Sach Mukherjee

Sach Mukherjee

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Sach Mukherjee

Sach Mukherjee

Publications by authors named "Sach Mukherjee"

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26Publications

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Statistical Network Inference for Time-Varying Molecular Data with Dynamic Bayesian Networks.

Methods Mol Biol 2019 ;1883:25-48

German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.

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http://dx.doi.org/10.1007/978-1-4939-8882-2_2DOI Listing
June 2019

The joint lasso: high-dimensional regression for group structured data.

Biostatistics 2018 Sep 5. Epub 2018 Sep 5.

Statistics and Machine Learning, German Center for Neurodegenerative Diseases (DZNE), Sigmund-Freud-Straße 27, Bonn, Germany.

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https://academic.oup.com/biostatistics/advance-article/doi/1
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http://dx.doi.org/10.1093/biostatistics/kxy035DOI Listing
September 2018

A Gibbs Sampler for Learning DAGs.

J Mach Learn Res 2016 Apr;17(30):1-39

German Centre for Neurodegenerative Diseases (DZNE) Bonn 53175, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5358773PMC
April 2016

Multivariate gene-set testing based on graphical models.

Biostatistics 2015 Jan 27;16(1):47-59. Epub 2014 Jun 27.

The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, Netherlands.

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http://dx.doi.org/10.1093/biostatistics/kxu027DOI Listing
January 2015

Single-cell states in the estrogen response of breast cancer cell lines.

PLoS One 2014 25;9(2):e88485. Epub 2014 Feb 25.

Department of Physics, University of Naples Federico II, CNR-Spin, Istituto Nazionale di Fisica Nucleare (INFN), Napoli, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088485PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3934861PMC
December 2014

Causal network inference using biochemical kinetics.

Bioinformatics 2014 Sep;30(17):i468-74

Department of Statistics, University of Warwick, Coventry, CV4 7AL, MRC Biostatistics Unit, Cambridge, CB2 0SR, UK, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94710, Department of Biomedical Engineering, Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97239-3098, USA and School of Clinical Medicine, University of Cambridge, Cambridge, CB2 0SP, UK Department of Statistics, University of Warwick, Coventry, CV4 7AL, MRC Biostatistics Unit, Cambridge, CB2 0SR, UK, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94710, Department of Biomedical Engineering, Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97239-3098, USA and School of Clinical Medicine, University of Cambridge, Cambridge, CB2 0SP, UK.

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http://dx.doi.org/10.1093/bioinformatics/btu452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147905PMC
September 2014

A stochastic model dissects cell states in biological transition processes.

Sci Rep 2014 Jan 17;4:3692. Epub 2014 Jan 17.

Division of Biochemistry, The Netherlands Cancer Institute, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1038/srep03692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894565PMC
January 2014

Bayesian inference of signaling network topology in a cancer cell line.

Bioinformatics 2012 Nov 24;28(21):2804-10. Epub 2012 Aug 24.

Department of Biochemistry, The Netherlands Cancer Institute, 1066 CX, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1093/bioinformatics/bts514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3476330PMC
November 2012

Network inference using steady-state data and Goldbeter-Koshland kinetics. [corrected].

Bioinformatics 2012 Sep 19;28(18):2342-8. Epub 2012 Jul 19.

Centre for Complexity Science, University of Warwick, CV4 7AL, Coventry, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts459DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436851PMC
September 2012

Network clustering: probing biological heterogeneity by sparse graphical models.

Bioinformatics 2011 Apr 10;27(7):994-1000. Epub 2011 Feb 10.

Department of Statistics, University of Warwick, Coventry, UK.

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http://dx.doi.org/10.1093/bioinformatics/btr070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065697PMC
April 2011

Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana.

Bioinformatics 2010 Feb 8;26(3):355-62. Epub 2009 Dec 8.

Warwick Systems Biology Centre, Warwick University, CV4 7AL, UK.

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http://dx.doi.org/10.1093/bioinformatics/btp673DOI Listing
February 2010

Sparse combinatorial inference with an application in cancer biology.

Bioinformatics 2009 Jan 27;25(2):265-71. Epub 2008 Nov 27.

Department of Statistics, University of Warwick, Coventry, UK.

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http://dx.doi.org/10.1093/bioinformatics/btn611DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639004PMC
January 2009

Network inference using informative priors.

Proc Natl Acad Sci U S A 2008 Sep 17;105(38):14313-8. Epub 2008 Sep 17.

Department of Statistics and Centre for Complexity Science, University of Warwick, Coventry CV4 7AL, United Kingdom.

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http://dx.doi.org/10.1073/pnas.0802272105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2567188PMC
September 2008

A theoretical analysis of gene selection.

Proc IEEE Comput Syst Bioinform Conf 2004 :131-41

Department of Engineering Science, University of Oxford, UK.

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July 2006

Next station in microarray data analysis: GEPAS.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W486-91

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Autopista del Saler 16, E46013, Valencia, Spain.

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http://dx.doi.org/10.1093/nar/gkl197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538867PMC
July 2006

Data-adaptive test statistics for microarray data.

Bioinformatics 2005 Sep;21 Suppl 2:ii108-14

Department of Engineering Science, University of Oxford, UK.

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http://dx.doi.org/10.1093/bioinformatics/bti1119DOI Listing
September 2005

A theoretical analysis of the selection of differentially expressed genes.

J Bioinform Comput Biol 2005 Jun;3(3):627-43

Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, United Kingdom.

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June 2005