 Apr 24.

OncoProteomics Laboratory, Department of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2014.04.028DOI Listing
June 2014

Proteomics of differential extraction fractions enriched for chromatin-binding proteins from colon adenoma and carcinoma tissues.

Biochim Biophys Acta 2014 May 17;1844(5):1034-43. Epub 2013 Dec 17.

OncoProteomics Laboratory, Dept. of Medical Oncology, VU University Medical Center, De Boelelaan 1117, 1081HV Amsterdam, The Netherlands. Electronic address:

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http://ac.els-cdn.com/S1570963913004287/1-s2.0-S157096391300
Web Search
http://linkinghub.elsevier.com/retrieve/pii/S157096391300428
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http://dx.doi.org/10.1016/j.bbapap.2013.12.006DOI Listing
May 2014

Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling.

J Proteomics 2014 Mar 10;99:26-39. Epub 2014 Jan 10.

Department of Pathology (Tumor Profiling Unit), VU University Medical Center, Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2014.01.001DOI Listing
March 2014

Analysis of SecA2-dependent substrates in Mycobacterium marinum identifies protein kinase G (PknG) as a virulence effector.

Cell Microbiol 2014 Feb 6;16(2):280-95. Epub 2013 Nov 6.

Department of Medical Microbiology and Infection Control, VU University Medical Center, van der Boechorststraat 7, 1081 BT, Amsterdam, The Netherlands; Department of Molecular Microbiology, Institute of Molecular Cell Biology, VU University, de Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1111/cmi.12221DOI Listing
February 2014

Exosomal ITGA3 interferes with non-cancerous prostate cell functions and is increased in urine exosomes of metastatic prostate cancer patients.

J Extracell Vesicles 2013 23;2. Epub 2013 Dec 23.

OncoProteomics Laboratory, Department of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands.

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http://dx.doi.org/10.3402/jev.v2i0.22097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873120PMC
December 2013

The secretome of colon cancer stem cells contains drug-metabolizing enzymes.

J Proteomics 2013 Oct 5;91:84-96. Epub 2013 Jul 5.

Department of Surgery, University Medical Center Utrecht, G04-228, PO Box 85500, 3508GA Utrecht, The Netherlands.

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http://dx.doi.org/10.1016/j.jprot.2013.06.027DOI Listing
October 2013

Proteomics of genetically engineered mouse mammary tumors identifies fatty acid metabolism members as potential predictive markers for cisplatin resistance.

Mol Cell Proteomics 2013 May 8;12(5):1319-34. Epub 2013 Feb 8.

OncoProteomics Laboratory, Department of Medical Oncology, VU University Medical Center, De Boelelaan 1117, 1081HV Amsterdam, The Netherlands.

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http://dx.doi.org/10.1074/mcp.M112.024182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3650342PMC
May 2013

Whole gel processing procedure for GeLC-MS/MS based proteomics.

Proteome Sci 2013 Apr 23;11(1):17. Epub 2013 Apr 23.

Department of Medical Oncology, OncoProteomics Laboratory, VU University Medical Center, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1186/1477-5956-11-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3656797PMC
April 2013

Composition of the type VII secretion system membrane complex.

Mol Microbiol 2012 Oct 27;86(2):472-84. Epub 2012 Aug 27.

Department of Medical Microbiology and Infection Control, VU University Medical Center, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1111/j.1365-2958.2012.08206.xDOI Listing
October 2012

Specific chaperones for the type VII protein secretion pathway.

J Biol Chem 2012 Sep 29;287(38):31939-47. Epub 2012 Jul 29.

Department of Medical Microbiology and Infection Control, VU University Medical Center, 1081 BT Amsterdam, The Netherlands.

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http://dx.doi.org/10.1074/jbc.M112.397596DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3442526PMC
September 2012

The proteome of the locus ceruleus in Parkinson's disease: relevance to pathogenesis.

Brain Pathol 2012 Jul 8;22(4):485-98. Epub 2011 Nov 8.

Department of Anatomy and Neurosciences, Section Functional Neuroanatomy, Neuroscience Campus Amsterdam, VU University Medical Center Amsterdam, the Netherlands.

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http://dx.doi.org/10.1111/j.1750-3639.2011.00540.xDOI Listing
July 2012

Proteomics of mouse BRCA1-deficient mammary tumors identifies DNA repair proteins with potential diagnostic and prognostic value in human breast cancer.

Mol Cell Proteomics 2012 Jul 24;11(7):M111.013334. Epub 2012 Feb 24.

Oncoproteomics Laboratory, Department of Medical Oncology, VU University Medical Center, De Boelelaan 1117, 1081HV, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1074/mcp.M111.013334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394939PMC
July 2012

Label-free mass spectrometry-based proteomics for biomarker discovery and validation.

Expert Rev Mol Diagn 2012 May;12(4):343-59

Oncoproteomics Laboratory, CCA 1-60, Department of Medical Oncology, VU University Medical Center, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands.

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http://dx.doi.org/10.1586/erm.12.31DOI Listing
May 2012

Cellular imaging using matrix-enhanced and metal-assisted SIMS.

Methods Mol Biol 2010 ;656:197-208

Biomolecular Mass Spectrometry and Proteomics Group, Utrecht University, Utrecht, The Netherlands.

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http://dx.doi.org/10.1007/978-1-60761-746-4_11DOI Listing
December 2010

Strategies for kinome profiling in cancer and potential clinical applications: chemical proteomics and array-based methods.

Anal Bioanal Chem 2010 Aug 8;397(8):3163-71. Epub 2010 Jun 8.

Department of Medical Oncology, OncoProteomics Laboratory, VU University Medical Center, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands.

