Ruiqiang Li

Ruiqiang Li

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Ruiqiang Li

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Disruption of the ZBED6 binding site in intron 3 of IGF2 by CRISPR/Cas9 leads to enhanced muscle development in Liang Guang Small Spotted pigs.

Transgenic Res 2019 02 28;28(1):141-150. Epub 2018 Nov 28.

State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, No. 3 Road of Higher Education Mega Centre North, Guangzhou, 510006, People's Republic of China.

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http://dx.doi.org/10.1007/s11248-018-0107-9DOI Listing
February 2019

The genetics of tiger pelage color variations.

Cell Res 2017 07 10;27(7):954-957. Epub 2017 Mar 10.

School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China.

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http://dx.doi.org/10.1038/cr.2017.32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5518981PMC
July 2017

pBACode: a random-barcode-based high-throughput approach for BAC paired-end sequencing and physical clone mapping.

Nucleic Acids Res 2017 04;45(7):e52

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.

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http://dx.doi.org/10.1093/nar/gkw1261DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397170PMC
April 2017

Single-cell exome sequencing identifies mutations in KCP, LOC440040, and LOC440563 as drivers in renal cell carcinoma stem cells.

Cell Res 2017 04 16;27(4):590-593. Epub 2016 Dec 16.

Department of Urology, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shanxi 710061, China.

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http://dx.doi.org/10.1038/cr.2016.150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5385607PMC
April 2017

Detecting mitochondrial signatures of selection in wild Tibetan pigs and domesticated pigs.

Mitochondrial DNA A DNA Mapp Seq Anal 2016 9;27(1):747-52. Epub 2014 May 9.

b Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University , Ya'an , Sichuan , China , and.

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http://www.tandfonline.com/doi/full/10.3109/19401736.2014.91
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http://dx.doi.org/10.3109/19401736.2014.913169DOI Listing
September 2016

Characterization of Genomic Variants Associated with Scout and Recruit Behavioral Castes in Honey Bees Using Whole-Genome Sequencing.

PLoS One 2016 19;11(1):e0146430. Epub 2016 Jan 19.

Department of Animal Sciences, Department of Statistics, Neuroscience Program, and Carle Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0146430PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4718678PMC
August 2016

Reply to 'Olfactory genes in Tibetan wild boar (NG-CR42819)'.

Nat Genet 2016 08;48(9):973-4

Novogene Bioinformatics Institute, Beijing, China.

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http://dx.doi.org/10.1038/ng.3639DOI Listing
August 2016

Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee Subspecies Apis mellifera sinisxinyuan n. ssp.

Mol Biol Evol 2016 05 27;33(5):1337-48. Epub 2016 Jan 27.

Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China Key Laboratory of Pollinating Insect Biology, Ministry of Agriculture, Beijing, China

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http://dx.doi.org/10.1093/molbev/msw017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4839221PMC
May 2016

Genome-wide DNA methylation changes between the superficial and deep backfat tissues of the pig.

Int J Mol Sci 2012 8;13(6):7098-108. Epub 2012 Jun 8.

Institute of Animal Genetics & Breeding, College of Animal Science & Technology, Sichuan Agricultural University, Ya'an 625000, China; E-Mails: (M.L.); (T.W.); (J.Z.); (C.Z.); (A.J.).

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http://dx.doi.org/10.3390/ijms13067098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397513PMC
September 2015

Genetic responses to seasonal variation in altitudinal stress: whole-genome resequencing of great tit in eastern Himalayas.

Sci Rep 2015 Sep 25;5:14256. Epub 2015 Sep 25.

Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.

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http://www.nature.com/articles/srep14256
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http://dx.doi.org/10.1038/srep14256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585896PMC
September 2015

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Nat Biotechnol 2015 May 20;33(5):531-7. Epub 2015 Apr 20.

1] State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Hybrid R &D Engineering Center (the Ministry of Education), Nanjing Agricultural University, Nanjing, Jiangsu, China. [2] Department of Molecular Biosciences, Center for Computational Biology and Bioinformatics, and Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas, USA.

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http://dx.doi.org/10.1038/nbt.3207DOI Listing
May 2015

The miRNA Transcriptome Directly Reflects the Physiological and Biochemical Differences between Red, White, and Intermediate Muscle Fiber Types.

Int J Mol Sci 2015 Apr 29;16(5):9635-53. Epub 2015 Apr 29.

Institute of Animal Genetics & Breeding, College of Animal Science & Technology, Sichuan Agricultural University, Ya'an 625014, Sichuan, China.

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http://dx.doi.org/10.3390/ijms16059635DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463610PMC
April 2015

Reply to 'Evolution of Tibetan wild boars'.

Nat Genet 2015 Mar;47(3):189-90

Novogene Bioinformatics Institute, Beijing, China.

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http://dx.doi.org/10.1038/ng.3194DOI Listing
March 2015

Reply to 'On genetic differentiation between domestic pigs and Tibetan wild boars'.

Nat Genet 2015 Mar;47(3):192

Novogene Bioinformatics Institute, Beijing, China.

