Dr Ruth C Lovering, PhD - University College London - Principal Research Associate

Dr Ruth C Lovering

PhD

University College London

Principal Research Associate

United Kingdom

Dr Ruth C Lovering, PhD - University College London - Principal Research Associate

Dr Ruth C Lovering

PhD

Introduction

Primary Affiliation: University College London - United Kingdom

Publications

29Publications

1105Reads

-Profile Views

1472PubMed Central Citations

Annotation Extensions.

Methods Mol Biol 2017 ;1446:233-243

Functional Gene Annotation Initiative, Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, 5 University Street, London, WC1E 6JF, UK.

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http://dx.doi.org/10.1007/978-1-4939-3743-1_17DOI Listing
December 2017
23 Reads

How Does the Scientific Community Contribute to Gene Ontology?

Authors:
Ruth C Lovering

Methods Mol Biol 2017 ;1446:85-93

Functional Gene Annotation Initiative, Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, 5 University Street, London, WC1E 6JF, UK.

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http://dx.doi.org/10.1007/978-1-4939-3743-1_7DOI Listing
December 2017
26 Reads

Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis.

Mol Cell Proteomics 2017 02 22;16(2):168-180. Epub 2016 Dec 22.

From the ‡Centre for Cardiovascular Biology and Medicine, Division of Medicine The Rayne Building, University College London, London WC1E 6JJ, United Kingdom;

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http://dx.doi.org/10.1074/mcp.M116.064428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5294206PMC
February 2017
98 Reads
1 Citation
6.564 Impact Factor

Weighted Protein Interaction Network Analysis of Frontotemporal Dementia.

J Proteome Res 2017 02 12;16(2):999-1013. Epub 2017 Jan 12.

Department of Molecular Neuroscience, UCL Institute of Neurology , Russell Square House, 9-12 Russell Square House, London WC1B 5EH, United Kingdom.

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http://dx.doi.org/10.1021/acs.jproteome.6b00934DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6152613PMC
February 2017
21 Reads
6 Citations
4.250 Impact Factor

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Authors:
Yuxiang Jiang Tal Ronnen Oron Wyatt T Clark Asma R Bankapur Daniel D'Andrea Rosalba Lepore Christopher S Funk Indika Kahanda Karin M Verspoor Asa Ben-Hur Da Chen Emily Koo Duncan Penfold-Brown Dennis Shasha Noah Youngs Richard Bonneau Alexandra Lin Sayed M E Sahraeian Pier Luigi Martelli Giuseppe Profiti Rita Casadio Renzhi Cao Zhaolong Zhong Jianlin Cheng Adrian Altenhoff Nives Skunca Christophe Dessimoz Tunca Dogan Kai Hakala Suwisa Kaewphan Farrokh Mehryary Tapio Salakoski Filip Ginter Hai Fang Ben Smithers Matt Oates Julian Gough Petri Törönen Patrik Koskinen Liisa Holm Ching-Tai Chen Wen-Lian Hsu Kevin Bryson Domenico Cozzetto Federico Minneci David T Jones Samuel Chapman Dukka Bkc Ishita K Khan Daisuke Kihara Dan Ofer Nadav Rappoport Amos Stern Elena Cibrian-Uhalte Paul Denny Rebecca E Foulger Reija Hieta Duncan Legge Ruth C Lovering Michele Magrane Anna N Melidoni Prudence Mutowo-Meullenet Klemens Pichler Aleksandra Shypitsyna Biao Li Pooya Zakeri Sarah ElShal Léon-Charles Tranchevent Sayoni Das Natalie L Dawson David Lee Jonathan G Lees Ian Sillitoe Prajwal Bhat Tamás Nepusz Alfonso E Romero Rajkumar Sasidharan Haixuan Yang Alberto Paccanaro Jesse Gillis Adriana E Sedeño-Cortés Paul Pavlidis Shou Feng Juan M Cejuela Tatyana Goldberg Tobias Hamp Lothar Richter Asaf Salamov Toni Gabaldon Marina Marcet-Houben Fran Supek Qingtian Gong Wei Ning Yuanpeng Zhou Weidong Tian Marco Falda Paolo Fontana Enrico Lavezzo Stefano Toppo Carlo Ferrari Manuel Giollo Damiano Piovesan Silvio C E Tosatto Angela Del Pozo José M Fernández Paolo Maietta Alfonso Valencia Michael L Tress Alfredo Benso Stefano Di Carlo Gianfranco Politano Alessandro Savino Hafeez Ur Rehman Matteo Re Marco Mesiti Giorgio Valentini Joachim W Bargsten Aalt D J van Dijk Branislava Gemovic Sanja Glisic Vladmir Perovic Veljko Veljkovic Nevena Veljkovic Danillo C Almeida-E-Silva Ricardo Z N Vencio Malvika Sharan Jörg Vogel Lakesh Kansakar Shanshan Zhang Slobodan Vucetic Zheng Wang Michael J E Sternberg Mark N Wass Rachael P Huntley Maria J Martin Claire O'Donovan Peter N Robinson Yves Moreau Anna Tramontano Patricia C Babbitt Steven E Brenner Michal Linial Christine A Orengo Burkhard Rost Casey S Greene Sean D Mooney Iddo Friedberg Predrag Radivojac