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http://dx.doi.org/10.1007/s00216-010-3784-7DOI Listing
August 2010

Comparison of the performance of two affinity depletion spin filters for quantitative proteomics of CSF: Evaluation of sensitivity and reproducibility of CSF analysis using GeLC-MS/MS and spectral counting.

Proteomics Clin Appl 2010 Jul 29;4(6-7):613-7. Epub 2010 Mar 29.

OncoProteomics Laboratory, Department of Medical Oncology, VUmc-Cancer Center Amsterdam, VU University Medical Center, The Netherlands.

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http://dx.doi.org/10.1002/prca.200900179DOI Listing
July 2010

Workflow comparison for label-free, quantitative secretome proteomics for cancer biomarker discovery: method evaluation, differential analysis, and verification in serum.

J Proteome Res 2010 Apr;9(4):1913-22

OncoProteomics Laboratory, Department of Medical Oncology, VUmc-Cancer Center Amsterdam, VU University Medical Center, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1021/pr901072hDOI Listing
April 2010

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics.

Bioinformatics 2010 Feb 9;26(3):363-9. Epub 2009 Dec 9.

OncoProteomics Laboratory, Department Medical Oncology, VUmc-Cancer Center Amsterdam, VU University Medical Center, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btp677DOI Listing
February 2010

Comparative protein profiling reveals minichromosome maintenance (MCM) proteins as novel potential tumor markers for meningiomas.

J Proteome Res 2010 Jan;9(1):485-94

Department of Neurology and Radiology, Massachusetts General Hospital, and Neuroscience Program, Harvard Medical School, Boston, Massachusetts, 02129, USA.

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http://dx.doi.org/10.1021/pr900834hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2810358PMC
January 2010

Proteomics of the TRAP-induced platelet releasate.

J Proteomics 2009 Feb 8;72(1):91-109. Epub 2008 Nov 8.

OncoProteomics Laboratory, Dept. of Medical Oncology, VUmc-Cancer Center Amsterdam, VU University Medical Center Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.jprot.2008.10.009DOI Listing
February 2009

Imaging mass spectrometry at cellular length scales.

Nat Protoc 2007 ;2(5):1185-96

FOM Institute for Atomic and Molecular Physics, Kruislaan 407, 1098 SJ Amsterdam, The Netherlands.

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http://dx.doi.org/10.1038/nprot.2007.117DOI Listing
January 2008

Tools and strategies for visualization of large image data sets in high-resolution imaging mass spectrometry.

Rev Sci Instrum 2007 May;78(5):053716

FOM Institute for Atomic and Molecular Physics FOM-AMOLF, Kruislaan 407, 1098 SJ Amsterdam, The Netherlands.

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http://dx.doi.org/10.1063/1.2737770DOI Listing
May 2007

Gold-enhanced biomolecular surface imaging of cells and tissue by SIMS and MALDI mass spectrometry.

Anal Chem 2006 Feb;78(3):734-42

FOM Institute for Atomic and Molecular Physics, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1021/ac0513111DOI Listing
February 2006

Proteolytic processing of the peanut allergen Ara h 3.

Mol Nutr Food Res 2005 Aug;49(8):744-55

FOM Institute for Atomic and Molecular Physics, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1002/mnfr.200500020DOI Listing
August 2005

Purification and characterization of the tungsten enzyme aldehyde:ferredoxin oxidoreductase from the hyperthermophilic denitrifier Pyrobaculum aerophilum.

J Biol Inorg Chem 2005 May 17;10(3):259-69. Epub 2005 Mar 17.

Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC, Delft, The Netherlands.

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http://link.springer.com/10.1007/s00775-005-0637-5
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http://dx.doi.org/10.1007/s00775-005-0637-5DOI Listing
May 2005

Direct molecular imaging of Lymnaea stagnalis nervous tissue at subcellular spatial resolution by mass spectrometry.

Anal Chem 2005 Feb;77(3):735-41

FOM-Institute for Atomic and Molecular Physics, Kruislaan 407, 1098 SJ Amsterdam, The Netherlands.

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http://pubs.acs.org/doi/abs/10.1021/ac048329g
Publisher Site
http://dx.doi.org/10.1021/ac048329gDOI Listing
February 2005

Subcellular imaging mass spectrometry of brain tissue.

J Mass Spectrom 2005 Feb;40(2):160-8

FOM Institute for Atomic and Molecular Physics, Kruislaan 407, 1098 SJ Amsterdam, The Netherlands.

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http://dx.doi.org/10.1002/jms.735DOI Listing
February 2005

Inhibition of nicotinoprotein (NAD+-containing) alcohol dehydrogenase by trans-4-(N,N-dimethylamino)-cinnamaldehyde binding to the active site.

J Protein Chem 2003 Jul;22(5):457-61

Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.

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http://dx.doi.org/10.1023/b:jopc.0000005461.53788.eeDOI Listing
July 2003

Aggregation of peptides during hydrolysis as a cause of reduced enzymatic extractability of soybean meal proteins.

J Agric Food Chem 2002 Jul;50(16):4512-9

Centre for Protein Technology TNO-WU, P.O. Box 8129, 6700 EV Wageningen, The Netherlands.

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http://dx.doi.org/10.1021/jf0114785DOI Listing
July 2002

Horseradish peroxidase-catalyzed oligomerization of ferulic acid on a template of a tyrosine-containing tripeptide.

J Biol Chem 2002 Jun 29;277(24):21332-40. Epub 2002 Mar 29.

Centre for Protein Technology TNO-WU, Bomenweg 2, 6700 EV Wageningen, The Netherlands.

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http://dx.doi.org/10.1074/jbc.M201679200DOI Listing
June 2002