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http://dx.doi.org/10.1038/ng.3193DOI Listing
March 2015

Snapshot of structural variations in the Tibetan wild boar genome at single-nucleotide resolution.

J Genet Genomics 2014 Dec 22;41(12):653-7. Epub 2014 Oct 22.

Chongqing Academy of Animal Sciences, Rongchang, Chongqing 402460, China; Key Laboratory of Pig Industry Sciences, Ministry of Agriculture, Rongchang, Chongqing 402460, China. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2014.10.001DOI Listing
December 2014

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits.

Nat Biotechnol 2014 Oct 14;32(10):1045-52. Epub 2014 Sep 14.

1] The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China. [2] Key Laboratory of Crop Gene Resource and Germplasm Enhancement (MOA), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China. [3] Key Laboratory of Soybean Biology (Beijing) (MOA), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China.

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http://dx.doi.org/10.1038/nbt.2979DOI Listing
October 2014

The general amino acid control pathway regulates mTOR and autophagy during serum/glutamine starvation.

J Cell Biol 2014 Jul;206(2):173-82

State Key Laboratory of Biomembrane and Membrane Biotechnology, Tsinghua University-Peking University Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China

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http://dx.doi.org/10.1083/jcb.201403009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4107793PMC
July 2014

Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication.

Sci Rep 2014 Apr 14;4:4678. Epub 2014 Apr 14.

1] Biodynamic Optical Imaging Center (BIOPIC), Peking-Tsinghua Center for Life Sciences, and School of Life Sciences, Peking University, Beijing 100871, People's Republic of China [2] Novogene Bioinformatics Institute, Beijing 100083, People's Republic of China.

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http://dx.doi.org/10.1038/srep04678DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3985078PMC
April 2014

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.

PLoS One 2013 31;8(5):e65632. Epub 2013 May 31.

HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065632PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3669295PMC
January 2014

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars.

Nat Genet 2013 Dec 27;45(12):1431-8. Epub 2013 Oct 27.

1] Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya'an, China. [2] Biodynamic Optical Imaging Center (BIOPIC), Peking-Tsinghua Center for Life Sciences and School of Life Sciences, Peking University, Beijing, China. [3].

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http://dx.doi.org/10.1038/ng.2811DOI Listing
December 2013

Preparation, characterization, and evaluation in vivo of Ins-SiO₂-HP55 (insulin-loaded silica coating HP55) for oral delivery of insulin.

Int J Pharm 2013 Sep 3;454(1):278-84. Epub 2013 Jul 3.

Key Laboratory of Forest Plant Ecology, Northeast Forestry University, Ministry of Education, Harbin, Heilongjiang, China.

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http://dx.doi.org/10.1016/j.ijpharm.2013.06.051DOI Listing
September 2013

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.

Nat Struct Mol Biol 2013 Sep 11;20(9):1131-9. Epub 2013 Aug 11.

1] Biodynamic Optical Imaging Center and Center for Reproductive Medicine, College of Life Sciences, Third Hospital, Peking University, Beijing, China. [2] Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing, China. [3].

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http://dx.doi.org/10.1038/nsmb.2660DOI Listing
September 2013

The genetic basis of white tigers.

Curr Biol 2013 Jun 23;23(11):1031-5. Epub 2013 May 23.

Peking-Tsinghua Center for Life Sciences, Laboratory of Genomic Diversity and Evolution, College of Life Sciences, Peking University, Beijing 100871, China.

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http://dx.doi.org/10.1016/j.cub.2013.04.054DOI Listing
June 2013

Co-methylated genes in different adipose depots of pig are associated with metabolic, inflammatory and immune processes.

Int J Biol Sci 2012 10;8(6):831-7. Epub 2012 Jun 10.

Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University, Ya'an, Sichuan, China.

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http://dx.doi.org/10.7150/ijbs.4493DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3372887PMC
October 2012

Test driving genome assemblers.

Authors:
Wei Fan Ruiqiang Li

Nat Biotechnol 2012 Apr 10;30(4):330-1. Epub 2012 Apr 10.

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http://www.nature.com/articles/nbt.2172
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http://dx.doi.org/10.1038/nbt.2172DOI Listing
April 2012

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.

Bioinformatics 2012 Mar 28;28(6):878-9. Epub 2012 Jan 28.

Department of Computer Science, The University of Hong Kong, Hong Kong, China.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bts061DOI Listing
March 2012

The genome of the mesopolyploid crop species Brassica rapa.

Nat Genet 2011 Aug 28;43(10):1035-9. Epub 2011 Aug 28.

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences (IVF, CAAS), Beijing, China.

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http://dx.doi.org/10.1038/ng.919DOI Listing
August 2011

Genome sequence and analysis of the tuber crop potato.

Nature 2011 Jul 10;475(7355):189-95. Epub 2011 Jul 10.

BGI-Shenzhen, Chinese Ministry of Agricultural, Key Lab of Genomics, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.

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http://dx.doi.org/10.1038/nature10158DOI Listing
July 2011

A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio.

