Sam John

Sam John

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Sam John

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The future potential of the Stentrode.

Expert Rev Med Devices 2019 Oct 9;16(10):841-843. Epub 2019 Oct 9.

Department of Neurosurgery, Osaka University Medical School , Osaka , Japan.

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http://dx.doi.org/10.1080/17434440.2019.1674139DOI Listing
October 2019

Author Correction: Signal quality of simultaneously recorded endovascular, subdural and epidural signals are comparable.

Sci Rep 2018 Nov 27;8(1):17469. Epub 2018 Nov 27.

Vascular Bionics Laboratory, Department of Medicine, Royal Melbourne Hospital, (RMH), The University of Melbourne, Parkville, Australia.

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http://dx.doi.org/10.1038/s41598-018-36257-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255776PMC
November 2018

Optimized partial-coverage functional analysis pipeline (OPFAP): a semi-automated pipeline for skull stripping and co-registration of partial-coverage, ultra-high-field functional images.

MAGMA 2018 Oct 29;31(5):621-632. Epub 2018 May 29.

Department of Medicine and Radiology, Melbourne Medical School, The University of Melbourne, Kenneth Myer Building, 30 Royal Parade, Parkville, VIC, 3052, Australia.

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http://link.springer.com/10.1007/s10334-018-0690-z
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http://dx.doi.org/10.1007/s10334-018-0690-zDOI Listing
October 2018

Spatially dynamic recurrent information flow across long-range dorsal motor network encodes selective motor goals.

Hum Brain Mapp 2018 06 8;39(6):2635-2650. Epub 2018 Mar 8.

Department of Electrical and Computer Systems Engineering, Monash University, Victoria, Australia.

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http://dx.doi.org/10.1002/hbm.24029DOI Listing
June 2018

Signal quality of simultaneously recorded endovascular, subdural and epidural signals are comparable.

Sci Rep 2018 05 30;8(1):8427. Epub 2018 May 30.

Vascular Bionics Laboratory, Department of Medicine, Royal Melbourne Hospital, (RMH), The University of Melbourne, Parkville, Australia.

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http://dx.doi.org/10.1038/s41598-018-26457-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5976775PMC
May 2018

7T-fMRI: Faster temporal resolution yields optimal BOLD sensitivity for functional network imaging specifically at high spatial resolution.

Neuroimage 2018 01 8;164:214-229. Epub 2017 Mar 8.

Melbourne Brain Centre Imaging Unit, Department of Anatomy and Neuroscience, The University of Melbourne, Kenneth Myer Building 30 Royal Parade, Parkville, Victoria, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2017.03.002DOI Listing
January 2018

The ovine motor cortex: A review of functional mapping and cytoarchitecture.

Neurosci Biobehav Rev 2017 Sep 19;80:306-315. Epub 2017 Jun 19.

Vascular Bionics Laboratory, Department of Medicine, The Royal Melbourne Hospital, The University of Melbourne, Melbourne, Australia; Florey Institute of Neuroscience and Mental Health, University of Melbourne, Australia.

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https://linkinghub.elsevier.com/retrieve/pii/S01497634173007
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http://dx.doi.org/10.1016/j.neubiorev.2017.06.002DOI Listing
September 2017

Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters.

Epigenetics Chromatin 2017 08 7;10(1):39. Epub 2017 Aug 7.

LMU Biocenter, Department Biology II, Ludwig Maximilians-Universität (LMU Munich), Grosshadernerstr. 2, 82152, Martinsried, Germany.

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http://dx.doi.org/10.1186/s13072-017-0146-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5547466PMC
August 2017

Chronic impedance spectroscopy of an endovascular stent-electrode array.

J Neural Eng 2016 08 5;13(4):046020. Epub 2016 Jul 5.

Vascular Bionics Laboratory, Department of Medicine, Royal Melbourne Hospital, The University of Melbourne, Victoria, 3010, Australia. The Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Victoria, 3010, Australia. The Department of Electrical and Electronic Engineering, The University of Melbourne, Victoria, 3052, Australia.

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http://dx.doi.org/10.1088/1741-2560/13/4/046020DOI Listing
August 2016

The evolution of endovascular electroencephalography: historical perspective and future applications.

Neurosurg Focus 2016 May;40(5):E7

Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, New York; and.

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http://dx.doi.org/10.3171/2016.3.FOCUS15635DOI Listing
May 2016

Role of DNA Methylation in Modulating Transcription Factor Occupancy.

Cell Rep 2015 Aug 6;12(7):1184-95. Epub 2015 Aug 6.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Division of Oncology, Department of Medicine, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.07.024DOI Listing
August 2015

Tumor promoting role of the DNA damage response.

Cell Cycle 2014 ;13(18):2807-8

a Laboratory of Genome Integrity; National Cancer Institute; National Institutes of Health ; Bethesda , MD USA.

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http://dx.doi.org/10.4161/15384101.2014.959855DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615049PMC
May 2015

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.

Nat Methods 2014 Jan 3;11(1):66-72. Epub 2013 Nov 3.

