Publications by authors named "Rustem F Ismagilov"

122Publications

Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community.

Sci Adv 2020 Aug 12;6(33):eaba0353. Epub 2020 Aug 12.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.

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August 2020

Publisher Correction: A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities.

Nat Commun 2020 07 6;11(1):3438. Epub 2020 Jul 6.

Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA, USA.

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July 2020

A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities.

Nat Commun 2020 05 22;11(1):2590. Epub 2020 May 22.

Division of Biology and Biological Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA, USA.

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May 2020

Differential DNA accessibility to polymerase enables 30-minute phenotypic β-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae.

PLoS Biol 2020 03 19;18(3):e3000652. Epub 2020 Mar 19.

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.

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March 2020

Surfactant-enhanced DNA accessibility to nuclease accelerates phenotypic β-lactam antibiotic susceptibility testing of Neisseria gonorrhoeae.

PLoS Biol 2020 03 19;18(3):e3000651. Epub 2020 Mar 19.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States of America.

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March 2020

Real-time kinetics and high-resolution melt curves in single-molecule digital LAMP to differentiate and study specific and non-specific amplification.

Nucleic Acids Res 2020 04;48(7):e42

Division of Chemistry and Chemical Engineering, California Institute of Technology 1200 E. California Boulevard, Pasadena, CA 91125, USA.

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April 2020

Self-partitioning SlipChip for slip-induced droplet formation and human papillomavirus viral load quantification with digital LAMP.

Biosens Bioelectron 2020 May 18;155:112107. Epub 2020 Feb 18.

School of Biomedical Engineering, Shanghai Jiao Tong University, 1954 Huashan Road, Shanghai, 200030, China. Electronic address:

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May 2020

Self-reinoculation with fecal flora changes microbiota density and composition leading to an altered bile-acid profile in the mouse small intestine.

Microbiome 2020 02 12;8(1):19. Epub 2020 Feb 12.

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.

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February 2020

Two-phase wash to solve the ubiquitous contaminant-carryover problem in commercial nucleic-acid extraction kits.

Sci Rep 2020 02 6;10(1):1940. Epub 2020 Feb 6.

Division of Biology and Biological Engineering, California Institute of Technology 1200 E. California Blvd., Pasadena, CA, 91125, United States.

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February 2020

Interplay of motility and polymer-driven depletion forces in the initial stages of bacterial aggregation.

Soft Matter 2019 Sep 23;15(35):7071-7079. Epub 2019 Aug 23.

Division of Chemistry & Chemical Engineering, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA. and Division of Biology & Biological Engineering, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA.

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September 2019

Microfluidic SlipChip device for multistep multiplexed biochemistry on a nanoliter scale.

Lab Chip 2019 10 23;19(19):3200-3211. Epub 2019 Aug 23.

Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, CA 91125, USA. and Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, CA 91125, USA.

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October 2019

Human-gut-microbiome on a chip.

Nat Biomed Eng 2019 07;3(7):500-501

Division of Chemistry & Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.

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July 2019

Multistep SlipChip for the Generation of Serial Dilution Nanoliter Arrays and Hepatitis B Viral Load Quantification by Digital Loop Mediated Isothermal Amplification.

Anal Chem 2019 07 23;91(14):8751-8755. Epub 2019 May 23.

School of Biomedical Engineering , Shanghai Jiao Tong University , 1954 Hua Shan Road , Shanghai 200030 , China.

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July 2019

High-molecular-weight polymers from dietary fiber drive aggregation of particulates in the murine small intestine.

Elife 2019 01 22;8. Epub 2019 Jan 22.

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, United States.

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January 2019

Real-Time, Digital LAMP with Commercial Microfluidic Chips Reveals the Interplay of Efficiency, Speed, and Background Amplification as a Function of Reaction Temperature and Time.

Anal Chem 2019 01 19;91(1):1034-1042. Epub 2018 Dec 19.

Division of Chemistry & Chemical Engineering , California Institute of Technology , 1200 East California Boulevard , Mail Code 210-41, Pasadena , California , 91125 , United States.

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January 2019

RNA markers enable phenotypic test of antibiotic susceptibility in Neisseria gonorrhoeae after 10 minutes of ciprofloxacin exposure.

Sci Rep 2018 08 2;8(1):11606. Epub 2018 Aug 2.

Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, CA, United States of America.

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August 2018

Rapid pathogen-specific phenotypic antibiotic susceptibility testing using digital LAMP quantification in clinical samples.

Sci Transl Med 2017 Oct;9(410)

Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA.

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October 2017