Samuel Purvine

Samuel Purvine

UNVERIFIED PROFILE

Are you Samuel Purvine?   Register this Author

Register author
Samuel Purvine

Samuel Purvine

Publications by authors named "Samuel Purvine"

Are you Samuel Purvine?   Register this Author

100Publications

2638Reads

7Profile Views

Structure Dependent Determination of Organophosphate Targets in Mammalian Tissues Using Activity-Based Protein Profiling.

Chem Res Toxicol 2020 Feb 10;33(2):414-425. Epub 2020 Jan 10.

Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.chemrestox.9b00344DOI Listing
February 2020

Mineral Surfaces as Agents of Environmental Proteolysis: Mechanisms and Controls.

Environ Sci Technol 2019 03 28;53(6):3018-3026. Epub 2019 Feb 28.

Department of Crop and Soil Science , Oregon State University , Corvallis , Oregon 97331 , United States.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/acs.est.8b05583
Publisher Site
http://dx.doi.org/10.1021/acs.est.8b05583DOI Listing
March 2019

Single-throughput Complementary High-resolution Analytical Techniques for Characterizing Complex Natural Organic Matter Mixtures.

J Vis Exp 2019 01 7(143). Epub 2019 Jan 7.

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3791/59035DOI Listing
January 2019

Individual Variability of Protein Expression in Human Tissues.

J Proteome Res 2018 11 18;17(11):3914-3922. Epub 2018 Oct 18.

Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99336 , United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jproteome.8b00580DOI Listing
November 2018

Coupling Secretomics with Enzyme Activities To Compare the Temporal Processes of Wood Metabolism among White and Brown Rot Fungi.

Appl Environ Microbiol 2018 08 1;84(16). Epub 2018 Aug 1.

University of Minnesota, Department of Bioproducts and Biosystems Engineering, St. Paul, Minnesota, USA

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AEM.00159-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6070766PMC
August 2018

High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger.

Environ Microbiol 2017 11 20;19(11):4587-4598. Epub 2017 Oct 20.

Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Utrecht, the Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1462-2920.13923DOI Listing
November 2017

Activity-Based Probes for Isoenzyme- and Site-Specific Functional Characterization of Glutathione S-Transferases.

J Am Chem Soc 2017 11 1;139(45):16032-16035. Epub 2017 Nov 1.

Chemical Biology and Exposure Sciences, Biological Sciences Division, Pacific Northwest National Laboratory , 902 Battelle Boulevard, Richland, Washington 99352, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/jacs.7b07378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6279235PMC
November 2017

Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi.

Fungal Genet Biol 2017 09 1;106:61-75. Epub 2017 Jul 1.

Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, 266 Woods Hole Road, Woods Hole, MA 02543, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.fgb.2017.06.004DOI Listing
September 2017

Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model.

Am J Physiol Heart Circ Physiol 2017 Jul 28;313(1):H125-H137. Epub 2017 Apr 28.

Center for Developmental Therapeutics, Seattle Children's Research Institute, Seattle, Washington;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1152/ajpheart.00842.2016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5538860PMC
July 2017

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in .

mBio 2017 06 20;8(3). Epub 2017 Jun 20.

Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology, Göteborg, Sweden

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/mBio.00857-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5478895PMC
June 2017

Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica.

BMC Genomics 2016 Feb 25;17:138. Epub 2016 Feb 25.

Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-016-2471-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4766638PMC
February 2016

MALDI-Mass Spectrometric Imaging Revealing Hypoxia-Driven Lipids and Proteins in a Breast Tumor Model.

Anal Chem 2015 Jun 4;87(12):5947-5956. Epub 2015 Jun 4.

Division of Cancer Imaging Research, Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, United States.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/ac504503x
Publisher Site
http://dx.doi.org/10.1021/ac504503xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4820759PMC
June 2015

Proteomics informed by transcriptomics identifies novel secreted proteins in Dermacentor andersoni saliva.

Int J Parasitol 2014 Nov 7;44(13):1029-37. Epub 2014 Aug 7.

Paul G. Allen School for Global Animal Health, Washington State University, Pullman, WA, USA; Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, USA. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S00207519140017
Publisher Site
http://dx.doi.org/10.1016/j.ijpara.2014.07.003DOI Listing
November 2014

Automated genome mining of ribosomal peptide natural products.

ACS Chem Biol 2014 Jul 23;9(7):1545-51. Epub 2014 May 23.

Department of Electrical and Computer Engineering, University of California San Diego , La Jolla, California 92093, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/cb500199hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4215869PMC
July 2014

Automated data extraction from in situ protein-stable isotope probing studies.

J Proteome Res 2014 Mar 21;13(3):1200-10. Epub 2014 Feb 21.

