Publications by authors named "Ruping Sun"

21Publications

Characterizing the ecological and evolutionary dynamics of cancer.

Nat Genet 2020 08 27;52(8):759-767. Epub 2020 Jul 27.

Stanford Cancer Institute, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41588-020-0668-4DOI Listing
August 2020

Big Bang Tumor Growth and Clonal Evolution.

Cold Spring Harb Perspect Med 2018 05 1;8(5). Epub 2018 May 1.

Departments of Medicine and Genetics, Stanford University School of Medicine, Stanford, California 94305.

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http://dx.doi.org/10.1101/cshperspect.a028381DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932575PMC
May 2018

Between-region genetic divergence reflects the mode and tempo of tumor evolution.

Nat Genet 2017 Jul 5;49(7):1015-1024. Epub 2017 Jun 5.

Department of Medicine, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1038/ng.3891DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5643198PMC
July 2017

A population genetics perspective on the determinants of intra-tumor heterogeneity.

Biochim Biophys Acta Rev Cancer 2017 Apr 6;1867(2):109-126. Epub 2017 Mar 6.

Departments of Medicine and Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbcan.2017.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5623098PMC
April 2017

CD74-NRG1 fusions in lung adenocarcinoma.

Cancer Discov 2014 Apr 27;4(4):415-22. Epub 2014 Jan 27.

1Department of Translational Genomics; 2Department I of Internal Medicine; 3Laboratory of Translational Cancer Genomics; 4Network Genomic Medicine, University Hospital Cologne, Center of Integrated Oncology Cologne-Bonn; 5Center for Molecular Medicine Cologne (CMMC); 6Cologne Center for Genomics (CCG); 7Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD); 8Department of Pathology, University Hospital Medical Center, University of Cologne; 9Blackfield AG; 10Max Planck Institute for Neurological Research; 11Thoracic Surgery, Lungenklinik Merheim, Kliniken der Stadt Köln gGmbH; 12Institute of Human Genetics, Cologne; 13Computational Molecular Biology Department, Max Planck Institute for Molecular Genetics, Berlin; 14Department of Prostate Cancer Research, Institute of Pathology; 15Institute for Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn; 16Institute of Pathology; 17Department of Internal Medicine II, Jena University Hospital, Friedrich-Schiller-University, Jena; 18Institute for Pathology Bad Berka, Bad Berka, Germany;19Division of Molecular Oncology, Aichi Cancer Center Research Institute; 20Department of Pathology and Molecular Diagnostics, Aichi Cancer Center, Nagoya, Japan; Departments of 21Surgery and22Pathology, St. Vincent's Hospital; 23Department of Haematology and Medical Oncology, Peter MacCallum Cancer Centre, Melbourne, Victoria, Australia;24Department of Pathology, 25CHU Grenoble Institut National de la Santé et de la Recherche Medicale (INSERM) U823, Institute Albert Bonniot, Grenoble-Alpes University, Grenoble, France; 26Laboratory of Oncology IRCCS Casa Sollievo della Sofferenza, San Giovanni Rotondo; 27Laboratory for Molecular Medicine and Biotechnology, University Campus Bio-Medico, Rome, Italy; 28Center for the Biology of Disease, VIB, Leuven; and 29Oncology Discovery, Janssen Research and Development, A Division of Janssen Pharmaceutica NV, Beerse, Belgium.

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http://dx.doi.org/10.1158/2159-8290.CD-13-0633DOI Listing
April 2014

Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer.

Nat Genet 2012 Oct 2;44(10):1104-10. Epub 2012 Sep 2.

Department of Translational Genomics, University of Cologne, Cologne, Germany.

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http://dx.doi.org/10.1038/ng.2396DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915822PMC
October 2012

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.

Bioinformatics 2012 Apr 1;28(7):1024-5. Epub 2012 Feb 1.

Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bts064DOI Listing
April 2012

Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.

Bioinformatics 2012 Mar 11;28(5):619-27. Epub 2012 Jan 11.

Department of Computer Science, Freie Universität Berlin, Takustrasse 9, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bts019DOI Listing
March 2012

Modeling read counts for CNV detection in exome sequencing data.

Stat Appl Genet Mol Biol 2011 Nov 8;10(1). Epub 2011 Nov 8.

Max Planck Institute for Molecular Genetics.

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http://dx.doi.org/10.2202/1544-6115.1732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3517018PMC
November 2011

A strategy for meta-analysis of short time series microarray datasets.

Front Biosci (Landmark Ed) 2009 Jan 1;14:4058-70. Epub 2009 Jan 1.

State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Science, Fudan University, Shanghai 200433 PR, China.

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http://dx.doi.org/10.2741/3512DOI Listing
January 2009

Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours.

BMC Genomics 2009 Feb 26;10:93. Epub 2009 Feb 26.

State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai, PR China.

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http://dx.doi.org/10.1186/1471-2164-10-93DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2653538PMC
February 2009

Simultaneously detection of genomic and expression alterations in prostate cancer using cDNA microarray.

Prostate 2008 Oct;68(14):1496-509

State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Science, Fudan University, Shanghai, China.

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http://dx.doi.org/10.1002/pros.20756DOI Listing
October 2008

Identification of genes differentially regulated by transcription factor, AP-2delta.

Front Biosci 2007 Jan 1;12:1699-706. Epub 2007 Jan 1.

State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai 200433, People's Republic of China.

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http://dx.doi.org/10.2741/2182DOI Listing
January 2007

Molecular cloning and characterization of AAAS-V2, a novel splice variant of human AAAS.

Mol Biol Rep 2005 Jun;32(2):127-31

State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai, People's Republic of China.

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http://dx.doi.org/10.1007/s11033-004-6939-9DOI Listing
June 2005