Publications by authors named "Russell Schwartz"

91Publications

Neural Network Deconvolution Method for Resolving Pathway-Level Progression of Tumor Clonal Expression Programs With Application to Breast Cancer Brain Metastases.

Front Physiol 2020 4;11:1055. Epub 2020 Sep 4.

Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, United States.

View Article and Find Full Text PDF
September 2020

Reasons to overthrow TURP: bring on Aquablation.

World J Urol 2020 Aug 1. Epub 2020 Aug 1.

Division of Urology, Centre Hospitalier de L'Université de Montréal, Montreal, QC, Canada.

View Article and Find Full Text PDF
August 2020

Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis.

Bioinformatics 2020 Jul;36(Supplement_1):i407-i416

Department of computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

View Article and Find Full Text PDF
July 2020

Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.

J Comput Biol 2020 04 16;27(4):565-598. Epub 2020 Mar 16.

Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania.

View Article and Find Full Text PDF
April 2020

Machine Learning and Radiogenomics: Lessons Learned and Future Directions.

Front Oncol 2018 21;8:228. Epub 2018 Jun 21.

Department of Radiation Oncology, Icahn School of Medicine at Mount Sinai, New York, NY, United States.

View Article and Find Full Text PDF
June 2018

Deconvolution and phylogeny inference of structural variations in tumor genomic samples.

Bioinformatics 2018 07;34(13):i357-i365

Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA.

View Article and Find Full Text PDF
July 2018

A method for efficient Bayesian optimization of self-assembly systems from scattering data.

BMC Syst Biol 2018 06 8;12(1):65. Epub 2018 Jun 8.

Computational Biology Department, Carnegie Mellon University, 5000 Forbes Ave, Pittsburgh, USA.

View Article and Find Full Text PDF
June 2018

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data.

PLoS Comput Biol 2017 Oct 23;13(10):e1005815. Epub 2017 Oct 23.

Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.

View Article and Find Full Text PDF
October 2017

Quantitative computational models of molecular self-assembly in systems biology.

Phys Biol 2017 05 23;14(3):035003. Epub 2017 May 23.

Computational Biology Department, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, United States of America. Joint Carnegie Mellon University/University of Pittsburgh Ph.D. Program in Computational Biology, 4400 Fifth Avenue, Pittsburgh, PA 15213, United States of America.

View Article and Find Full Text PDF
May 2017

The evolution of tumour phylogenetics: principles and practice.

Nat Rev Genet 2017 04 13;18(4):213-229. Epub 2017 Feb 13.

Computational Biology Branch, National Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland 20892, USA.

View Article and Find Full Text PDF
April 2017

FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy Probe.

PLoS One 2016 30;11(6):e0158569. Epub 2016 Jun 30.

Computational Biology Branch, National Center for Biotechnology Information, U.S. National Institutes of Health, Bethesda, MD, United States of America.

View Article and Find Full Text PDF
July 2017

Modeling Effects of RNA on Capsid Assembly Pathways via Coarse-Grained Stochastic Simulation.

PLoS One 2016 31;11(5):e0156547. Epub 2016 May 31.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.

View Article and Find Full Text PDF
July 2017