Ryan P Abo

Ryan P Abo

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Ryan P Abo

Ryan P Abo

Publications by authors named "Ryan P Abo"

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19Publications

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BreaKmer: detection of structural variation in targeted massively parallel sequencing data using kmers.

Nucleic Acids Res 2015 Feb 26;43(3):e19. Epub 2014 Nov 26.

Center for Cancer Genome Discovery and Department of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA Department of Pathology, Brigham and Women's Hospital, Boston, MA 02215, USA

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http://dx.doi.org/10.1093/nar/gku1211DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330340PMC
February 2015

Multiplexed DNA repair assays for multiple lesions and multiple doses via transcription inhibition and transcriptional mutagenesis.

Proc Natl Acad Sci U S A 2014 May 22;111(18):E1823-32. Epub 2014 Apr 22.

Department of Biological Engineering, Center for Environmental Health Sciences, Department of Biology, and The David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139.

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http://dx.doi.org/10.1073/pnas.1401182111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4020053PMC
May 2014

Global analysis of cell cycle gene expression of the legume symbiont Sinorhizobium meliloti.

Proc Natl Acad Sci U S A 2014 Mar 5;111(9):3217-24. Epub 2014 Feb 5.

Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.

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http://dx.doi.org/10.1073/pnas.1400421111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3948222PMC
March 2014

Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.

BMC Genomics 2014 Feb 1;15:93. Epub 2014 Feb 1.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1186/1471-2164-15-93DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3930546PMC
February 2014

Shared genomic segment analysis: the power to find rare disease variants.

Ann Hum Genet 2012 Nov 19;76(6):500-9. Epub 2012 Sep 19.

Division of Genetic Epidemiology, University of Utah School of Medicine, Salt Lake City, UT 84108, USA.

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http://dx.doi.org/10.1111/j.1469-1809.2012.00728.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879794PMC
November 2012

Serine hydroxymethyltransferase 1 and 2: gene sequence variation and functional genomic characterization.

J Neurochem 2012 Mar 6;120(6):881-90. Epub 2012 Feb 6.

Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1111/j.1471-4159.2012.07646.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3296836PMC
March 2012

Genetic variation predicting cisplatin cytotoxicity associated with overall survival in lung cancer patients receiving platinum-based chemotherapy.

Clin Cancer Res 2011 Sep 20;17(17):5801-11. Epub 2011 Jul 20.

Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic College of Medicine, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-11-1133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3167019PMC
September 2011

Pedigree association: assigning individual weights to pedigree members for genetic association analysis.

BMC Proc 2009 Dec 15;3 Suppl 7:S121. Epub 2009 Dec 15.

Biomedical Informatics Department, University of Utah, 26 South 2000 East Room 5775 HSEB, Salt Lake City, Utah 84112, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795894PMC
http://dx.doi.org/10.1186/1753-6561-3-s7-s121DOI Listing
December 2009

Evaluation of genetic risk scores for lipid levels using genome-wide markers in the Framingham Heart Study.

BMC Proc 2009 Dec 15;3 Suppl 7:S46. Epub 2009 Dec 15.

Department of Biomedical Informatics, School of Medicine, University of Utah, 26 South 2000 East, Salt Lake City, Utah 84112, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795945PMC
http://dx.doi.org/10.1186/1753-6561-3-s7-s46DOI Listing
December 2009