Pacific Northwest National Laboratory , Richland, Washington 99354, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr400633jDOI Listing
March 2014

Basophile: accurate fragment charge state prediction improves peptide identification rates.

Genomics Proteomics Bioinformatics 2013 Apr 8;11(2):86-95. Epub 2013 Mar 8.

Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gpb.2012.11.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737598PMC
April 2013

Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes.

BMC Genomics 2011 Dec 20;12:625. Epub 2011 Dec 20.

Cancer Virology Program, University of Pittsburgh Cancer Institute Hillman Cancer Research Pavilion 5117 Centre Ave,, Pittsburgh, PA 15213 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-12-625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3282826PMC
December 2011

Proteomics-based compositional analysis of complex cellulase-hemicellulase mixtures.

J Proteome Res 2011 Oct 1;10(10):4365-72. Epub 2011 Jul 1.

Biomass Conversion Research Laboratory, Chemical Engineering and Materials Science, Michigan State University , 3815 Technology Boulevard, Suite 1045, Lansing, Michigan 48910, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr101234zDOI Listing
October 2011

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.

J Proteome Res 2011 Sep 15;10(9):3929-43. Epub 2011 Aug 15.

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/abs/10.1021/pr200052c
Publisher Site
http://dx.doi.org/10.1021/pr200052cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166380PMC
September 2011

Discovering mercury protein modifications in whole proteomes using natural isotope distributions observed in liquid chromatography-tandem mass spectrometry.

Mol Cell Proteomics 2011 Aug 30;10(8):M110.004853. Epub 2011 Apr 30.

Department of Pharmaceutical Chemistry, University of California San Francisco, UCSF MC 2280, San Francisco, CA 94158-2517, USA.

View Article

Download full-text PDF

Source
http://www.mcponline.org/lookup/doi/10.1074/mcp.M110.004853
Publisher Site
http://dx.doi.org/10.1074/mcp.M110.004853DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3149085PMC
August 2011

Blood peptidome-degradome profile of breast cancer.

PLoS One 2010 Oct 18;5(10):e13133. Epub 2010 Oct 18.

Biological Science Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0013133PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956627PMC
October 2010

Identification of disulfide bonds in protein proteolytic degradation products using de novo-protein unique sequence tags approach.

J Proteome Res 2010 Aug;9(8):4053-60

Biological Sciences Division, and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99354, USA.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/abs/10.1021/pr1002559
Publisher Site
http://dx.doi.org/10.1021/pr1002559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3217045PMC
August 2010

Establishing the proteome of normal human cerebrospinal fluid.

PLoS One 2010 Jun 11;5(6):e10980. Epub 2010 Jun 11.

Department of Medicine, University of Medicine and Dentistry of New Jersey-New Jersey Medical School, Newark, New Jersey, USA.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0010980PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881861PMC
June 2010

Strategy for degradomic-peptidomic analysis of human blood plasma.

J Proteome Res 2010 May;9(5):2339-46

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr901083mDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2866148PMC
May 2010

DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.

Mol Cell Proteomics 2010 Mar 17;9(3):486-96. Epub 2009 Dec 17.

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M900217-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849711PMC
March 2010

Improved methods for the enrichment and analysis of glycated peptides.

Anal Chem 2008 Dec;80(24):9822-9

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac801704jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752342PMC
December 2008

Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments.

Anal Chem 2008 Nov 15;80(22):8514-25. Epub 2008 Oct 15.

Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac801376gDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2692492PMC
November 2008

De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins.

Anal Chem 2008 Oct 11;80(20):7742-54. Epub 2008 Sep 11.

Biological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac801123pDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752206PMC
October 2008

Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins.

Anal Chem 2008 Aug 26;80(15):5819-28. Epub 2008 Jun 26.

Biological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac800077wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716136PMC
August 2008

The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage.

J Proteome Res 2008 Jun 16;7(6):2215-21. Epub 2008 Apr 16.

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr700575mDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2517255PMC
June 2008

Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.

J Proteome Res 2008 Jun 19;7(6):2195-203. Epub 2008 Apr 19.

Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr070510tDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556358PMC
June 2008

Human Proteinpedia enables sharing of human protein data.