Bioinformatics 2011 Jun 14;27(11):1489-95. Epub 2011 Apr 14.

Department of Computer Science, The University of Hong Kong, Hong Kong.

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http://dx.doi.org/10.1093/bioinformatics/btr186DOI Listing
June 2011

Exome sequencing identifies ZNF644 mutations in high myopia.

PLoS Genet 2011 Jun 9;7(6):e1002084. Epub 2011 Jun 9.

The Sichuan Provincial Key Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, Chengdu, Sichuan, China.

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http://dx.plos.org/10.1371/journal.pgen.1002084
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http://dx.doi.org/10.1371/journal.pgen.1002084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111487PMC
June 2011

Evolutionary transients in the rice transcriptome.

Genomics Proteomics Bioinformatics 2010 Dec;8(4):211-28

Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.

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https://linkinghub.elsevier.com/retrieve/pii/S16720229106002
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http://dx.doi.org/10.1016/S1672-0229(10)60023-XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054128PMC
December 2010

Single base-resolution methylome of the silkworm reveals a sparse epigenomic map.

Nat Biotechnol 2010 May 2;28(5):516-20. Epub 2010 May 2.

CAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, The Chinese Academy of Sciences, Kunming, China.

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http://dx.doi.org/10.1038/nbt.1626DOI Listing
May 2010

SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology.

Nucleic Acids Res 2010 Jan 30;38(Database issue):D453-6. Epub 2009 Sep 30.

The Key Sericultural Laboratory of Agricultural Ministry, Southwest University, Chongqing 400716, China.

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http://dx.doi.org/10.1093/nar/gkp801DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808975PMC
January 2010

The sequence and de novo assembly of the giant panda genome.

Nature 2010 Jan 13;463(7279):311-7. Epub 2009 Dec 13.

BGI-Shenzhen, Shenzhen 518083, China.

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http://dx.doi.org/10.1038/nature08696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497PMC
January 2010

SOAP2: an improved ultrafast tool for short read alignment.

Bioinformatics 2009 Aug 3;25(15):1966-7. Epub 2009 Jun 3.

Beijing Genomics Institute at Shenzhen, Shenzhen, 518083, China.

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http://dx.doi.org/10.1093/bioinformatics/btp336DOI Listing
August 2009

SNP detection for massively parallel whole-genome resequencing.

Genome Res 2009 Jun 6;19(6):1124-32. Epub 2009 May 6.

Beijing Genomics Institute at Shenzhen, Shenzhen 518000, China

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http://dx.doi.org/10.1101/gr.088013.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694485PMC
June 2009

The YH database: the first Asian diploid genome database.

Nucleic Acids Res 2009 Jan;37(Database issue):D1025-8

Beijing Genomics Institute at Shenzhen 518083, China.

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http://dx.doi.org/10.1093/nar/gkn966DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686535PMC
January 2009

SOAP: short oligonucleotide alignment program.

Bioinformatics 2008 Mar 28;24(5):713-4. Epub 2008 Jan 28.

Beijing Genomics Institute at Shenzhen, Shenzhen 518083, China.

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http://dx.doi.org/10.1093/bioinformatics/btn025DOI Listing
March 2008

Gene conversion in the rice genome.

BMC Genomics 2008 Feb 25;9:93. Epub 2008 Feb 25.

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, Beijing 101300, China.

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http://dx.doi.org/10.1186/1471-2164-9-93DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2277409PMC
February 2008

TreeFam: 2008 Update.

Nucleic Acids Res 2008 Jan 1;36(Database issue):D735-40. Epub 2007 Dec 1.

Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkm1005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238856PMC
January 2008

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1038/nature06341DOI Listing
November 2007

WEGO: a web tool for plotting GO annotations.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W293-7

James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou 310008, China.

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http://dx.doi.org/10.1093/nar/gkl031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538768PMC
July 2006

TreeFam: a curated database of phylogenetic trees of animal gene families.

Nucleic Acids Res 2006 Jan;34(Database issue):D572-80

Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China.

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http://dx.doi.org/10.1093/nar/gkj118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347480PMC
January 2006

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun.

PLoS Comput Biol 2005 Sep 23;1(4):e43. Epub 2005 Sep 23.

James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou, China.

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http://dx.doi.org/10.1371/journal.pcbi.0010043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1232128PMC
September 2005

The Genomes of Oryza sativa: a history of duplications.

PLoS Biol 2005 Feb 1;3(2):e38. Epub 2005 Feb 1.

Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, China.

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http://dx.doi.org/10.1371/journal.pbio.0030038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546038PMC
February 2005

The analysis of large-scale gene expression correlated to the phase changes of the migratory locust.

Proc Natl Acad Sci U S A 2004 Dec 9;101(51):17611-5. Epub 2004 Dec 9.

National Laboratory of Integrated Management of Insect Pests and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100080, China.

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http://dx.doi.org/10.1073/pnas.0407753101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC535406PMC
December 2004

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms.

Nature 2004 Dec;432(7018):717-22

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, Beijing 101300, China.

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http://dx.doi.org/10.1038/nature03156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2263125PMC
December 2004