1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Department of Medicine, Division of Oncology, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/nmeth.2713DOI Listing
January 2014

Minireview: Conversing with chromatin: the language of nuclear receptors.

Mol Endocrinol 2014 Jan 1;28(1):3-15. Epub 2013 Jan 1.

Addenbrooke's Hospital (S.C.B.), Cambridge University Hospitals National Health Service Foundation Trust, Hills Road, Cambridge CB2 0QQ, United Kingdom; and National Institutes of Health (S.J.), National Cancer Institute, Laboratory for Genome Integrity, Bethesda, Maryland 20892.

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http://press.endocrine.org/doi/10.1210/mend.2014.28.issue-11
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http://dx.doi.org/10.1210/mend.2014.28.issue-11.tocDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874455PMC
January 2014

Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions.

Nat Struct Mol Biol 2014 Jan 8;21(1):73-81. Epub 2013 Dec 8.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/nsmb.2718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3947387PMC
January 2014

Suprachoroidal electrical stimulation: effects of stimulus pulse parameters on visual cortical responses.

J Neural Eng 2013 Oct 8;10(5):056011. Epub 2013 Aug 8.

Bionics Institute, VIC-3002, Australia. Department of Electronic Engineering, La Trobe University, VIC-3086, Australia.

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http://dx.doi.org/10.1088/1741-2560/10/5/056011DOI Listing
October 2013

Reprogramming the chromatin landscape: interplay of the estrogen and glucocorticoid receptors at the genomic level.

Cancer Res 2013 Aug 26;73(16):5130-9. Epub 2013 Jun 26.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-13-0742DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3799864PMC
August 2013

Genome-scale mapping of DNase I hypersensitivity.

Curr Protoc Mol Biol 2013 Jul;Chapter 27:Unit 21.27

Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1002/0471142727.mb2127s103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405172PMC
July 2013

C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements.

EMBO J 2013 May 10;32(11):1568-83. Epub 2013 May 10.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1038/emboj.2013.106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3671252PMC
May 2013

Analysis of the peroxisome proliferator-activated receptor-β/δ (PPARβ/δ) cistrome reveals novel co-regulatory role of ATF4.

BMC Genomics 2012 Nov 24;13:665. Epub 2012 Nov 24.

Department of Veterinary and Biomedical Sciences and The Center for Molecular Toxicology and Carcinogenesis, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/1471-2164-13-665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3556323PMC
November 2012

The tumour suppressor and chromatin-remodelling factor BRG1 antagonizes Myc activity and promotes cell differentiation in human cancer.

EMBO Mol Med 2012 Jul 11;4(7):603-16. Epub 2012 Apr 11.

Genes and Cancer Group, Cancer Epigenetics and Biology Program-PEBC, Bellvitge Biomedical Research Institute-IDIBELL, Hospitalet de Llobregat, Barcelona, Spain.

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http://dx.doi.org/10.1002/emmm.201200236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3407948PMC
July 2012

Rapid genome-scale mapping of chromatin accessibility in tissue.

Epigenetics Chromatin 2012 Jun 26;5(1):10. Epub 2012 Jun 26.

Gene Regulation Section Laboratory of Pathology, National Cancer Institute, NIH, Building 10, Room 2 N106, Bethesda, MD, 20892, USA.

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http://dx.doi.org/10.1186/1756-8935-5-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464876PMC
June 2012

Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism.

Cell 2011 Aug 11;146(4):544-54. Epub 2011 Aug 11.

Laboratory of Receptor Biology and Gene Expression, Building 41, B602, 41 Library Drive, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00928674110076
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http://dx.doi.org/10.1016/j.cell.2011.07.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210475PMC
August 2011

Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding.

Mol Cell 2011 Jul;43(1):145-55

Laboratory of Receptor Biology and Gene Expression, B602, Building 41, 41 Library Drive, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.molcel.2011.06.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3138120PMC
July 2011

An automated system for rapid evaluation of high-density electrode arrays in neural prostheses.

J Neural Eng 2011 Jun 15;8(3):036011. Epub 2011 Apr 15.

The Bionic Ear Institute, Daly Wing, St Vincent's Hospital, VIC-3065, Australia.

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http://dx.doi.org/10.1088/1741-2560/8/3/036011DOI Listing
June 2011

Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements.

Genome Res 2011 May 6;21(5):697-706. Epub 2011 Apr 6.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892-5055, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.111153.110
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http://dx.doi.org/10.1101/gr.111153.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3083086PMC
May 2011

Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis.

EMBO J 2011 Apr 22;30(8):1459-72. Epub 2011 Mar 22.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1038/emboj.2011.65DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102274PMC
April 2011

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

Nat Genet 2011 Mar 23;43(3):264-8. Epub 2011 Jan 23.

Laboratory of Receptor Biology and Gene Expression, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/ng.759DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6386452PMC
March 2011

Genome-wide mechanisms of nuclear receptor action.

Trends Endocrinol Metab 2010 Jan 30;21(1):3-9. Epub 2009 Sep 30.