Authors:
Suresh Mathivanan Mukhtar Ahmed Natalie G Ahn Hainard Alexandre Ramars Amanchy Philip C Andrews Joel S Bader Brian M Balgley Marcus Bantscheff Keiryn L Bennett Erik Björling Blagoy Blagoev Ron Bose Samir K Brahmachari Alma S Burlingame Xosé R Bustelo Gerard Cagney Greg T Cantin Helene L Cardasis Julio E Celis Raghothama Chaerkady Feixia Chu Philip A Cole Catherine E Costello Robert J Cotter David Crockett James P DeLany Angelo M De Marzo Leroi V DeSouza Eric W Deutsch Eric Dransfield Gerard Drewes Arnaud Droit Michael J Dunn Kojo Elenitoba-Johnson Rob M Ewing Jennifer Van Eyk Vitor Faca Jayson Falkner Xiangming Fang Catherine Fenselau Daniel Figeys Pierre Gagné Cecilia Gelfi Kris Gevaert Jeffrey M Gimble Florian Gnad Renu Goel Pavel Gromov Samir M Hanash William S Hancock H C Harsha Gerald Hart Faith Hays Fuchu He Prashantha Hebbar Kenny Helsens Heiko Hermeking Winston Hide Karin Hjernø Denis F Hochstrasser Oliver Hofmann David M Horn Ralph H Hruban Nieves Ibarrola Peter James Ole N Jensen Pia Hønnerup Jensen Peter Jung Kumaran Kandasamy Indu Kheterpal Reiko F Kikuno Ulrike Korf Roman Körner Bernhard Kuster Min-Seok Kwon Hyoung-Joo Lee Young-Jin Lee Michael Lefevre Minna Lehvaslaiho Pierre Lescuyer Fredrik Levander Megan S Lim Christian Löbke Joseph A Loo Matthias Mann Lennart Martens Juan Martinez-Heredia Mark McComb James McRedmond Alexander Mehrle Rajasree Menon Christine A Miller Harald Mischak S Sujatha Mohan Riaz Mohmood Henrik Molina Michael F Moran James D Morgan Robert Moritz Martine Morzel David C Muddiman Anuradha Nalli J Daniel Navarro Thomas A Neubert Osamu Ohara Rafael Oliva Gilbert S Omenn Masaaki Oyama Young-Ki Paik Kyla Pennington Rainer Pepperkok Balamurugan Periaswamy Emanuel F Petricoin Guy G Poirier T S Keshava Prasad Samuel O Purvine B Abdul Rahiman Prasanna Ramachandran Y L Ramachandra Robert H Rice Jens Rick Ragna H Ronnholm Johanna Salonen Jean-Charles Sanchez Thierry Sayd Beerelli Seshi Kripa Shankari Shi Jun Sheng Vivekananda Shetty K Shivakumar Richard J Simpson Ravi Sirdeshmukh K W Michael Siu Jeffrey C Smith Richard D Smith David J States Sumio Sugano Matthew Sullivan Giulio Superti-Furga Maarit Takatalo Visith Thongboonkerd Jonathan C Trinidad Mathias Uhlen Joël Vandekerckhove Julian Vasilescu Timothy D Veenstra José-Manuel Vidal-Taboada Mauno Vihinen Robin Wait Xiaoyue Wang Stefan Wiemann Billy Wu Tao Xu John R Yates Jun Zhong Ming Zhou Yunping Zhu Petra Zurbig Akhilesh Pandey

Nat Biotechnol 2008 Feb;26(2):164-7

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt0208-164DOI Listing
February 2008

Proteogenomics: needs and roles to be filled by proteomics in genome annotation.

Brief Funct Genomic Proteomic 2008 Jan 10;7(1):50-62. Epub 2008 Mar 10.

Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999/K8-98, Richland, WA 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bfgp/eln010DOI Listing
January 2008

A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples.

J Proteome Res 2007 Jun 12;6(6):2257-68. Epub 2007 May 12.

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr0606934DOI Listing
June 2007

Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry.

Mol Cell Proteomics 2006 Nov 19;5(11):2167-74. Epub 2006 Jul 19.

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.T600039-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1850944PMC
November 2006

High dynamic range characterization of the trauma patient plasma proteome.

Mol Cell Proteomics 2006 Oct 9;5(10):1899-913. Epub 2006 May 9.

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99354, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M600068-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1783978PMC
October 2006

Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions.

Mol Cell Proteomics 2006 Aug 8;5(8):1450-61. Epub 2006 May 8.

Biological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M600139-MCP200DOI Listing
August 2006

Spectral quality assessment for high-throughput tandem mass spectrometry proteomics.

OMICS 2004 ;8(3):255-65

BIATECH, Bothell, Washington 98011, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/omi.2004.8.255DOI Listing
March 2005

Standard mixtures for proteome studies.

OMICS 2004 ;8(1):79-92

BIATECH, Bothell, Washington 98011, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/153623104773547507DOI Listing
November 2004

Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation.

J Am Soc Mass Spectrom 2003 Jul;14(7):742-51

Department of Pediatrics, Division of Infectious Diseases, University of Washington, Seattle, Washington 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/S1044-0305(03)00133-8DOI Listing
July 2003

Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer.

Proteomics 2003 Jun;3(6):847-50

The Institute for Systems Biology, Seattle, WA 98105, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.200300362DOI Listing
June 2003