Ruoting Yang

Ruoting Yang

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Ruoting Yang

Ruoting Yang

Publications by authors named "Ruoting Yang"

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17Publications

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Functional Heatmap: an automated and interactive pattern recognition tool to integrate time with multi-omics assays.

BMC Bioinformatics 2019 Feb 15;20(1):81. Epub 2019 Feb 15.

Integrative Systems Biology Program, US Army Center for Environmental Health Research, Fort Detrick, Frederick, MD, 21702-5010, USA.

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http://dx.doi.org/10.1186/s12859-019-2657-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6377781PMC
February 2019

PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data.

BMC Bioinformatics 2018 Nov 29;19(1):458. Epub 2018 Nov 29.

Integrative Systems Biology Program, US Army Center for Environmental Health Research, 568 Doughten Drive, Fort Detrick, MD, 21702-5010, USA.

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http://dx.doi.org/10.1186/s12859-018-2494-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6267067PMC
November 2018

Systems biology approach to understanding post-traumatic stress disorder.

Mol Biosyst 2015 Apr;11(4):980-93

Institute of Collaborative Biotechnologies, University of California Santa Barbara, Santa Barbara, California, USA.

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http://xlink.rsc.org/?DOI=C4MB00404C
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http://dx.doi.org/10.1039/c4mb00404cDOI Listing
April 2015

SysBioCube: A Data Warehouse and Integrative Data Analysis Platform Facilitating Systems Biology Studies of Disorders of Military Relevance.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:34-8. Epub 2013 Mar 18.

Advanced Biomedical Computing Center, Frederick National Laboratory for Cancer Research/SAIC-Frederick Inc., Frederick, MD.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814498PMC
December 2013

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder.

BMC Syst Biol 2013 Aug 20;7:80. Epub 2013 Aug 20.

Institute for Collaborative Biotechnologies, University of California Santa Barbara, Santa Barbara, CA 93106-5080, USA.

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http://dx.doi.org/10.1186/1752-0509-7-80DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751782PMC
August 2013

Inkjet printing assisted synthesis of multicomponent mesoporous metal oxides for ultrafast catalyst exploration.

Nano Lett 2012 Nov 18;12(11):5733-9. Epub 2012 Oct 18.

Department of Chemistry, Zhejiang University, Hangzhou, Zhejiang Province 310027, China.

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http://dx.doi.org/10.1021/nl302992qDOI Listing
November 2012

Core module biomarker identification with network exploration for breast cancer metastasis.

BMC Bioinformatics 2012 Jan 18;13:12. Epub 2012 Jan 18.

Institute for Collaborative Biotechnologies, University of California Santa Barbara, Santa Barbara, CA 93106-5080, USA.

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http://dx.doi.org/10.1186/1471-2105-13-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3349569PMC
January 2012

The R5 to X4 coreceptor switch: a dead-end path, or a strategic maneuver? Lessons from a game theoretic analysis.

Bull Math Biol 2011 Oct 4;73(10):2339-56. Epub 2011 Mar 4.

Department of Mechanical, Aerospace and Biomedical Engineering, University of Tennessee, Knoxville, TN 37996, USA.

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http://link.springer.com/10.1007/s11538-010-9625-1
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http://dx.doi.org/10.1007/s11538-010-9625-1DOI Listing
October 2011

External control of the GAL network in S. cerevisiae: a view from control theory.

PLoS One 2011 Apr 29;6(4):e19353. Epub 2011 Apr 29.

Department of Mechanical, Aerospace and Biomedical Engineering, The University of Tennessee, Knoxville, Tennessee, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019353PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3084829PMC
April 2011

A mathematical model on the closing and opening mechanism for venus flytrap.

Plant Signal Behav 2010 Aug;5(8):968-78

Mechanical, Aerospace and Biomedical Engineering Department University of Tennessee, Knoxville, TN, USA.

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http://dx.doi.org/10.4161/psb.5.8.12136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3115172PMC
August 2010

Embedding evolutionary game theory into an optimal control framework for drug dosage design.

Conf Proc IEEE Eng Med Biol Soc 2009 ;2009:6026-9

Department of Mechanical, Aerospace and Biomedical Engineering, The University of Tennessee, Knoxville, TN, USA.

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http://dx.doi.org/10.1109/IEMBS.2009.5333520DOI Listing
April 2010

A shooting algorithm for complex immunodominance control problems.

Conf Proc IEEE Eng Med Biol Soc 2009 ;2009:3897-900

Mechanical, Aerospace and Biomedical Engineering Department, University of Tennessee, Knoxville, 37996, USA.

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http://ieeexplore.ieee.org/document/5333566/
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http://dx.doi.org/10.1109/IEMBS.2009.5333566DOI Listing
April 2010

Complex mathematical models of biology at the nanoscale.

Wiley Interdiscip Rev Nanomed Nanobiotechnol 2009 Nov-Dec;1(6):650-9

Department of Mechanical, Aerospace and Biomedical Engineering, The University of Tennessee, Knoxville, TN 37996, USA.

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http://dx.doi.org/10.1002/wnan.61DOI Listing
March 2010

The danger is growing! A new paradigm for immune system activation and peripheral tolerance.

PLoS One 2009 Dec 2;4(12):e8112. Epub 2009 Dec 2.

Mechanical, Aerospace and Biomedical Engineering Department, University of Tennessee Knoxville, Knoxville, Tennessee, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008112PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779512PMC
December 2009