Publications by authors named "Russell Schwartz"

91Publications

Neural Network Deconvolution Method for Resolving Pathway-Level Progression of Tumor Clonal Expression Programs With Application to Breast Cancer Brain Metastases.

Authors:
Yifeng Tao Haoyun Lei Adrian V Lee Jian Ma Russell Schwartz

Front Physiol 2020 4;11:1055. Epub 2020 Sep 4.

Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, United States.

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September 2020

Reasons to go for Rezūm steam therapy: an effective and durable outpatient minimally invasive procedure.

Authors:
Adel Arezki Iman Sadri Félix Couture Russell Schwartz David-Dan Nguyen Ahmed S Zakaria Dean Elterman Claus Roehrborn Kevin McVary Kevin C Zorn

World J Urol 2020 Sep 23. Epub 2020 Sep 23.

Division of Urology, Centre Hospitalier de l'Université de Montréal, Montreal, QC, Canada.

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September 2020

Reasons to believe in vaporization: a review of the benefits of photo-selective and transurethral vaporization.

Authors:
Russell N Schwartz Felix Couture Iman Sadri Adel Arezki David-Dan Nguyen Ahmed S Zakaria Kyle Law Dean Elterman Malte Rieken Hannes Cash Kevin C Zorn

World J Urol 2020 Sep 15. Epub 2020 Sep 15.

Département d'Urologie, Centre Hospitalier de l'Université de Montréal, Montreal, Canada.

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September 2020

Reasons to overthrow TURP: bring on Aquablation.

Authors:
Iman Sadri Adel Arezki Félix Couture David-Dan Nguyen Russell Schwartz Ahmed S Zakaria Dean Elterman Enrique Rijo Vincent Misrai Thorsten Bach Claus G Roehrborn Kevin C Zorn

World J Urol 2020 Aug 1. Epub 2020 Aug 1.

Division of Urology, Centre Hospitalier de L'Université de Montréal, Montreal, QC, Canada.

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August 2020

Detectable Prostate-specific antigen value between 0.01 and 0.1 ng/ml following robotic-assisted radical prostatectomy (RARP): does it correlate with future biochemical recurrence?

Authors:
Ahmed S Zakaria Russell N Schwartz Amr Hodhod Félix Couture Côme Tholomier Hanna Shahine Cristina Negrean David-Dan Nguyen Marc Zanaty Franziska Stolzenbach Pierre I Karakiewicz Assaad El-Hakim Kevin C Zorn

World J Urol 2020 Jul 21. Epub 2020 Jul 21.

Division of Urology, Department of Surgery, Centre Hospitalier de l'université de Montréal (CHUM), 1000 Rue Saint-Denis, Montreal, QC, Canada.

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July 2020

Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis.

Authors:
Yifeng Tao Haoyun Lei Xuecong Fu Adrian V Lee Jian Ma Russell Schwartz

Bioinformatics 2020 Jul;36(Supplement_1):i407-i416

Department of computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

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July 2020

Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.

Authors:
Haoyun Lei Bochuan Lyu E Michael Gertz Alejandro A Schäffer Xulian Shi Kui Wu Guibo Li Liqin Xu Yong Hou Michael Dean Russell Schwartz

J Comput Biol 2020 04 16;27(4):565-598. Epub 2020 Mar 16.

Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania.

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April 2020

Machine Learning and Radiogenomics: Lessons Learned and Future Directions.

Authors:
John Kang Tiziana Rancati Sangkyu Lee Jung Hun Oh Sarah L Kerns Jacob G Scott Russell Schwartz Seyoung Kim Barry S Rosenstein

Front Oncol 2018 21;8:228. Epub 2018 Jun 21.

Department of Radiation Oncology, Icahn School of Medicine at Mount Sinai, New York, NY, United States.

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June 2018

Deconvolution and phylogeny inference of structural variations in tumor genomic samples.

Authors:
Jesse Eaton Jingyi Wang Russell Schwartz

Bioinformatics 2018 07;34(13):i357-i365

Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA.

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July 2018

A method for efficient Bayesian optimization of self-assembly systems from scattering data.

Authors:
Marcus Thomas Russell Schwartz

BMC Syst Biol 2018 06 8;12(1):65. Epub 2018 Jun 8.

Computational Biology Department, Carnegie Mellon University, 5000 Forbes Ave, Pittsburgh, USA.

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June 2018

The evolution of single cell-derived colorectal cancer cell lines is dominated by the continued selection of tumor-specific genomic imbalances, despite random chromosomal instability.