Genome Biol 2016 09 7;17(1):184. Epub 2016 Sep 7.

Department of Computer Science and Informatics, Indiana University, Bloomington, IN, USA.

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http://dx.doi.org/10.1186/s13059-016-1037-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5015320PMC
September 2016
135 Reads
37 Citations

Guidelines for the functional annotation of microRNAs using the Gene Ontology.

RNA 2016 May 25;22(5):667-76. Epub 2016 Feb 25.

Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, London WC1E 6JF, United Kingdom.

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http://dx.doi.org/10.1261/rna.055301.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836642PMC
May 2016
22 Reads
7 Citations
4.940 Impact Factor

Using Gene Ontology to describe the role of the neurexin-neuroligin-SHANK complex in human, mouse and rat and its relevance to autism.

BMC Bioinformatics 2015 Jun 6;16:186. Epub 2015 Jun 6.

Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, Rayne Building, 5 University Street, London, WC1E 6JF, UK.

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http://dx.doi.org/10.1186/s12859-015-0622-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4458007PMC
June 2015
7 Reads
5 Citations
2.580 Impact Factor

Computational analysis of the LRRK2 interactome.

PeerJ 2015 19;3:e778. Epub 2015 Feb 19.

School of Pharmacy, University of Reading , Whiteknights, Reading , UK ; Department of Molecular Neuroscience, UCL Institute of Neurology, University College London , Queen Square, London , UK ; Centre for Integrated Neuroscience and Neurodynamics, University of Reading , Whiteknights, Reading , UK.

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http://dx.doi.org/10.7717/peerj.778DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338795PMC
March 2015
9 Reads
15 Citations

From zebrafish heart jogging genes to mouse and human orthologs: using Gene Ontology to investigate mammalian heart development.

F1000Res 2013 13;2:242. Epub 2013 Nov 13.

Cardiovascular GO Annotation Initiative, Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, London, WC1E 6JF, UK.

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http://dx.doi.org/10.12688/f1000research.2-242.v2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3931453PMC
March 2014
13 Reads
1 Citation

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.

Nucleic Acids Res 2014 Jan 13;42(Database issue):D358-63. Epub 2013 Nov 13.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, School of Animal and Comparative Biomedical Sciences, The University of Arizona, Tucson, AZ 85721-0036, USA, Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Rue Michel-Servet, CH-1211 Geneva 4, Switzerland, Department of Biology, University of Rome Tor Vergata, Rome 00133, Italy, Ontario Cancer Institute, the Campbell Family Institute for Cancer Research, and Techna Institute, University Health Network, Toronto, Ontario M5G 0A3, Canada, Cardiovascular Gene Annotation Initiative, Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, London WC1E 6BT, UK, Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, British Columbia V6T 1Z4 Canada, Mechanobiology Institute, National University of Singapore, T-Lab #05-01, 5A Engineering Drive 1, Singapore 117411, Singapore, Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, 7489 Trondheim, Norway, Research Institute IRCSS "Fondazione Santa Lucia", Rome 00179, Italy, Molecular Connections Pvt. Ltd., Bangalore 560 004, India, Institut de Biologie et Chimie des Protéines, Unité Mixte de Recherche 5086, Centre National de la Recherche Scientifique, Université Lyon 1, Lyon, France and Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkt1115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965093PMC
January 2014
50 Reads
305 Citations
9.112 Impact Factor

Progress in genetic association studies of plasma lipids.

Curr Opin Lipidol 2013 Apr;24(2):123-8

Division of Heart and Lungs, Department of Cardiology, University Medical Center Utrecht, Utrecht, The Netherlands.

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http://dx.doi.org/10.1097/MOL.0b013e32835df2d6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222789PMC
April 2013
43 Reads
3 Citations
5.660 Impact Factor

Transcriptomic analyses of murine resolution-phase macrophages.

Blood 2011 Dec 19;118(26):e192-208. Epub 2011 Oct 19.

Centre for Clinical Pharmacology and Therapeutics, Division of Medicine, University College London, United Kingdom.