Laboratory of Receptor Biology and Gene Expression, Building 41, Room B602, 41 Library Dr., National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1016/j.tem.2009.08.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818176PMC
January 2010

Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription.

Nat Cell Biol 2009 Sep 16;11(9):1093-102. Epub 2009 Aug 16.

Laboratory of Receptor Biology and Gene Expression, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1038/ncb1922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711162PMC
September 2009

Kinetic complexity of the global response to glucocorticoid receptor action.

Endocrinology 2009 Apr 8;150(4):1766-74. Epub 2009 Jan 8.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892-5055, USA.

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http://dx.doi.org/10.1210/en.2008-0863DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2659280PMC
April 2009

Glucocorticoid receptor activation of the Ciz1-Lcn2 locus by long range interactions.

J Biol Chem 2009 Mar 5;284(10):6048-52. Epub 2009 Jan 5.

Laboratory of Receptor Biology and Gene Expression, NCI, National Institutes of Health, Bethesda, Maryland 20892-5055, USA.

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http://dx.doi.org/10.1074/jbc.C800212200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2649095PMC
March 2009

Combinatorial probabilistic chromatin interactions produce transcriptional heterogeneity.

J Cell Sci 2009 Feb 6;122(Pt 3):345-56. Epub 2009 Jan 6.

Laboratory of Receptor Biology and Gene Expression, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1242/jcs.035865DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2724732PMC
February 2009

Chromatin remodeling complexes interact dynamically with a glucocorticoid receptor-regulated promoter.

Mol Biol Cell 2008 Aug 28;19(8):3308-22. Epub 2008 May 28.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1091/mbc.e08-02-0123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2488306PMC
August 2008

Modulation of RNA polymerase assembly dynamics in transcriptional regulation.

Mol Cell 2008 May;30(4):486-97

National Cancer Institute, Laboratory of Receptor Biology and Gene Expression, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.molcel.2008.04.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2441649PMC
May 2008

Interaction of the glucocorticoid receptor with the chromatin landscape.

Mol Cell 2008 Mar;29(5):611-24

Laboratory of Receptor Biology and Gene Expression, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1016/j.molcel.2008.02.010DOI Listing
March 2008

Actin-dependent intranuclear repositioning of an active gene locus in vivo.

J Cell Biol 2007 Dec 10;179(6):1095-103. Epub 2007 Dec 10.

Department of Cell Biology, Rosalind Franklin University of Medicine and Science, North Chicago, IL 60064, USA.

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http://dx.doi.org/10.1083/jcb.200710058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2140015PMC
December 2007

Organization of chromatin and histone modifications at a transcription site.

J Cell Biol 2007 Jun;177(6):957-67

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1083/jcb.200703157DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2064357PMC
June 2007

Single-cell analysis of glucocorticoid receptor action reveals that stochastic post-chromatin association mechanisms regulate ligand-specific transcription.

Mol Endocrinol 2006 Nov 27;20(11):2641-55. Epub 2006 Jul 27.

Laboratory of Receptor Biology and Gene Expression, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892-5055, USA.

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http://dx.doi.org/10.1210/me.2006-0091DOI Listing
November 2006

HDAC1 acetylation is linked to progressive modulation of steroid receptor-induced gene transcription.

Mol Cell 2006 Jun;22(5):669-79

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Building 41, B602, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1016/j.molcel.2006.04.019DOI Listing
June 2006

Chromatin dynamics and the evolution of alternate promoter states.

Chromosome Res 2006 ;14(1):107-16

Laboratory of Receptor Biology and Gene Expression, Center for Cancer Research, National Cancer Institute, NIH, Building 41, Room B602, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1007/s10577-006-1030-0DOI Listing
May 2006

Subnuclear trafficking and gene targeting by steroid receptors.

Ann N Y Acad Sci 2004 Jun;1024:213-20

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1196/annals.1321.002DOI Listing
June 2004

Dynamics of nuclear receptor movement and transcription.

Biochim Biophys Acta 2004 Mar;1677(1-3):46-51

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, Building 41, Room B602, 41 Library Dr MSC 5055, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1016/j.bbaexp.2003.09.016DOI Listing
March 2004

Inhibition of human papilloma virus E2 DNA binding protein by covalently linked polyamides.

Nucleic Acids Res 2003 Feb;31(4):1282-91

Laboratory of Receptor Biology and Gene Expression, Center for Cancer Research, Building 41, Room B307, NCI, NIH, Bethesda, MD 20892-5055, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC150225PMC
http://dx.doi.org/10.1093/nar/gkg206DOI Listing
February 2003

Dynamic behavior of transcription factors on a natural promoter in living cells.

EMBO Rep 2002 Dec 21;3(12):1188-94. Epub 2002 Nov 21.

Laboratory of Receptor Biology and Gene Expression, Building 41 Room B602, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-5055, USA.

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http://dx.doi.org/10.1093/embo-reports/kvf244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1308318PMC
December 2002

Gal80 confers specificity on HAT complex interactions with activators.

J Biol Chem 2002 Jul 1;277(27):24648-52. Epub 2002 May 1.

Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1074/jbc.M201965200DOI Listing
July 2002