Authors:
Darawalee Wangsa Rüdiger Braun Madison Schiefer Edward Michael Gertz Daniel Bronder Isabel Quintanilla Hesed M Padilla-Nash Irianna Torres Cynthia Hunn Lidia Warner Floryne O Buishand Yue Hu Daniela Hirsch Timo Gaiser Jordi Camps Russell Schwartz Alejandro A Schäffer Kerstin Heselmeyer-Haddad Thomas Ried

Carcinogenesis 2018 07;39(8):993-1005

Genetics Branch, Center for Cancer Research, National Cancer Institute/National Institutes of Health, Bethesda, MD, USA.

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July 2018

The development and application of bioinformatics core competencies to improve bioinformatics training and education.

Authors:
Nicola Mulder Russell Schwartz Michelle D Brazas Cath Brooksbank Bruno Gaeta Sarah L Morgan Mark A Pauley Anne Rosenwald Gabriella Rustici Michael Sierk Tandy Warnow Lonnie Welch

PLoS Comput Biol 2018 02 1;14(2):e1005772. Epub 2018 Feb 1.

School of Electrical Engineering and Computer Science, Ohio University, Athens, Ohio, United States of America.

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February 2018

Aneuploidy, TP53 mutation, and amplification of MYC correlate with increased intratumor heterogeneity and poor prognosis of breast cancer patients.

Authors:
Johanna Oltmann Kerstin Heselmeyer-Haddad Leanora S Hernandez Rüdiger Meyer Irianna Torres Yue Hu Natalie Doberstein J Keith Killian David Petersen Yuelin Jack Zhu Daniel C Edelman Paul S Meltzer Russell Schwartz E Michael Gertz Alejandro A Schäffer Gert Auer Jens K Habermann Thomas Ried

Genes Chromosomes Cancer 2018 04 9;57(4):165-175. Epub 2018 Jan 9.

Genetics Branch, Center for Cancer Research, National Cancer Institute/National Institutes of Health, Bethesda, Maryland.

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April 2018

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data.

Authors:
Theodore Roman Lu Xie Russell Schwartz

PLoS Comput Biol 2017 Oct 23;13(10):e1005815. Epub 2017 Oct 23.

Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.

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October 2017

Quantitative computational models of molecular self-assembly in systems biology.

Authors:
Marcus Thomas Russell Schwartz

Phys Biol 2017 05 23;14(3):035003. Epub 2017 May 23.

Computational Biology Department, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, United States of America. Joint Carnegie Mellon University/University of Pittsburgh Ph.D. Program in Computational Biology, 4400 Fifth Avenue, Pittsburgh, PA 15213, United States of America.

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May 2017

The evolution of tumour phylogenetics: principles and practice.

Authors:
Russell Schwartz Alejandro A Schäffer

Nat Rev Genet 2017 04 13;18(4):213-229. Epub 2017 Feb 13.

Computational Biology Branch, National Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland 20892, USA.

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April 2017

FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy Probe.

Authors:
E Michael Gertz Salim Akhter Chowdhury Woei-Jyh Lee Darawalee Wangsa Kerstin Heselmeyer-Haddad Thomas Ried Russell Schwartz Alejandro A Schäffer

PLoS One 2016 30;11(6):e0158569. Epub 2016 Jun 30.

Computational Biology Branch, National Center for Biotechnology Information, U.S. National Institutes of Health, Bethesda, MD, United States of America.

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July 2017

Modeling Effects of RNA on Capsid Assembly Pathways via Coarse-Grained Stochastic Simulation.

Authors:
Gregory R Smith Lu Xie Russell Schwartz

PLoS One 2016 31;11(5):e0156547. Epub 2016 May 31.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.

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July 2017

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

Authors:
Lonnie Welch Cath Brooksbank Russell Schwartz Sarah L Morgan Bruno Gaeta Alastair M Kilpatrick Daniel Mietchen Benjamin L Moore Nicola Mulder Mark Pauley William Pearson Predrag Radivojac Naomi Rosenberg Anne Rosenwald Gabriella Rustici Tandy Warnow

PLoS Comput Biol 2016 05 13;12(5):e1004943. Epub 2016 May 13.

Departments of Computer Science and Bioengineering, University of Illinois, Urbana, Illinois, United States of America.

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May 2016

Derivative-Free Optimization of Rate Parameters of Capsid Assembly Models from Bulk in Vitro Data.

Authors:
Lu Xie Gregory R Smith Russell Schwartz

IEEE/ACM Trans Comput Biol Bioinform 2017 Jul-Aug;14(4):844-855. Epub 2016 May 5.

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March 2018