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http://dx.doi.org/10.1182/blood-2011-04-345330DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5362087PMC
December 2011
8 Reads
71 Citations
10.452 Impact Factor

The representation of heart development in the gene ontology.

Dev Biol 2011 Jun 17;354(1):9-17. Epub 2011 Mar 17.

Cardiovascular GO Annotation Initiative, Centre for Cardiovascular Genetics, Rayne Institute, University College London, London, UK.

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http://dx.doi.org/10.1016/j.ydbio.2011.03.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302178PMC
June 2011
5 Reads
15 Citations
3.550 Impact Factor

Improvements to cardiovascular gene ontology.

Atherosclerosis 2009 Jul 1;205(1):9-14. Epub 2008 Nov 1.

Department of Medicine, University College London, Rayne Institute, London, UK.

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http://dx.doi.org/10.1016/j.atherosclerosis.2008.10.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2706316PMC
July 2009
16 Reads
3 Citations
3.994 Impact Factor

Access to immunology through the Gene Ontology.

Immunology 2008 Oct;125(2):154-60

Department of Medicine, University College London, Rayne Institute, London, UK.

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http://dx.doi.org/10.1111/j.1365-2567.2008.02940.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561138PMC
October 2008
16 Reads
9 Citations
3.800 Impact Factor

Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?

Proteomics 2008 May;8(10):1950-3

Centre for Cardiovascular Genetics, Department of Medicine, University College London, Rayne Institute, London, UK.

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http://dx.doi.org/10.1002/pmic.200800078DOI Listing
May 2008
9 Reads
9 Citations
3.810 Impact Factor

A revised nomenclature for the human and rodent alpha-tubulin gene family.

Genomics 2007 Aug 1;90(2):285-9. Epub 2007 Jun 1.

HUGO Gene Nomenclature Committee, Department of Biology, University College London, Wolfson House, 4 Stephenson Way, London NW1 2HE, UK.

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http://dx.doi.org/10.1016/j.ygeno.2007.04.008DOI Listing
August 2007
32 Reads
12 Citations
2.284 Impact Factor

An update of the S100 nomenclature.

Biochim Biophys Acta 2006 Nov 26;1763(11):1282-3. Epub 2006 Jul 26.

Pediatric Pneumology and Immunology, Charité Medical Faculty, Berlin, Germany.

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http://dx.doi.org/10.1016/j.bbamcr.2006.07.013DOI Listing
November 2006
9 Reads
25 Citations

The finished DNA sequence of human chromosome 12.

Authors:
Steven E Scherer Donna M Muzny Christian J Buhay Rui Chen Andrew Cree Yan Ding Shannon Dugan-Rocha Rachel Gill Preethi Gunaratne R Alan Harris Alicia C Hawes Judith Hernandez Anne V Hodgson Jennifer Hume Andrew Jackson Ziad Mohid Khan Christie Kovar-Smith Lora R Lewis Ryan J Lozado Michael L Metzker Aleksandar Milosavljevic George R Miner Kate T Montgomery Margaret B Morgan Lynne V Nazareth Graham Scott Erica Sodergren Xing-Zhi Song David Steffen Ruth C Lovering David A Wheeler Kim C Worley Yi Yuan Zhengdong Zhang Charles Q Adams M Ali Ansari-Lari Mulu Ayele Mary J Brown Guan Chen Zhijian Chen Kerstin P Clerc-Blankenburg Clay Davis Oliver Delgado Huyen H Dinh Heather Draper Manuel L Gonzalez-Garay Paul Havlak Laronda R Jackson Leni S Jacob Susan H Kelly Li Li Zhangwan Li Jing Liu Wen Liu Jing Lu Manjula Maheshwari Bao-Viet Nguyen Geoffrey O Okwuonu Shiran Pasternak Lesette M Perez Farah J H Plopper Jireh Santibanez Hua Shen Paul E Tabor Daniel Verduzco Lenee Waldron Qiaoyan Wang Gabrielle A Williams Jingkun Zhang Jianling Zhou Carlana C Allen Anita G Amin Vivian Anyalebechi Michael Bailey Joseph A Barbaria Kesha E Bimage Nathaniel P Bryant Paula E Burch Carrie E Burkett Kevin L Burrell Eliana Calderon Veronica Cardenas Kelvin Carter Kristal Casias Iracema Cavazos Sandra R Cavazos Heather Ceasar Joseph Chacko Sheryl N Chan Dean Chavez Constantine Christopoulos Joseph Chu Raynard Cockrell Caroline D Cox Michelle Dang Stephanie R Dathorne Robert David Candi Mon'Et Davis Latarsha Davy-Carroll Denise R Deshazo Jeremy E Donlin Lisa D'Souza Kristy A Eaves Amy Egan Alexandra J Emery-Cohen Michael Escotto Nicole Flagg Lisa D Forbes Abdul M Gabisi Melissa Garza Cerissa Hamilton Nicholas Henderson Omar Hernandez Sandra Hines Marilyn E Hogues Mei Huang DeVincent G Idlebird Rudy Johnson Angela Jolivet Sally Jones Ryan Kagan Laquisha M King Belita Leal Heather Lebow Sandra Lee Jaclyn M LeVan Lakeshia C Lewis Pamela London Lorna M Lorensuhewa Hermela Loulseged Demetria A Lovett Alice Lucier Raymond L Lucier Jie Ma Renita C Madu Patricia Mapua Ashley D Martindale Evangelina Martinez Elizabeth Massey Samantha Mawhiney Michael G Meador Sylvia Mendez Christian Mercado Iracema C Mercado Christina E Merritt Zachary L Miner Emmanuel Minja Teresa Mitchell Farida Mohabbat Khatera Mohabbat Baize Montgomery Niki Moore Sidney Morris Mala Munidasa Robin N Ngo Ngoc B Nguyen Elizabeth Nickerson Ogechi O Nwaokelemeh Stanley Nwokenkwo Melissa Obregon Maryann Oguh Njideka Oragunye Rodolfo J Oviedo Bridgette J Parish David N Parker Julia Parrish Kenya L Parks Heidie A Paul Brett A Payton Agapito Perez William Perrin Adam Pickens Eltrick L Primus Ling-Ling Pu Maria Puazo Miyo M Quiles Juana B Quiroz Dina Rabata Kacy Reeves San Juana Ruiz Hongmei Shao Ida Sisson Titilola Sonaike Richard P Sorelle Angelica E Sutton Amanda F Svatek Leah Anne Svetz Kavitha S Tamerisa Tineace R Taylor Brian Teague Nicole Thomas Rachel D Thorn Zulma Y Trejos Brenda K Trevino Ogechi N Ukegbu Jeremy B Urban Lydia I Vasquez Virginia A Vera Donna M Villasana Ling Wang Stephanie Ward-Moore James T Warren Xuehong Wei Flower White Angela L Williamson Regina Wleczyk Hailey S Wooden Steven H Wooden Jennifer Yen Lillienne Yoon Vivienne Yoon Sara E Zorrilla David Nelson Raju Kucherlapati George Weinstock Richard A Gibbs

Nature 2006 Mar;440(7082):346-51

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature04569DOI Listing
March 2006
182 Reads
15 Citations
42.351 Impact Factor

Nomenclature for the human Arf family of GTP-binding proteins: ARF, ARL, and SAR proteins.

J Cell Biol 2006 Feb;172(5):645-50

Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.1083/jcb.200512057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063696PMC
February 2006
241 Reads
73 Citations
9.834 Impact Factor

Gene map of the extended human MHC.

Nat Rev Genet 2004 Dec;5(12):889-99

Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nrg1489DOI Listing
December 2004
10 Reads
248 Citations
36.980 Impact Factor

Revised nomenclature for mammalian vacuolar-type H+ -ATPase subunit genes.

Mol Cell 2003 Oct;12(4):801-3

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http://dx.doi.org/10.1016/s1097-2765(03)00397-6DOI Listing
October 2003
11 Reads
17 Citations
14.020 Impact Factor

Guidelines for human gene nomenclature.

Genomics 2002 Apr;79(4):464-70

HUGO Gene Nomenclature Committee, The Galton Laboratory, Department of Biology, University College London, Wolfson House, 4, Stephenson Way, London, NW1 2HE, UK.

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http://dx.doi.org/10.1006/geno.2002.6748DOI Listing
April 2002
5 Reads
85 Citations
2.284 Impact Factor

Top co-authors

Varsha K Khodiyar
Varsha K Khodiyar

University College London

7
Philippa J Talmud
Philippa J Talmud

University College London

5
Rachael P Huntley
Rachael P Huntley

European Molecular Biology Laboratory

5
Lois J Maltais
Lois J Maltais

University of North Carolina

4
Doug Howe
Doug Howe

5291 University of Oregon Eugene

3
Evelyn B Camon
Evelyn B Camon

European Molecular Biology Laboratory

3
Peter Scambler
Peter Scambler

University College of London

3
Emily C Dimmer
Emily C Dimmer

EMBL-European Bioinformatics Institute

3
Sue Povey
Sue Povey

University College London

3
Yasmin Alam-Faruque
Yasmin Alam-Faruque

EMBL-European Bioinformatics Institute

2